BAC Information

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BAC

Clone NameB6Ng01-116I04
Chromosome3 (Build37)
Map Location 95,062,652 - 95,230,832
singlet/doubletdoublet
Overlap genePrune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448
Upstream geneEG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl
Downstream geneLOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116I04.bB6Ng01-116I04.g
ACCDH921489DH921490
length477250
definitionDH921489|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I04, 5' end.DH921490|Mus musculus domesticus DNA, BAC clone: B6Ng01-116I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,062,652 - 95,063,128)(95,230,583 - 95,230,832)
sequence
gaattccaactgtcacatatttgcaaaagctatcttcagctggcaaaacc
atgcctctactagagcatgaggtaaatcatagtcagccgcttcagacagt
ctgaaaaagccccacatccctacacctgggattaaaaggaaaacctactc
ttataatatttctgcgtttttaaaaaaaacgcccaaattccagaattctc
aatatagagccaactttcctgccctgtccaaaaaacaaatgaccttcaca
aaagaaaaaacaaaaacaaaacaaagcctcacacacaaaatcactgattg
ctctacagagaatgacttataggagtacaaaataagtggatgcagagaaa
ctagcactcgggctcttacagcagcacagtgagggacgatggactgtaga
gaatcccggaggagagggaggcaagaggagagggaccgaggtactccaga
gtgagggggagtggaggtgagtgaagg
caggacagccagggctatacagagaaaccctgtctcaaaaaaccaaaaaa
aaaaaaaaaaaaaaaaaaaaggaatgccttagagcaacgtggatcctcct
atcgacctctgtagcctccctcagccttgaagcaggctgatccaaacttt
gaccttgctgccactaagaaggagattacctagggtagagccttctgact
ttgatggctctatttgctcttctccaagactgtttcctgctgaaaggtcc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95062652_95063128
seq2: B6Ng01-116I04.b_42_518

seq1  GAATTCCAACTGTCACATATTTGCAAAAGCTATCTTCAGCTGGCAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTGTCACATATTTGCAAAAGCTATCTTCAGCTGGCAAAACC  50

seq1  ATGCCTCTACTAGAGCATGAGGTAAATCATAGTCAGCCGCTTCAGACAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTACTAGAGCATGAGGTAAATCATAGTCAGCCGCTTCAGACAGT  100

seq1  CTGAAAAAGCCCCACATCCCTACACCTGGGATTAAAAGGAAAACCTACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAAGCCCCACATCCCTACACCTGGGATTAAAAGGAAAACCTACTC  150

seq1  TTATAATATTTCTGCGTTTTTAAAAAAAACGCCCAAATTCCAGAATTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATATTTCTGCGTTTTTAAAAAAAACGCCCAAATTCCAGAATTCTC  200

seq1  AATATAGAGCCAACTTTCCTGCCCTGTCCAAAAAACAAATGACCTTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAGCCAACTTTCCTGCCCTGTCCAAAAAACAAATGACCTTCACA  250

seq1  AAAGAAAAAACAAAAACAAAACAAAGCCTCACACACAAAATCACTGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAACAAAAACAAAACAAAGCCTCACACACAAAATCACTGATTG  300

seq1  CTCTACAGAGAATGACTTATAGGAGTACAAAATAAGTGGATGCAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGAGAATGACTTATAGGAGTACAAAATAAGTGGATGCAGAGAAA  350

seq1  CTAGCACTCGGGCTCTTACAGCAGCACAGTGAGGGACGATGGACTGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTCGGGCTCTTACAGCAGCACAGTGAGGGACGATGGACTGTAGA  400

seq1  GAATCCCGGAGGAGAGGGAGGCAAGAGGAGAGGGACCGAGGTACTCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCCGGAGGAGAGGGAGGCAAGAGGAGAGGGACCGAGGTACTCCAGA  450

seq1  GTGAGGGGGAGTGGAGGTGAGTGAAGG  477
      |||||||||||||||||||||||||||
seq2  GTGAGGGGGAGTGGAGGTGAGTGAAGG  477

seq1: chr3_95230583_95230832
seq2: B6Ng01-116I04.g_76_325 (reverse)

seq1  GGACCTTTCAGCAGGATGCAGTCTTGGAGAAGAGCAAATAGAGCCATCAA  50
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  GGACCTTTCAGCAGGAAACAGTCTTGGAGAAGAGCAAATAGAGCCATCAA  50

seq1  GGTCAGAAGGCTCTACCCTAGGTAATCTCCTTCTTAGTGGCAGCAAGGTC  100
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAGGCTCTACCCTAGGTAATCTCCTTCTTAGTGGCAGCAAGGTC  100

seq1  AAAGTCTGGATCAGCCTGCTTCAAGGCTGAGGGAGGCTACAGAGGTCGAT  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGGATCAGCCTGCTTCAAGGCTGAGGGAGGCTACAGAGGTCGAT  150

seq1  AGGAGGATCCACGTTGCTCTAAGGCATTCCTTTTTTTTTTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATCCACGTTGCTCTAAGGCATTCCTTTTTTTTTTTTTTTTTTTT  200

seq1  TTTTTTGGGTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTG  250