BAC Information

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BAC

Clone NameB6Ng01-116D09
Chromosome3 (Build37)15 (Build37)
Map Location 99,170,100 - 99,170,7249,722,373 - 9,723,478
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfp697, LOC100043461, Hsd3b4, LOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15
Downstream geneM6pr-ps, Spag17, LOC623045, Wdr3, Gdap2, LOC195514
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116D09.bB6Ng01-116D09.g
ACCDH921265DH921266
length9821,100
definitionDH921265|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D09, 5' end.DH921266|Mus musculus domesticus DNA, BAC clone: B6Ng01-116D09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(99,170,100 - 99,170,724)(9,722,373 - 9,723,478)
sequence
gaattctttccagtcggggccagcccctccatcttctgcttgaacctggc
caagggcatcgagggtcccagaggactccccatgccgcaggactcctagc
acacccaggacctcatgatcactggagagcacgtgggcaacagaagcaac
agaacttcttgggcagggtccctttgggccttcatcctcagccaggaggt
ggagctgaaacccagacccctgggcaccttccttgccagaggagagtcag
cctacagggaaggctctgaccccaggactcaagaggtggatcagagctcc
agacttctggacacctgtcctgcaagaggagagcttgcctgcagagagtg
ctctgaccactgggactcaggtgagagttggactcccaggagtgctgacc
gatgctaacagaatcaaggaggatcaagctccagccagagacagcttgaa
cattaacaccagagattaccagatggcaaaaggcaaatgtaagaatctta
ctatcagaaaccaagaacactgggcatcatcaggacccagtatgcccacc
acagagagtactggatatcccaacacaactgaaaagcaagactcagattt
aaaatcatatgtcatgatggtggtagattttaagaagaatattaataact
cacttaaagaaatacagttagaagctcttaaagaattacaggaaaacact
gctaaacaggtagaagtccttaaagaggaaacacaaaattcccttaaaga
actacaggaaacaaccaaacaggagatggaattgaacaaaaccatccaag
atcaaaacatggaagtagaaacaatgaagaaaaatccaaagggagacaac
tcgagagatagaaacccaaggagagaaatcaggaaccatagaaagaaaac
ccaaagtgaggcaatgctggagatagaaaccctaggaaagaaatctggaa
ccatagatgcgagcatcagcacagaatgcaga
gaattcactaccttgagagtaacaattcataaatagggagtatttgtttg
gttcagtttctaggggctcagatttttattagaggacccattaatttggg
atgctatcggcctctgagggggagaaggggctcactttccagagaatggg
atggaaaagagacctaaacattttattttgtttcagaaaagcctgttttg
actgcctctacagcactgcagtatattttgttattgtgaactcatccagc
atcataataaattacttatgcttcccatactttgtctcgtgaaaattgac
tgtaaaataaaacatgatagtatttttgtcctggattattccatatattt
tagcattaatatatatgggctttttaaaaaatcaaaacatgtaagaaaat
tttagagctattaaaatgtcttagtcttggaagtcctctaagcatatagc
agcttactaacagttctttctcccatctcacttttcagttaagtccaatt
atatctttagctgaagaaaatccataaaatatattttgatcatattttta
actcacccctaatgcatcccccacactcagcttcatgtttgccttttctt
tctcttcaaaaaggaaaaaggaaaaattatttcctccccacacacatgca
catacaaatcacacacacacacacacacaaatgcatgcacgcatgtgcac
atgtccatttatgttggacaactacttatgagcatgtgtccttcccctga
gtacagttgatcagttgatctatacagggtgaaaatttctcaaaaaagtc
aatatgtatctaccacaagatccagatatactcaggacctctggaagaga
agacagtgctcttaaccactgagctatctgtccagcccgaagcctttgta
tgtctagtgtgccttggcagcacaatagctgggcagctgcttaccctcca
ctccatgctgtcagatcaggagtggtaataatgtacaatgtagcattttc
ttcgatgaatgacttttggtggcatgttgctaaactgcccattcaggtac
ccactgtcacaattgagtcaagggttcttcctctttgtatcaccagaatg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_99170100_99170724
seq2: B6Ng01-116D09.b_63_684

seq1  GGGGCCAGCCCCACCATCTTCTGCGTGAACCTGGCAGAGGGCATCGA-GG  49
      |||||||||||| ||||||||||| ||||||||||  |||||||||| ||
seq2  GGGGCCAGCCCCTCCATCTTCTGCTTGAACCTGGCCAAGGGCATCGAGGG  50

