BAC Information

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BAC

Clone NameB6Ng01-118A12
ChromosomeX (Build37)3 (Build37)
Map Location 60,986,095 - 60,987,28741,059,151 - 41,059,666
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC671878, LOC666695, EG627420
Downstream geneLOC666729, EG627470, 3830417A13Rik, Slitrk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118A12.bB6Ng01-118A12.g
ACCDH922618DH922619
length1,184551
definitionDH922618|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A12, 5' end.DH922619|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,986,095 - 60,987,287)(41,059,151 - 41,059,666)
sequence
gaattcaaaacaagttaattgtagtaaccagtataaataatttcatcaat
gtcatgtcaaggacaaattgaaatgtaattcaatgctcatgtactataga
gaaatatttcctgaagaaagtagacatacaattcaatacctaatctgaca
catttttcccccaccacactgtcattttatcagccattaccctaccatat
ctgttgcttcttttcactgtgtctctagaacaatgttgtgtttcattggg
aaaaaacactctgtatactctgtttattgaatagagtgtgctgatgtatg
ttagagttgtagagcagggtctagagttgtatcaggttgaagaatgattt
gctcagttattgttatcatccagagctcttcaaccacatattcacctgtg
tgttacaacaacaagcataggaatatattagtaaaggtgcaataagtggc
actcccatgccaaagccaactatcagctgtctacttagagatatgtttca
atcaacaggatgaaaatcattcttggtactggaaatctagccagctctcc
agcaatgcagaggttagatatatgtacaacacagctccttcatctatggc
tcaggcaacatgcataagaaaagtcaaatagtttaagagcaagaatatca
ggaagtctgttgtgaaccagactattctagaaatatctgcataaacaaga
caagaacaatgtcagtgtcaatggatatgttaggaaggaaagggaaattt
tacagtgtcccactcccacacaaagaacttctcagaagagaattagcttg
tccaatacagactggttatccttgaaaccatatacatacaaataacacaa
attgacatagcaggatgcatttctctatttgtgcatgcatatacatacac
ttataacaataatagtcttagccttttttattttgtctgagaactctgtt
cagttttacagtattgttttcttggttttggtattttgagctacttattg
tagataagtgtaactgacagtgtgtaactgacaatattttcccattctgt
gtcatccttttagtcataacagtttctttgctttacaaaacccttctaat
tgtttgctgcctttatagtgatttttatgttgttttttgttaaatagcat
cctttttcgaaggtcttcacctaatcaatttgga
gaattctttatatatattggatattagtcctctatctgatttaggatagg
taaagaccctttcccaatctgctggtggcctttttgtcttattgatggtg
tcttttgccttacataagctttgcaattttatgtggtcccatttgtcaat
tcttgatcttacagcacaagccattgctcttcaggaattttccccctgtg
tccatatcttcgaggcttttccccacttttgcctctataggtttcagtgt
ctctggttttatgtggagttctgtgatccacttacatttgaccttagtac
aaggagataggaatggatcaatttgcatttctctacatgttaaccaccag
ttatgccaacaccatttgttgaaaatgctgtcttttttccactggatggt
tttagctcccttgtcaaagttcaagtgatcataggtcagtaggttcattt
ctgggtcttcaattctattccattggtctacttgtctgttgctataccag
taccatgttttttttttttttttgtttttttttttttgtttttttttttt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_60986095_60987287
seq2: B6Ng01-118A12.b_50_1233 (reverse)

seq1  TCCAAATATTGATTTAGGTGAAGACTTTCTGAATAGGATGCTATTTACCA  50
      |||||  ||||| |||||||||||| |||  || ||||||||||||| ||
seq2  TCCAA--ATTGA-TTAGGTGAAGACCTTCGAAAAAGGATGCTATTTAACA  47

seq1  AAAA--CACATAAAAATTCACTAATAAAGGCAGCATACAATTAGAAGGGT  98
      ||||   ||||||||| ||||| |||||||||||| ||||||||||||||
seq2  AAAAACAACATAAAAA-TCACT-ATAAAGGCAGCAAACAATTAGAAGGGT  95

seq1  TTTGTAAAGCAAAGAAAACTGTTAATTGACTAAAAAGGATGACAACAGAA  148
      |||||||||||||| |||||||||  ||||| ||||||||||| ||||||
seq2  TTTGTAAAGCAAAG-AAACTGTTA--TGACT-AAAAGGATGAC-ACAGAA  140

seq1  TGGGAAAATATTTGTCAGTTACACACTGTCAGTTACACTTATCTACAATA  198
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAATA-TTGTCAGTTACACACTGTCAGTTACACTTATCTACAATA  189

seq1  AGTAGCTCAAAATACCAAAACCAAGAAAACAATACTGTAAAACTGAACAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTCAAAATACCAAAACCAAGAAAACAATACTGTAAAACTGAACAG  239

seq1  AGTTCTCAGACAAAATAAAAAAGGCTAAGACTATTATTGTTATAAGTGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCAGACAAAATAAAAAAGGCTAAGACTATTATTGTTATAAGTGTA  289

seq1  TGTATATGCATGCACAAATAGAGAAATGCATCCTGCTATGTCAATTTGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGCATGCACAAATAGAGAAATGCATCCTGCTATGTCAATTTGTG  339

seq1  TTATTTGTATGTATATGGTTTCAAGGATAACCAGTCTGTATTGGACAAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTATGTATATGGTTTCAAGGATAACCAGTCTGTATTGGACAAGC  389

seq1  TAATTCTCTTCTGAGAAGTTCTTTGTGTGGGAGTGGGACACTGTAAAATT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTCTTCTGAGAAGTTCTTTGTGTGGGAGTGGGACACTGTAAAATT  439

