BAC Information

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BAC

Clone NameB6Ng01-117D12
Chromosome3 (Build37)
Map Location 134,612,159 - 134,779,268
singlet/doubletdoublet
Overlap geneLOC229837
Upstream geneLOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3
Downstream geneLOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117D12.bB6Ng01-117D12.g
ACCDH922016DH922017
length993889
definitionDH922016|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D12, 5' end.DH922017|Mus musculus domesticus DNA, BAC clone: B6Ng01-117D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,612,159 - 134,613,096)(134,778,510 - 134,779,268)
sequence
gaattcttttagagtttgccctcctctcccttttcctctctacttacaac
tcatcttacgtcctgattctctgttcacgaagatcacacctgttgagtag
tttttacccttatgtggatgacttccgacttccacgggattccttgaatt
aagccttgatttatctggctgtggactgctggatctgactttcgctggtt
gtcttgaaacctccatgataatgattgtgtgaagctcctatctacaagta
tagaggatattattatgaatcattttattgactttttaaaaattgttttt
gttttcacgatggtctttggggtcagggtattaggtggacatcaaaaatg
attgtttgctgtctgtggaaaaggaccttaggatctgaattaagatcgtg
ggaggatttcagtaaaggtgggcctcatatctgtttcacaaacaacaaac
cccaatgtaacttgagagaggaaaatgttcactaagcttgtaggtgattg
tccatatcattgagggaagccaattaagaaattcaaagcaggaacctgaa
gaaaagaactgaaacagacctcacaaaaggacactgtttaatggctccat
tcccattccttgcttaccttgatttcttattccatctaggaccacctgcc
caggagtggtacaacccacagtgggctctccgtaatcaattattaactaa
gaaaacacctacatagtaatgcccacaggattatctgatatattcagttc
ttttattaagattttttcttaataaaagatttattaagatttaggcagtt
ttgacttatgtgataagtttctagtcttaagttaaagaagaaagcaagat
gagtactagtattcagcatgatctgtatgctaacagtggatccatgaaca
actaccctaagcttcttatggcagttctttcttaccatgatgtgcatatc
ctcacactgtgagccaaaataaattctttctactctttctatc
gaattcttttttcagaacgactgccccttacccatggctgtgtcttgaaa
taatttgcctatgcttcttgagttagtatctaaaattcagatattacatc
cccctcttcaatttagataagattagctgctctccgagggaaatgctgct
ctggctgccatattaagcgtatctaaaatcttgttcatctttaccacctc
atgaagaagtttctcttcccctctgtatgcttcagacatcttgtcaagga
ttagctgactgcatttgagtgggtttctttctggtgctcctctaccctgc
tggatattatgactgccgttggagcgctgtgatgctttaatgctgttata
gttctacagcatatagtgagatgaactgttgtgatcttccagcattgttc
tcttttgtttgcttgttcttttgtttaagatcgcattggatatgcagggg
ctgatatattttccaatgaattttaggatttttttcctagttccatgaag
aatggcagaattttgaggggactgtgttgaatttgtagttcatttattta
ttttgaaatatggttatgatacaacatgataaatatttactactcatgag
tctgggagtttatttttaatttaaaaaattttttgtatgtcttctagcac
ttttttttttgtttttcaacttaggtgacacatttatttttttaatggga
tattttatgtatttaattttaaatgttatccccttttccaatttccccct
atcccgtaaacccccattacatcctccctttccctccttctatgagggtg
ctcccccacccacccacccactcccacctcactttccttgcataccctac
ttaaggcatccagctccaaggaccaaggcctctcttcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134612159_134613096
seq2: B6Ng01-117D12.b_43_979

seq1  GAATTCTTTTAGATTTTTCCCTCCTCTAACTTTTCCTCTCTACTTACAAC  50
      ||||||||||||| ||| |||||||||  |||||||||||||||||||||
seq2  GAATTCTTTTAGAGTTTGCCCTCCTCTCCCTTTTCCTCTCTACTTACAAC  50

seq1  TCATCTTACTTCCTGATTCTCTTTTCACGAAACACACTCCTGTTGAGTAG  100
      ||||||||| |||||||||||| ||||||||   ||| ||||||||||||
seq2  TCATCTTACGTCCTGATTCTCTGTTCACGAAGATCACACCTGTTGAGTAG  100

