BAC Information

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BAC

Clone NameB6Ng01-116K17
Chromosome3 (Build37)
Map Location 41,059,187 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116K17.bB6Ng01-116K17.g
ACCDH921611DH921612
length9891,160
definitionDH921611|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K17, 5' end.DH921612|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtttcttttgctttgcagaagctttgcaatttta
tgaggtcccgtttatcgattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtaccaatatcttcaaggcttttccctac
tttcttctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattggc
attcttctacttgataacccccagttgtgccagcaccatttgttgaaaat
gctgtcttttctccactggatggttttagctcccttgtcaaagatcaagt
gaccataggtgtgtggattcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactataccagtaccatgcatttttgatcacaattgc
tctgtagtacagttttaggtccggcatgatgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatctgccgattgccctttctaattcgttgaagaattgagttggaatttt
gatggggaatgcattgaatctgtagattacttttggcaagatggccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttctttagagacttgaagttcttatcata
cagatctttcacttccttagttagagtcacgccaaggtattttatattat
ttgtgactattgagaaggtgttgtttccctattctttcc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacagcagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctgaaagcagtctggcggttcctcag
aaaattggacatagtactaccagaggatccagcaatacctctcctgggca
tatatcccgaagatgccccaactggtaagaaggacacatgctccactatg
ttcatagcagccttatttataatagccagaagctggaaagaaccgagatg
cccctcaacagaggaatggatacagaaaatgtggtacatctacacaatgg
agtactactcagttattaaaaagaatgaatttattaaattcctgggcaaa
tggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag
gaactcacacaatatgtactcactgataagtggatattagccccaaacct
aggatacccaagatataagatacaatttcctaaacacatgaaactcaaga
agaattaagactgaagtgtggacactatgcccctccttagaattgggaac
aaaacacccatggaaggagttacaaagacaaagtttggagctgagatgaa
aggatggaccatgtagagactgctatatccagggatccaccccataatca
gcatccaaatgctgacaccattgcatacactagcaagattttatcgaaag
gaccagatgtagctgtctcttgtgagactatgccggggcctagcaaacac
agaagtggatgctcacagtcagctaatgatggatcacaggctcccaatgg
agagcagaggaagaactcaagagcttaaagggatctgcatcctatagtgg
aacaacattatgactaacagtactcgggctcttgactctagctgcatatg
tatcaaagagggctagttggcatcactggaaaagaggtccatgacccgca
attaatgctcagtaccggtactccaggccaaaaagggggagtggggtgtg
taatggaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-116K17.b_46_597 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      |||||||||||| |||||||||||| |||| | |||||||||||||||||
seq2  AGACCAATGGAACAGAATTGAAGACCCAGAGATGAATCCACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100
      ||||||||||||| |||||||||||||||||||||||||||| |||||||
seq2  GTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAGAAAAGAC  100

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      |||||||||||||||||||||||||||||||||  ||||||| |||||||
seq2  AGCATTTTCAACAAATGGTGCTGGCACAACTGGGGGTTATCAAGTAGAAG  150

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      ||||| |||||||||| | |||||||||||||||||||||||||||||||
seq2  AATGCCAATTGATCCATTTCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      |||| ||||||| |||||||||||||||||||||||||||||||||| ||
seq2  GGATTAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGAAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  300
      ||||| |||||||||||||||||||| |  |||||||||||||||||| |
seq2  AAAGTAGGGAAAAGCCTTGAAGATATTGGTACAGGGGAAAAATTCCTGAA  300

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  350
      |||||||||||||||||||||||||||||  ||||| || ||| ||||||
seq2  TAGAACAGCAATGGCTTGTGCTGTAAGATCAAGAATCGATAAACGGGACC  350

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      |||| ||| |||||||||||||||| |||||||| |||||||||||||||
seq2  TCATAAAATTGCAAAGCTTCTGCAAAGCAAAAGAAACCGTCAATAAGACA  400

seq1  AAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCAGA  450

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  499
      ||||||||||||||||||||||||| ||||||||||||||||||| ||||
seq2  TAGGGGACTAATATCCAATATATATAAAGAACTCAAGAAGGTGGACTCCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  549
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTGAACAAAGAA  550

seq1  TT  551
      ||
seq2  TT  552