seq1  CCTCAGAGGACTCTCCATGACACAGGATCCCTAGCACACCCAGGACCTCG  99
       | |||||||||| ||||| | |||||  |||||||||||||||||||| 
seq2  TCCCAGAGGACTCCCCATGCCGCAGGACTCCTAGCACACCCAGGACCTCA  100

seq1  TGATCACTGGAGAGCCCGTGGGCAACAGAAGCAACAGAGCTTCTTGGACA  149
      ||||||||||||||| |||||||||||||||||||||| |||||||| ||
seq2  TGATCACTGGAGAGCACGTGGGCAACAGAAGCAACAGAACTTCTTGGGCA  150

seq1  GGGTCCCATCTGGCCTTCATCCTCAACCAGGAGGCAGAGCTGAGACCCAG  199
      ||||||| |  |||||||||||||| ||||||||  ||||||| ||||||
seq2  GGGTCCCTTTGGGCCTTCATCCTCAGCCAGGAGGTGGAGCTGAAACCCAG  200

seq1  ACCCCTGGGCACCTTCCTTGCCAGAGAAGAGTCGACCTACAGGGAGGGTT  249
      |||||||||||||||||||||||||| ||||||  |||||||||| || |
seq2  ACCCCTGGGCACCTTCCTTGCCAGAGGAGAGTCAGCCTACAGGGAAGGCT  250

seq1  CTGACCCCAGGATTCAGGAGGTGTATCAGAGCTCCAGACTTCTGGACACC  299
      |||||||||||| ||| |||||| ||||||||||||||||||||||||||
seq2  CTGACCCCAGGACTCAAGAGGTGGATCAGAGCTCCAGACTTCTGGACACC  300

seq1  TGCCCTGCAAGAGGAGAGCATGCCTGCAGGGAGTGCTCTGACCACTGGGA  349
      || |||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TGTCCTGCAAGAGGAGAGCTTGCCTGCAGAGAGTGCTCTGACCACTGGGA  350

seq1  CTTAGGTGAGATTTGGACTCCCAGGAGTGATGACAGAGGCTAACAGAATC  399
      || |||||||| ||||||||||||||||| |||| || ||||||||||||
seq2  CTCAGGTGAGAGTTGGACTCCCAGGAGTGCTGACCGATGCTAACAGAATC  400

seq1  ACAGGAGGATCAAGCTCCAGCCAGAGACAGCTAGAACATTAACACCAGAG  449
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  A-AGGAGGATCAAGCTCCAGCCAGAGACAGCTTGAACATTAACACCAGAG  449

seq1  ATTACCAGATGGTGAAAGGCAAATGTAAGAATCTTACTAACAGAAACCAA  499
      ||||||||||||  ||||||||||||||||||||||||| ||||||||||
seq2  ATTACCAGATGGCAAAAGGCAAATGTAAGAATCTTACTATCAGAAACCAA  499

seq1  GAACACTGGGCATCATCAGAATTCAGTACGCCCACCACGGCGAGACCTGG  549
      ||||||||||||||||||| |  ||||| ||||||||| | |||  ||||
seq2  GAACACTGGGCATCATCAGGACCCAGTATGCCCACCACAGAGAGTACTGG  549

seq1  ATAACCCAACACACCCGAAAAGCAAGATTCGGATTTAAAATCACATCTCA  599
      ||| ||||||||| | ||||||||||| || |||||||||||| || |||
seq2  ATATCCCAACACAACTGAAAAGCAAGACTCAGATTTAAAATCATATGTCA  599

seq1  TGATGGTGGTAGAAGATTTTAAGAAG  625
      ||||||||||   |||||||||||||
seq2  TGATGGTGGT---AGATTTTAAGAAG  622

seq1: chr15_9722373_9723478
seq2: B6Ng01-116D09.g_69_1168

seq1  GAATTCACTACCTTGAGAGTAACAATTCATAAATAGGGAGTATTTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACCTTGAGAGTAACAATTCATAAATAGGGAGTATTTGTTTG  50

seq1  GTTCAGTTTCTAGGGGCTCAGATTTTTATTAGAGGACCCATTAATTTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTTTCTAGGGGCTCAGATTTTTATTAGAGGACCCATTAATTTGGG  100

seq1  ATGCTATCGGCCTCTGAGGGGGAGAAGGGGCTCACTTTCCAGAGAATGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTATCGGCCTCTGAGGGGGAGAAGGGGCTCACTTTCCAGAGAATGGG  150