seq1  TTTTTACCCTTATGTGTATGACTTCCATCATCCACAGGAGTCCGTGAATT  150
      |||||||||||||||| |||||||||  | ||||| ||| ||| ||||||
seq2  TTTTTACCCTTATGTGGATGACTTCCGACTTCCACGGGATTCCTTGAATT  150

seq1  CTGCCTAATAGTATTTGGCTGTGGACTGCTGGATCTG--TTTCAAGC-AG  197
        ||||     ||| ||||||||||||||||||||||  ||||  ||  |
seq2  AAGCCTTGATTTATCTGGCTGTGGACTGCTGGATCTGACTTTC--GCTGG  198

seq1  TTGGCGAATGAAACCTCAATGATAATGATTATGTTAAGCTCCTATCTACA  247
      ||| |   ||||||||| |||||||||||| ||| |||||||||||||||
seq2  TTGTC--TTGAAACCTCCATGATAATGATTGTGTGAAGCTCCTATCTACA  246

seq1  AGTATAGAGGATATTATTATGAATCATTTTATTGACTTTTTAAAAATTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGAGGATATTATTATGAATCATTTTATTGACTTTTTAAAAATTGT  296

seq1  TTTTGTTTTCACGATGGTCTTTGGGGTCAGGGTATTAGGTGGACATCAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCACGATGGTCTTTGGGGTCAGGGTATTAGGTGGACATCAAA  346

seq1  AATGATTGTTTGCTGTCTGTGGAAAAGGACCTTAGGATCTGAATTAAGAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTGTTTGCTGTCTGTGGAAAAGGACCTTAGGATCTGAATTAAGAT  396

seq1  CGTGGGAGGATTTCAGTAAAGGTGGGCCTCATATCTGTTTCACAAACAAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGAGGATTTCAGTAAAGGTGGGCCTCATATCTGTTTCACAAACAAC  446

seq1  AAACCCCAATGTAACTTGAGAGAGGAAAATGTTCACTAAGCTTGTAGGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCAATGTAACTTGAGAGAGGAAAATGTTCACTAAGCTTGTAGGTG  496

seq1  ATTGTCCATATCATTGAGGGAAGCCAATTAAGAAATTCAAAGCAGGAACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCATATCATTGAGGGAAGCCAATTAAGAAATTCAAAGCAGGAACC  546

seq1  TGAAGAAAAGAACTGAAACAGACCTCACAAAAGGACACTGTTTAATGGCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAAGAACTGAAACAGACCTCACAAAAGGACACTGTTTAATGGCT  596

seq1  CCATTCCCATTCCTTGCTTACCTTGATTTCTTATTCCATCTAGGACCACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCCCATTCCTTGCTTACCTTGATTTCTTATTCCATCTAGGACCACC  646

seq1  TGCCCAGGAGTGGTACAACCCACAGTGGGCTCTCCGTAATCAATTATTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGGAGTGGTACAACCCACAGTGGGCTCTCCGTAATCAATTATTAA  696

seq1  CTAAGAAAACACCTACATAGTAATGCCCACAGGATTATCTGATATATTCA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAACACCTACATAGTAATGCCCACAGGATTATCTGATATATTCA  746

seq1  GTTCTTTTATTAAGATTTTTTCTTAATAAAAGATTTATTAAGATTTAGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTATTAAGATTTTTTCTTAATAAAAGATTTATTAAGATTTAGGC  796

seq1  AGTTTTGACTTATGTGATAAGTTTCTAGTCTTAAGTTAAAGAAGAAAGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGACTTATGTGATAAGTTTCTAGTCTTAAGTTAAAGAAGAAAGCA  846

seq1  AGATGAGTACTAGTATTCAGCATGATCTGTATGCTAACAGTGGATCCATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTACTAGTATTCAGCATGATCTGTATGCTAACAGTGGATCCATG  896

seq1  AACAACTACCCTAAGCTTCTTATGGCAGTTCTTTCTTACCA  938
      |||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTACCCTAAGCTTCTTATGGCAGTTCTTTCTTACCA  937

seq1: chr3_134778510_134779268
seq2: B6Ng01-117D12.g_204_955 (reverse)

