BAC Information

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BAC

Clone NameB6Ng01-116N05
Chromosome3 (Build37)
Map Location 81,799,620 - 81,922,059
singlet/doubletdoublet
Overlap geneAccn5, Gucy1b3, Gucy1a3
Upstream geneEG626841, Pdgfc, LOC229443, LOC100041901, Ctso, Tdo2
Downstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116N05.bB6Ng01-116N05.g
ACCDH921728DH921729
length1,1451,133
definitionDH921728|Mus musculus domesticus DNA, BAC clone: B6Ng01-116N05, 5' end.DH921729|Mus musculus domesticus DNA, BAC clone: B6Ng01-116N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,920,904 - 81,922,059)(81,799,620 - 81,800,749)
sequence
gaattctttatcttatctttagggttgatggcaggagatttactgctgcc
ctctctcatattctcctgaatctttgtcctattttgcttcgggggctatg
tattgaagaggaaggcagattatcagcttctgttaacttatgttgatatt
ggaagtaccttgagtgactggccagccagaagttctgggaattttggaaa
tcttttgtataccatgtactttccttttctctccctctttcctggaggag
aagccacatgtgtgccttcttggaatctggaaggaacagtcggactactg
caaactgctcttatttttctctacaaaaaaatccagggtgaggtgtcaag
cagtcttagaatgagctgtgctgctgtttgtttctggactcataagtgca
aatatcaagctctgaccagagtgccatgcagctgaagagaaagagtctat
aggaattcttgtggggaggaatacctatggcactatgcattggcactctt
ccacacttaaggtcatttgctttacggcagtaaatgccccaatgttgagt
atgtttgaaatgtgtagtgaacagtctatgctatcaactgtccgaatatc
tgcttggtctttttatagacattggtttttcatgaagtatttcttggttg
gcacatttaatgctcacgttttagtttcggttacttcattaaccttaatg
aaagatattcaagattcaacttggcatcctagttcttgctttagataatc
atatttaactgtccaattatgttttcacgggtgatagtaagtataaaaat
ccactggcccgagcagatttacaatagaaactctcattccatagaataga
gctggttgagtttaagggggtttcttgaccacctaatgaatcttaccatt
tgtacttgaaaagcaacaactcagaacatagagttgtatcatttcctcaa
agtgaaagggatactgatgatgggaactctgcagctcgtcgatattcata
gcattataatttatccttataaaaataaatattattacttagagagcatt
aaatctgagagctttcagtgaagtagctcattggcaaatgcttgagattg
cagcatgaagaaagctgttgtttaatgcctcagaactcagtaaaa
gaattctctcagttctcccgggattggctttattaggcgattctgtagct
ttctttacgtttactgggaaatggggtggggcagggaagaggggcttaca
agtctatcttctgtcacataggcttattccacatagcatcaccatcagag
aaagaaagtgtgagcatctatgtttaattttaattgagtatcttagaaag
tgaaaaggccaggtttacaaaagaacaagttatatctgtgagaagaatcc
ttggtcttgatttcaaataataaagtgaggaaaaatggagagggaattgt
aactacataaacaagttgaaattcaaatttaattcagtcactaggaggga
ggagcagaagcaagagtgacttcttgacaaaaccaaaccatgtaagccca
gcttcaagttatggtattggagtttcccaatagatgtccaatgttgaagg
gaaaaaatgcttgtgaaatattaccatgacaaaggcatcaggctctagcg
gagaaacatgtaattactgtgtgtggtcaacagatggcagcatttataca
tatggatgcatatcagggtttattaataatattaatggtaagttctcaaa
ggtgttactataaaaaaggtggcctttgtgatttggcaaatttatattat
tttattagtgcttcttttttagttagtatctttttttctttttgtaacat
tattcttctatttccactggtcacttttgttacagttgtatctcttttat
gaaagaaactttcaaaacaacgatacttcacgtccacaaacacacacaca
cacacacacacacacacacacacaaacacacacacacatacacacaatca
caatcaaaatttgatttctatgaagctgaacaaaacgtggagagactgtc
acctgggtatccacttggtaatgatcatgaggccactgtgaggtcacagc
tttctttctttctttgtttctttgtttctttcctcctttctattcagaaa
gtggggttcaaatggggctatctgggtttaatctatcatggcctctggcc
agtctgtaaatgcccatagctggttcggtcgtgttttgattacagagatt
agggcctcatgaggctaacatagccaacacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81920904_81922059
seq2: B6Ng01-116N05.b_48_1192 (reverse)

