BAC Information

Click to search

BAC

Clone NameB6Ng01-116C09
Chromosome3 (Build37)
Map Location 41,059,171 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116C09.bB6Ng01-116C09.g
ACCDH921221DH921222
length999985
definitionDH921221|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C09, 5' end.DH921222|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctgcagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcat
tttttgtcttattgacggtatcttttgccttgcagaagctttgcagcttc
atgaggtcccatttgtcaattctagatcttacagcacaagccattgctgt
tttattgaggaattttccccctgtgcccatatcttccaggcttttcccca
ctttctcttctataagtttcactgtctctggttttatgtggagttccttg
atccactcagatttgaccttagtacaaggagacaggaattgattgattca
cattcttcttctacatgataaccaccagttgtgccatcaccattcgttga
aaatgctgtctttcttccactggatgattttagctcccttgaaaaagatc
aagtgagcataggtgtgtgggttaatttctgggtcttcaattctattcca
ttggtctacttgtatgtcactataccagtaccattcagtttttattacaa
ttgctctgtagtaaaggtcaggcatggtgattccaccagagcttctttta
tccttgagaagagtttttgctatcctaggtttttttgttattccagatga
atttgcagattgccctttctaattcggtgaagaattgagttggaattttg
atggggattgcattgaaactatagattgcttttggcaagttagccatttt
tacaatgttgatcctgccaatccatgagtatgggagatctttccatcttc
tgagatcttctttaagcatttgttgttatagttgcctctattggagcttg
tcctctagtcattctgttagcttctattagcagacctgggagactagctc
tcttgtgagtttcagtggttagggcactctctgcaggcagcttcttctc
gaattctgtttagatgtgtactccattttagttgggctacttggttgctt
tgaatccaacttcttgaggttttaaaaaatatattttggatattagtgct
tggtagggtcagtgaagatattttttaattctgtaagctgccattttgtc
ctattgatagtgtgtctagcctctccttgatttccttaatgtgtcttatt
actataggtagaattcaagtactgtattgaatagatatggagagaatgga
tagccttgtcttgtttctgattttagttgaattgctttgcatttctcttc
atttaacttgattttggccatgaattttctttaaatagctacctgatctc
ttcaagactttagtgatgaagaggtggccttttattatatctcatgagag
gattatgcagttttttttcagtttatttgtataatgtatcctatagactg
taatatgttaaatcatccctatatatatataagatgaaatcgaatttttc
atggtggttgatctttttgatgttttcttggattcattttgtgagcattc
tattgagtatttttacacctatgttcataagggaagtgatctgtaattct
tgttaattgttggatatttgtgtggtctaagtatcagtgtacctgtggcc
tcataaaacaaattggacattatcccttttgtgtttatttttatggaatg
atttgagcagtattggtgttaattctttgaaagtttagttctgtgctaaa
accatttagccctgggctgtttttgttgggaaacttttactgcttctatt
tccttagaattataggtattatttaaattatgttattgatcacaatttag
actactgagttgatctattgagaaaaatgttccatttcatatagattttc
caatttgtggagtatagatttctttttctaaatttgtattggttatctat
tacattaatgtaacccctttccagttattccatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059171_41059737
seq2: B6Ng01-116C09.b_47_618 (reverse)

seq1  ATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACG  50
      ||||||||| ||||| ||||||||||||||||||||||||| ||||||  
seq2  ATAGTGACATACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAATT  50

seq1  AATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCAT  100
      || ||||||||||||| ||||||||||||   |||||||||||||| |||
seq2  AACCCACACACCTATGCTCACTTGATCTTTTTCAAGGGAGCTAAAATCAT  100

seq1  CCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGT  150
      ||||||||| |||||||||||||||||| ||||||| |||||||||||||
seq2  CCAGTGGAAGAAAGACAGCATTTTCAACGAATGGTGATGGCACAACTGGT  150

seq1  TGTTATCATGT---AGAAGAATGCGAATTGATCCACTCCTATCTCCTTGT  197
       ||||||||||   ||||||||| ||||  ||| | |||| |||||||||
seq2  GGTTATCATGTAGAAGAAGAATGTGAATCAATCAATTCCTGTCTCCTTGT  200

seq1  ACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGAC  247
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  ACTAAGGTCAAATCTGAGTGGATCAAGGAACTCCACATAAAACCAGAGAC  250

seq1  ACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCA  297
      | ||||||||||||| |||||||||||||||||||| |||||||||| ||
seq2  AGTGAAACTTATAGAAGAGAAAGTGGGGAAAAGCCTGGAAGATATGGGCA  300

seq1  CAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTG  347
      |||||| |||||||||  ||| ||||||||||||||||||||||||||  
seq2  CAGGGGGAAAATTCCTCAATAAAACAGCAATGGCTTGTGCTGTAAGATCT  350

seq1  AGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAA  397
      ||||| |||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAATTGACAAATGGGACCTCATGAAGCTGCAAAGCTTCTGCAAGGCAAA  400

seq1  AGACACCGTCAATAAGACAAAAA--GGCACCAACAGATTGGGAAAGGATC  445
      ||| |||||||||||||||||||  | |||||||||||||||||||||||
seq2  AGATACCGTCAATAAGACAAAAAATGCCACCAACAGATTGGGAAAGGATC  450

seq1  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGA  500

seq1  ACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGG  545
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  ACTCAAGAAGGTGGACTGCAGAAAATCAAATAACCCCATTAAAAAATGGG  550

seq1  GCTCAGAGCTAAACAAAGAATT  567
      ||||||||||||||||||||||
seq2  GCTCAGAGCTAAACAAAGAATT  572