BAC Information

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BAC

Clone NameB6Ng01-117H20
Chromosome3 (Build37)
Map Location 154,031,459 - 154,174,631
singlet/doubletdoublet
Overlap geneLOC100040810
Upstream geneSt6galnac3, EG545578, Asb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8
Downstream geneLOC100040829, Tyw3, Cryz, BC007180, Tnni3k, Fpgt, Lrrc44, EG383956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117H20.bB6Ng01-117H20.g
ACCDH922217DH922218
length990743
definitionDH922217|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H20, 5' end.DH922218|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,031,459 - 154,032,256)(154,173,890 - 154,174,631)
sequence
gaattcagcaatatttataaaacacttctgaagttaagggttatatacct
ttaggtctgaaactgtaagaattaagctaatttgtcaactctttgggttc
cttctgttgaagtgtttgtaaatcatgggtgtttatcaagtagtctaagt
taacgtcacttcttctggcgtgaatggtagagttaacatggcatccagtg
ccttctcattaaagttctggcaacaattggacagtattgaggaccgtgag
gtatcatacagagaatgcttctacacactgcctgtaaattatctgaggat
gctgttgagagatagctcagtggttaggttatttgttgttctgcagagaa
tccgagactctgtgaatcgacctgagtctgcagaagtggctagaacccac
cagcacaccaccagaaattctttttggtgcgtttctatctatggagctca
actatgcaatgtaaggcagaccaatgcatgcatgccattagtgaatgtct
tacttagggttttactgctgtgaacagacaccatgaccaaggcaactctt
ttttttttaagacttattttatttatttcatgtatatgagtacactgtag
ctatcttcagacacaccagaaaagggcaacagacctcattacaaatgatt
gtgagcctccatgtggttgctgggaattgaactcaggacctctggaagaa
cagttgatgctcttaaccactgaggcatctctccagcccccaaggcaact
cttataaggacaacattcaattggggctggcttacaagttcaggcaactc
ttataagggacaacattcaattggggctggcttacaagttcaggttcagt
ccattatcatctaaggcaggaacatgacagcacccaggcaggtatggtgc
agaggaagtgaaagacctacatctgcatcttgaaggctgttagcagaata
ctgactttcagcagctagatgagggtcttaaagcccatac
gaattcacccacatcagtctcccctggtcactgctttgcctttcggggaa
aaaaatattttcatctgagtttgcaagttttacataactttcaaggcctt
ccagactgatgcttccgctgactgcgaaccaggaatgacctgaaaacctt
gcagaaagcagtgcagacaaaggtggtaatgacagtaacacccaaggcca
cccttccctgcgaccagggaactgaggaacagactaaagatatcagaaga
caaatgttaaatatctaccacaagatgaaagaattccttattctgtgatt
gatgggagcccgaggaacagacgccacgtgttgagacgacagggcagaaa
acgtgagtacaaaggtattgtgcaaacaaagaacaccatctccatgtggg
agagggcagagagtccaggatgtgagccccagcacaccgcctactataga
tacctgaatctgggatttgtatctgcaatgttctctgtggttaggtaatt
gtttacatagctgtgaagagcagttttgtatgggtatcctgagtgagaat
ttgcaagtgaagaaaacaggaacacaaacttgcagtgtttccaagacata
tctaaataaacacgacatgggattcagaactgggtcacaccgagggaagc
aggtgggatgtgagaccttgtcagcctggaaatttaccatctttggaaaa
gggagaccaacaggatgtggggctgggagaggggggtaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_154031459_154032256
seq2: B6Ng01-117H20.b_42_839

seq1  GAATTCAGCAATATTTATAAAACACTTCTGAAGTTAAGGGTTATATACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAATATTTATAAAACACTTCTGAAGTTAAGGGTTATATACCT  50

seq1  TTAGGTCTGAAACTGTAAGAATTAAGCTAATTTGTCAACTCTTTGGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTCTGAAACTGTAAGAATTAAGCTAATTTGTCAACTCTTTGGGTTC  100

seq1  CTTCTGTTGAAGTGTTTGTAAATCATGGGTGTTTATCAAGTAGTCTAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTGAAGTGTTTGTAAATCATGGGTGTTTATCAAGTAGTCTAAGT  150

seq1  TAACGTCACTTCTTCTGGCGTGAATGGTAGAGTTAACATGGCATCCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTCACTTCTTCTGGCGTGAATGGTAGAGTTAACATGGCATCCAGTG  200

seq1  CCTTCTCATTAAAGTTCTGGCAACAATTGGACAGTATTGAGGACCGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCATTAAAGTTCTGGCAACAATTGGACAGTATTGAGGACCGTGAG  250

seq1  GTATCATACAGAGAATGCTTCTACACACTGCCTGTAAATTATCTGAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATACAGAGAATGCTTCTACACACTGCCTGTAAATTATCTGAGGAT  300

seq1  GCTGTTGAGAGATAGCTCAGTGGTTAGGTTATTTGTTGTTCTGCAGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGAGAGATAGCTCAGTGGTTAGGTTATTTGTTGTTCTGCAGAGAA  350