seq1  TTTTACATGAGTTCTGA-GCATTAAACACAGGCTCTCCTTCATGCTTGCA  49
      |||||| |||||||||| ||||||||||   ||| | |||||||||   |
seq2  TTTTAC-TGAGTTCTGAGGCATTAAACAACAGCT-TTCTTCATGCTGCAA  48

seq1  TCTCAAGCATTTTGCCCACTGAGCTACTTCACTGAAAGCCTCTTCAGATT  99
      ||||||||||||   ||| ||||||||||||||||||| ||| ||||| |
seq2  TCTCAAGCATTT--GCCAATGAGCTACTTCACTGAAAG-CTC-TCAGA-T  93

seq1  TTAATGCTTCTCTAAAGTAATAATATTTATATTTATAAGGATAAATTATA  149
      ||||||| ||||| |||||||||||||||| |||||||||||||||||||
seq2  TTAATGC-TCTCT-AAGTAATAATATTTATTTTTATAAGGATAAATTATA  141

seq1  ATGCTATGAATTATCGACGAGCTGCAGAGTTCCCCATCATCAGTATCCCT  199
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  ATGCTATGAA-TATCGACGAGCTGCAGAGTT-CCCATCATCAGTATCCCT  189

seq1  TTCACTTTGAGGAAATGATACAACTCTATGTTCCTGAGTTGTTGCTTTTC  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTCACTTTGAGGAAATGATACAACTCTATGTT-CTGAGTTGTTGCTTTTC  238

seq1  AAGTACAAATGGTAAGATTCATTAGGTGGTCAAGAAACCCCCTTAAACTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACAAATGGTAAGATTCATTAGGTGGTCAAGAAACCCCCTTAAACTC  288

seq1  AACCAGCTCTATTCTATGGAATGAGAGTTTCTATTGTAAATCTGCTCGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTCTATTCTATGGAATGAGAGTTTCTATTGTAAATCTGCTCGGG  338

seq1  CCAGTGGATTTTTATACTTACTATCACCCGTGAAAACATAATTGGACAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGATTTTTATACTTACTATCACCCGTGAAAACATAATTGGACAGT  388

seq1  TAAATATGATTATCTAAAGCAAGAACTAGGATGCCAAGTTGAATCTTGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGATTATCTAAAGCAAGAACTAGGATGCCAAGTTGAATCTTGAA  438

seq1  TATCTTTCATTAAGGTTAATGAAGTAACCGAAACTAAAACGTGAGCATTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCATTAAGGTTAATGAAGTAACCGAAACTAAAACGTGAGCATTA  488

seq1  AATGTGCCAACCAAGAAATACTTCATGAAAAACCAATGTCTATAAAAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGCCAACCAAGAAATACTTCATGAAAAACCAATGTCTATAAAAAGA  538

seq1  CCAAGCAGATATTCGGACAGTTGATAGCATAGACTGTTCACTACACATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGATATTCGGACAGTTGATAGCATAGACTGTTCACTACACATTT  588

seq1  CAAACATACTCAACATTGGGGCATTTACTGCCGTAAAGCAAATGACCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACTCAACATTGGGGCATTTACTGCCGTAAAGCAAATGACCTTA  638

seq1  AGTGTGGAAGAGTGCCAATGCATAGTGCCATAGGTATTCCTCCCCACAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGAAGAGTGCCAATGCATAGTGCCATAGGTATTCCTCCCCACAAG  688