seq1  TCCCTTTCCTTCCTAACATATCCATTGACACTGACATTGTTCTTGTCTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCTTCCTAACATATCCATTGACACTGACATTGTTCTTGTCTTG  489

seq1  TTTATGCAGATATTTCTAGAATAGTCTGGTTCACAACAGACTTCCTGATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCAGATATTTCTAGAATAGTCTGGTTCACAACAGACTTCCTGATA  539

seq1  TTCTTGCTCTTAAACTATTTGACTTTTCTTATGCATGTTGCCTGAGCCAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCTCTTAAACTATTTGACTTTTCTTATGCATGTTGCCTGAGCCAT  589

seq1  AGATGAAGGAGCTGTGTTGTACATATATCTAACCTCTGCATTGCTGGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGGAGCTGTGTTGTACATATATCTAACCTCTGCATTGCTGGAGA  639

seq1  GCTGGCTAGATTTCCAGTACCAAGAATGATTTTCATCCTGTTGATTGAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTAGATTTCCAGTACCAAGAATGATTTTCATCCTGTTGATTGAAA  689

seq1  CATATCTCTAAGTAGACAGCTGATAGTTGGCTTTGGCATGGGAGTGCCAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTCTAAGTAGACAGCTGATAGTTGGCTTTGGCATGGGAGTGCCAC  739

seq1  TTATTGCACCTTTACTAATATATTCCTATGCTTGTTGTTGTAACACACAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCACCTTTACTAATATATTCCTATGCTTGTTGTTGTAACACACAG  789

seq1  GTGAATATGTGGTTGAAGAGCTCTGGATGATAACAATAACTGAGCAAATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATATGTGGTTGAAGAGCTCTGGATGATAACAATAACTGAGCAAATC  839

seq1  ATTCTTCAACCTGATACAACTCTAGACCCTGCTCTACAACTCTAACATAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAACCTGATACAACTCTAGACCCTGCTCTACAACTCTAACATAC  889

seq1  ATCAGCACACTCTATTCAATAAACAGAGTATACAGAGTGTTTTTTCCCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCACACTCTATTCAATAAACAGAGTATACAGAGTGTTTTTTCCCAA  939

seq1  TGAAACACAACATTGTTCTAGAGACACAGTGAAAAGAAGCAACAGATATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACACAACATTGTTCTAGAGACACAGTGAAAAGAAGCAACAGATATG  989

seq1  GTAGGGTAATGGCTGATAAAATGACAGTGTGGTGGGGGAAAAATGTGTCA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTAATGGCTGATAAAATGACAGTGTGGTGGGGGAAAAATGTGTCA  1039

seq1  GATTAGGTATTGAATTGTATGTCTACTTTCTTCAGGAAATATTTCTCTAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGTATTGAATTGTATGTCTACTTTCTTCAGGAAATATTTCTCTAT  1089

seq1  AGTACATGAGCATTGAATTACATTTCAATTTGTCCTTGACATGACATTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATGAGCATTGAATTACATTTCAATTTGTCCTTGACATGACATTGA  1139

seq1  TGAAATTATTTATACTGGTTACTACAATTAACTTGTTTTGAATTC  1193
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTATTTATACTGGTTACTACAATTAACTTGTTTTGAATTC  1184

seq1: chr3_41059151_41059666
seq2: B6Ng01-118A12.g_71_579 (reverse)

seq1  AAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATA  50
      |||||   ||||||||||||||||  ||||||||| ||||||||||||||
seq2  AAAAA---CATGGTACTGGTATAGCAACAGACAAGTAGACCAATGGAATA  47

seq1  GAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTC  100
      ||||||||||| |||||| ||| | ||  ||||||| |||||||| ||| 
seq2  GAATTGAAGACCCAGAAATGAACCTACTGACCTATGATCACTTGAACTTT  97

seq1  GACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAA  147

seq1  ATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATC  200
      |||||| ||||| ||||||| |||| ||||||||  ||||| ||||||||
seq2  ATGGTGTTGGCATAACTGGTGGTTAACATGTAGAGAAATGCAAATTGATC  197

seq1  CACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGC  250
      || ||||||||||||||||||||||||||| |||||||||||  |||| |
seq2  CATTCCTATCTCCTTGTACTAAGGTCAAATGTAAGTGGATCACAGAACTC  247

seq1  CACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAG  300
      ||||||||||||||||||||||||| ||||||||  ||||||||||||||
seq2  CACATAAAACCAGAGACACTGAAACCTATAGAGGCAAAAGTGGGGAAAAG  297

seq1  CCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGG  350
      ||| |||||||||| |||||||| |||||||||     ||| ||||||||
seq2  CCTCGAAGATATGGACACAGGGGGAAAATTCCT-----GAAGAGCAATGG  342

seq1  CTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAA  400
      |||||||||||||||  ||||| ||||||||||||| ||| ||| |||||
seq2  CTTGTGCTGTAAGATCAAGAATTGACAAATGGGACCACATAAAATTGCAA  392

seq1  AGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAAC  449
      ||||| || ||||||||||||||| ||||||||||||||||| ||||| |
seq2  AGCTTATGTAAGGCAAAAGACACCATCAATAAGACAAAAAGGCCACCAGC  442

seq1  AGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATAT  499
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  AGATTGGGAAAGGGTCTTTACCTATCCTAAATCAGATAGAGGACTAATAT  492

seq1  CCAATATATATCAAGAA  516
      ||||||||||| |||||
seq2  CCAATATATATAAAGAA  509