seq1  TCCGAGACTCTGTGAATCGACCTGAGTCTGCAGAAGTGGCTAGAACCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGACTCTGTGAATCGACCTGAGTCTGCAGAAGTGGCTAGAACCCAC  400

seq1  CAGCACACCACCAGAAATTCTTTTTGGTGCGTTTCTATCTATGGAGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACCACCAGAAATTCTTTTTGGTGCGTTTCTATCTATGGAGCTCA  450

seq1  ACTATGCAATGTAAGGCAGACCAATGCATGCATGCCATTAGTGAATGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCAATGTAAGGCAGACCAATGCATGCATGCCATTAGTGAATGTCT  500

seq1  TACTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAACTCTT  550

seq1  TTTTTTTTAAGACTTATTTTATTTATTTCATGTATATGAGTACACTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGACTTATTTTATTTATTTCATGTATATGAGTACACTGTAG  600

seq1  CTATCTTCAGACACACCAGAAAAGGGCAACAGACCTCATTACAAATGATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTCAGACACACCAGAAAAGGGCAACAGACCTCATTACAAATGATT  650

seq1  GTGAGCCTCCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTCCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAA  700

seq1  CAGTTGATGCTCTTAACCACTGAGGCATCTCTCCAGCCCCCAAGGCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGATGCTCTTAACCACTGAGGCATCTCTCCAGCCCCCAAGGCAACT  750

seq1  CTTATAAGGACAACATTCAATTGGGGCTGGCTTACAAGTTCAGGCAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAGGACAACATTCAATTGGGGCTGGCTTACAAGTTCAGGCAAC  798

seq1: chr3_154173890_154174631
seq2: B6Ng01-117H20.g_65_807 (reverse)

seq1  CCCCCTA-CCCCCTCTCCCAGCCCCACATCCTGTTGGTCTCCCTTTTCCA  49
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTACCCCCCTCTCCCAGCCCCACATCCTGTTGGTCTCCCTTTTCCA  50

seq1  AAGATGGTAAATTTCCAGGCTGACAAGGTCTCACATCCCACCTGCTTCCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGTAAATTTCCAGGCTGACAAGGTCTCACATCCCACCTGCTTCCC  100

seq1  TCGGTGTGACCCAGTTCTGAATCCCATGTCGTGTTTATTTAGATATGTCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTGACCCAGTTCTGAATCCCATGTCGTGTTTATTTAGATATGTCT  150

seq1  TGGAAACACTGCAAGTTTGTGTTCCTGTTTTCTTCACTTGCAAATTCTCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACACTGCAAGTTTGTGTTCCTGTTTTCTTCACTTGCAAATTCTCA  200

seq1  CTCAGGATACCCATACAAAACTGCTCTTCACAGCTATGTAAACAATTACC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGATACCCATACAAAACTGCTCTTCACAGCTATGTAAACAATTACC  250

seq1  TAACCACAGAGAACATTGCAGATACAAATCCCAGATTCAGGTATCTATAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACAGAGAACATTGCAGATACAAATCCCAGATTCAGGTATCTATAG  300

seq1  TAGGCGGTGTGCTGGGGCTCACATCCTGGACTCTCTGCCCTCTCCCACAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGGTGTGCTGGGGCTCACATCCTGGACTCTCTGCCCTCTCCCACAT  350

seq1  GGAGATGGTGTTCTTTGTTTGCACAATACCTTTGTACTCACGTTTTCTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGTGTTCTTTGTTTGCACAATACCTTTGTACTCACGTTTTCTGC  400

seq1  CCTGTCGTCTCAACACGTGGCGTCTGTTCCTCGGGCTCCCATCAATCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCGTCTCAACACGTGGCGTCTGTTCCTCGGGCTCCCATCAATCACA  450

seq1  GAATAAGGAATTCTTTCATCTTGTGGTAGATATTTAACATTTGTCTTCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGAATTCTTTCATCTTGTGGTAGATATTTAACATTTGTCTTCTG  500

seq1  ATATCTTTAGTCTGTTCCTCAGTTCCCTGGTCGCAGGGAAGGGTGGCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTAGTCTGTTCCTCAGTTCCCTGGTCGCAGGGAAGGGTGGCCTT  550

seq1  GGGTGTTACTGTCATTACCACCTTTGTCTGCACTGCTTTCTGCAAGGTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTACTGTCATTACCACCTTTGTCTGCACTGCTTTCTGCAAGGTTT  600

seq1  TCAGGTCATTCCTGGTTCGCAGTCAGCGGAAGCATCAGTCTGGAAGGCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTCATTCCTGGTTCGCAGTCAGCGGAAGCATCAGTCTGGAAGGCCT  650

seq1  TGAAAGTTATGTAAAACTTGCAAACTCAGATGAAAATATTTTTTTCCCCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTTATGTAAAACTTGCAAACTCAGATGAAAATATTTTTTTCCCCG  700

seq1  AAAGGCAAAGCAGTGACCAGGGGAGACTGATGTGGGTGAATTC  742
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAAAGCAGTGACCAGGGGAGACTGATGTGGGTGAATTC  743