seq1  AATTCCTATAGACTCTTTCTCTTCAGCTGCATGGCACTCTGGTCAGAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTATAGACTCTTTCTCTTCAGCTGCATGGCACTCTGGTCAGAGCT  738

seq1  TGATATTTGCACTTATGAGTCCAGAAACAAACAGCAGCACAGCTCATTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTGCACTTATGAGTCCAGAAACAAACAGCAGCACAGCTCATTCT  788

seq1  AAGACTGCTTGACACCTCACCCTGGATTTTTTTGTAGAGAAAAATAAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGCTTGACACCTCACCCTGGATTTTTTTGTAGAGAAAAATAAGAG  838

seq1  CAGTTTGCAGTAGTCCGACTGTTCCTTCCAGATTCCAAGAAGGCACACAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTGCAGTAGTCCGACTGTTCCTTCCAGATTCCAAGAAGGCACACAT  888

seq1  GTGGCTTCTCCTCCAGGAAAGAGGGAGAGAAAAGGAAAGTACATGGTATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCTCCTCCAGGAAAGAGGGAGAGAAAAGGAAAGTACATGGTATA  938

seq1  CAAAAGATTTCCAAAATTCCCAGAACTTCTGGCTGGCCAGTCACTCAAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGATTTCCAAAATTCCCAGAACTTCTGGCTGGCCAGTCACTCAAGG  988

seq1  TACTTCCAATATCAACATAAGTTAACAGAAGCTGATAATCTGCCTTCCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCAATATCAACATAAGTTAACAGAAGCTGATAATCTGCCTTCCTC  1038

seq1  TTCAATACATAGCCCCCGAAGCAAAATAGGACAAAGATTCAGGAGAATAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACATAGCCCCCGAAGCAAAATAGGACAAAGATTCAGGAGAATAT  1088

seq1  GAGAGAGGGCAGCAGTAAATCTCCTGCCATCAACCCTAAAGATAAGATAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGGGCAGCAGTAAATCTCCTGCCATCAACCCTAAAGATAAGATAA  1138

seq1  AGAATTC  1156
      |||||||
seq2  AGAATTC  1145

seq1: chr3_81799620_81800749
seq2: B6Ng01-116N05.g_70_1202

seq1  GAATTCTCTCAGTTCTCCCGGGATTGGCTTTATTAGGCGATTCTGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAGTTCTCCCGGGATTGGCTTTATTAGGCGATTCTGTAGCT  50

seq1  TTCTTTACGTTTACTGGGAAATGGGGTGGGGCAGGGAAGAGGGGCTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTACGTTTACTGGGAAATGGGGTGGGGCAGGGAAGAGGGGCTTACA  100

seq1  AGTCTATCTTCTGTCACATAGGCTTATTCCACATAGCATCACCATCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATCTTCTGTCACATAGGCTTATTCCACATAGCATCACCATCAGAG  150

seq1  AAAGAAAGTGTGAGCATCTATGTTTAATTTTAATTGAGTATCTTAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTGTGAGCATCTATGTTTAATTTTAATTGAGTATCTTAGAAAG  200

seq1  TGAAAAGGCCAGGTTTACAAAAGAACAAGTTATATCTGTGAGAAGAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGGCCAGGTTTACAAAAGAACAAGTTATATCTGTGAGAAGAATCC  250

seq1  TTGGTCTTGATTTCAAATAATAAAGTGAGGAAAAATGGAGAGGGAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTGATTTCAAATAATAAAGTGAGGAAAAATGGAGAGGGAATTGT  300

seq1  AACTACATAAACAAGTTGAAATTCAAATTTAATTCAGTCACTAGGAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATAAACAAGTTGAAATTCAAATTTAATTCAGTCACTAGGAGGGA  350