seq1  ATGAAAGGAGAGGCCCTTGGTCCTGTGGAGGCTGGATGCCCTAGTGTAGG  50
      |||||  |||||| |||||||||| |||| |||||||||| ||  |||||
seq2  ATGAA--GAGAGG-CCTTGGTCCT-TGGA-GCTGGATGCCTTA-AGTAGG  44

seq1  GTAATGCCAGGGAAGTGAGGTGGGAGTGGGTGGGTGGGTGGGGGAGCACC  100
      || |||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  GT-ATGCAAGGAAAGTGAGGTGGGAGTGGGTGGGTGGGTGGGGGAGCACC  93

seq1  CTCATAGAAGGAGGGAAAGGGAGGATGTAATGGGGGTTTACGGGATAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGAAGGAGGGAAAGGGAGGATGTAATGGGGGTTTACGGGATAGGG  143

seq1  GGAAATTGGAAAAGGGGATAACATTTGAAATTAAATACATAAAATATCCC  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAAATTGGAAAAGGGGATAACATTTAAAATTAAATACATAAAATATCCC  193

seq1  ATTAAAAAAATAAATGTGTCACCTAAGTTGAAAAACAAAAAAAAAAGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAATAAATGTGTCACCTAAGTTGAAAAACAAAAAAAAAAGTGC  243

seq1  TAGAAGACATACAAAAAATTTTTTAAATTAAAAATAAACTCCCAGACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACATACAAAAAATTTTTTAAATTAAAAATAAACTCCCAGACTCA  293

seq1  TGAGTAGTAAATATTTATCATGTTGTATCATAACCATATTTCAAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGTAAATATTTATCATGTTGTATCATAACCATATTTCAAAATAAA  343

seq1  TAAATGAACTACAAATTCAACACAGTCCCCTCAAAATTCTGCCATTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAACTACAAATTCAACACAGTCCCCTCAAAATTCTGCCATTCTTC  393

seq1  ATGGAACTAGGAAAAAAATCCTAAAATTCATATAAAAATAGAAAAGCCCC  450
      |||||||||||||||||||||||||||||||   |||||| |  ||||||
seq2  ATGGAACTAGGAAAAAAATCCTAAAATTCATTGGAAAATATATCAGCCCC  443

seq1  TGCATAGTCAATGCGATCTTAAACAAAAGAACAAGCAAACAAAAGAGAAC  500
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATCCAATGCGATCTTAAACAAAAGAACAAGCAAACAAAAGAGAAC  493

seq1  ACTGCTGGAAGATCACAATACTTCATCTCACACTATGCTGTAGAACCATA  550
      | |||||||||||||||| | ||||||||||  ||||||||||||| |||
seq2  AATGCTGGAAGATCACAACAGTTCATCTCACTATATGCTGTAGAACTATA  543

seq1  ACAGCAACAAAGCATCACACTGCTACAACGGCAGACATGCGATCCAACAG  600
      ||||||  |||||||||||  ||| ||||||||| |||   ||||| |||
seq2  ACAGCATTAAAGCATCACAGCGCTCCAACGGCAGTCATAATATCCAGCAG  593

seq1  GGTAGAGGAGCACCAAAAAGAAACCCACACAAATGCAGTCAACTAATCCT  650
      ||||||||||||||| |||||||||||| |||||||||||| ||||||||
seq2  GGTAGAGGAGCACCAGAAAGAAACCCACTCAAATGCAGTCAGCTAATCCT  643

seq1  TGACAAGATGTCCTAAGCATACACTGGGGAAGAGAAACTTCTTCATGATG  700
      ||||||||||||  |||||||||  ||||||||||||||||||||||| |
seq2  TGACAAGATGTCTGAAGCATACAGAGGGGAAGAGAAACTTCTTCATGAGG  693

seq1  TGGTACTGAAGAAACTGATTTTCTATATGCATAATATTGAAGCCAGAGCA  750
      |||||  || |||   ||||||  ||| || |||||| | ||||||||||
seq2  TGGTAAAGATGAACAAGATTTTAGATACGCTTAATATGGCAGCCAGAGCA  743

seq1  GTATTTCCC  759
      | |||||||
seq2  GCATTTCCC  752