seq1  ATGGAAAAGAGACCTAAACATTTTATTTTGTTTCAGAAAAGCCTGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAGAGACCTAAACATTTTATTTTGTTTCAGAAAAGCCTGTTTTG  200

seq1  ACTGCCTCTACAGCACTGCAGTATATTTTGTTATTGTGAACTCATCCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCTCTACAGCACTGCAGTATATTTTGTTATTGTGAACTCATCCAGC  250

seq1  ATCATAATAAATTACTTATGCTTCCCATACTTTGTCTCGTGAAAATTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATAAATTACTTATGCTTCCCATACTTTGTCTCGTGAAAATTGAC  300

seq1  TGTAAAATAAAACATGATAGTATTTTTGTCCTGGATTATTCCATATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATAAAACATGATAGTATTTTTGTCCTGGATTATTCCATATATTT  350

seq1  TAGCATTAATATATATGGGCTTTTTAAAAAATCAAAACATGTAAGAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATTAATATATATGGGCTTTTTAAAAAATCAAAACATGTAAGAAAAT  400

seq1  TTTAGAGCTATTAAAATGTCTTAGTCTTGGAAGTCCTCTAAGCATATAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCTATTAAAATGTCTTAGTCTTGGAAGTCCTCTAAGCATATAGC  450

seq1  AGCTTACTAACAGTTCTTTCTCCCATCTCACTTTTCAGTTAAGTCCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACTAACAGTTCTTTCTCCCATCTCACTTTTCAGTTAAGTCCAATT  500

seq1  ATATCTTTAGCTGAAGAAAATCCATAAAATATATTTTGATCATATTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTAGCTGAAGAAAATCCATAAAATATATTTTGATCATATTTTTA  550

seq1  ACTCACCCCTAATGCATCCCCCACACTCAGCTTCATGTTTGCCTTTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCCCTAATGCATCCCCCACACTCAGCTTCATGTTTGCCTTTTCTT  600

seq1  TCTCTTCAAAAAGGAAAAAGGAAAAATTATTTCCTCCCCACACACATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAAAAAGGAAAAAGGAAAAATTATTTCCTCCCCACACACATGCA  650

seq1  CATACAAATCACACACACACACACACACAAATGCATGCACGCATGTGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAATCACACACACACACACACACAAATGCATGCACGCATGTGCAC  700

seq1  ATGTCCATTTATGTTGGACAACTACTTATGAGCATGTGTCCTTCCCCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCATTTATGTTGGACAACTACTTATGAGCATGTGTCCTTCCCCTGA  750

seq1  GTACAGTTGATCAGTTGATCTATACAGGGTGAAAATTTCTCAAAAAAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTTGATCAGTTGATCTATACAGGGTGAAAATTTCTCAAAAAAGTC  800

seq1  AATATGTATCTACCACAAGATCCAGATATACTCAGGACCTCTGGAAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTATCTACCACAAGATCCAGATATACTCAGGACCTCTGGAAGAGA  850

seq1  AGACAGTGCTCTTAACCACTGAGCTATCTGTCCAGCCCGAAGCCTTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGCTCTTAACCACTGAGCTATCTGTCCAGCCCGAAGCCTTTGTA  900

seq1  TGTCTAGTGTGCCTTTGGCAGCACAATAGCTGGGCAGCTGCTTACCCTCC  950
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTCTAGTGTGCC-TTGGCAGCACAATAGCTGGGCAGCTGCTTACCCTCC  949

seq1  ACTCCATGCTGTCAGAATCAGGAGTGGTAATAATGTACAATGTAGCATTT  1000
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACTCCATGCTGTCAG-ATCAGGAGTGGTAATAATGTACAATGTAGCATTT  998

seq1  TCTTCGATGAATGAACTTTTGGTGGCATGTTGCTTAAACTGCCCATTCAG  1050
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TCTTCGATGAATG-ACTTTTGGTGGCATGTTGC-TAAACTGCCCATTCAG  1046

seq1  GTACACAACTGTCACAATTGAGTCAAGTGTTCCTTCTCTTTGTAATCAAC  1100
      |||| | |||||||||||||||||||| |||| | |||||||| |||| |
seq2  GTAC-CCACTGTCACAATTGAGTCAAGGGTTCTTCCTCTTTGT-ATCACC  1094

seq1  AGAATG  1106
      ||||||
seq2  AGAATG  1100