seq1  GGAGCAGAAGCAAGAGTGACTTCTTGACAAAACCAAACCATGTAAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAAGCAAGAGTGACTTCTTGACAAAACCAAACCATGTAAGCCCA  400

seq1  GCTTCAAGTTATGGTATTGGAGTTTCCCAATAGATGTCCAATGTTGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAAGTTATGGTATTGGAGTTTCCCAATAGATGTCCAATGTTGAAGG  450

seq1  GAAAAAATGCTTGTGAAATATTACCATGACAAAGGCATCAGGCTCTAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAATGCTTGTGAAATATTACCATGACAAAGGCATCAGGCTCTAGCG  500

seq1  GAGAAACATGTAATTACTGTGTGTGGTCAACAGATGGCAGCATTTATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACATGTAATTACTGTGTGTGGTCAACAGATGGCAGCATTTATACA  550

seq1  TATGGATGCATATCAGGGTTTATTAATAATATTAATGGTAAGTTCTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGCATATCAGGGTTTATTAATAATATTAATGGTAAGTTCTCAAA  600

seq1  GGTGTTACTATAAAAAAGGTGGCCTTTGTGATTTGGCAAATTTATATTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTACTATAAAAAAGGTGGCCTTTGTGATTTGGCAAATTTATATTAT  650

seq1  TTTATTAGTGCTTCTTTTTTAGTTAGTATCTTTTTT--CTTTTGTAACAT  698
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  TTTATTAGTGCTTCTTTTTTAGTTAGTATCTTTTTTTCTTTTTGTAACAT  700

seq1  TATTCTTCTATTTCCACTGGTCAC-TTTGTTACAGTTGTATCTCTTTTAT  747
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATTCTTCTATTTCCACTGGTCACTTTTGTTACAGTTGTATCTCTTTTAT  750

seq1  GAAAGAAAC-TTCAAAACAACGATACTTCACGTCCACAAACACACACACA  796
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAACTTTCAAAACAACGATACTTCACGTCCACAAACACACACACA  800

seq1  CACACACACACACACACACACACAAACACACACACACATACACACAATCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACAAACACACACACACATACACACAATCA  850

seq1  CAATCAAAATTTGATTTCTATGAAGCTGAACAAAACGTGAAGAGACTGTC  896
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAATCAAAATTTGATTTCTATGAAGCTGAACAAAACGTGGAGAGACTGTC  900

seq1  ACCTGGGTATCCAC-TGGT-ATGATCA-GAGGCCACTGTGAGGTCACAGC  943
      |||||||||||||| |||| ||||||| ||||||||||||||||||||||
seq2  ACCTGGGTATCCACTTGGTAATGATCATGAGGCCACTGTGAGGTCACAGC  950

seq1  TTTTCTTCTTTCTTTGTTTCTTTGTTTCTTTCCTCCTTTCTTTTTCAGAA  993
      |||  ||||||||||||||||||||||||||||||||||| | |||||||
seq2  TTTCTTTCTTTCTTTGTTTCTTTGTTTCTTTCCTCCTTTC-TATTCAGAA  999

seq1  AGTGGGTTTC-AATTGTGCTATCTGGGTTTTAATCTATCATGGCCTCTTG  1042
      |||||| ||| ||| | |||||||||| |||||||||||||||||||| |
seq2  AGTGGGGTTCAAATGGGGCTATCTGGG-TTTAATCTATCATGGCCTCTGG  1048

seq1  CCAGTCTGTAAATGCCCATAGCTGGTTCTGTCCGTGTTTTTTGATTTACA  1092
      |||||||||||||||||||||||||||| |||   || |||||| |||||
seq2  CCAGTCTGTAAATGCCCATAGCTGGTTCGGTC---GTGTTTTGA-TTACA  1094

seq1  GA-TTAAGTGCTTCATGAGGCTTAACATAG-CAACACAAA  1130
      ||  | || || ||||||||| |||||||| |||||||||
seq2  GAGATTAGGGCCTCATGAGGC-TAACATAGCCAACACAAA  1133