BAC Information

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BAC

Clone NameB6Ng01-118C07
Chromosome3 (Build37)10 (Build37)
Map Location 41,059,227 - 41,059,73726,254,879 - 26,256,034
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118C07.bB6Ng01-118C07.g
ACCDH922700DH922701
length9561,154
definitionDH922700|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C07, 5' end.DH922701|Mus musculus domesticus DNA, BAC clone: B6Ng01-118C07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,227 - 41,059,737)(26,254,879 - 26,256,034)
sequence
gaattctttgttcagctctgagccccatcttttaatggggttattttatt
ttctggagtacaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacagtgtcttttgccttgctgaagctttacaacttta
tgaggtcccatttatcaattctccctcttacagcacaagacattgctctt
ctattcaggaatttttcccctgtacccttatcttcaaggcttttccctac
tttctcctctgtaagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaagagatgagaatggatcaatttgc
attcttctacatgataactgccagttgtgccagcaccatttgttgaaaat
gctgtctttttttccactggatggttttagctcccttgtcaaaggtcaag
tgaccacaggtgtgaggtttcatctctgggtcttcatcaattctcttcca
ttggtctacttgtctgtccttataccagtaccatgcagtttttaacacaa
ttgctctgtagtacagctttaggtcaggcatggtgattccaccagaggtt
cttttatccttgagaagagtttttgctaccctaggttttttgttattcca
gatgaatctgctgattgtcctttctaattcgttcaagaattgggttggaa
ttttgatggggattgcattgaatctgtaaattgcttttggcaagatagcc
atttttactatattgatcctgccaatccatgagcatgggagatctttcca
tcttctgagatcttctttaatttctttcttcagagacttgaagttcttat
catacagatctttcacttccttagttagagtcatgccaaggtatttgata
ttattt
gaattccagcaataaatattaatatcaagcccaattatttccttaaaaga
tacctttccatgaaaagctttatgtttaatgatagttaccaaagctccta
taaatattgatatgatcacgtgtatactaataataattttaataagaata
taggtagaggcttttaaacatttagaagcataggttcacaaaaattggta
attttaagttatatgggaaaagtattattagttaataaaaggcttttgaa
tacaaaatgaaatatacacacacatgttatcacaaaggagtagattagaa
atatgtgttgggaaaacccaaaaaattctaaatttctcacaattagatac
aatgttttatatgaatgtatatttgcatatctgtataagctcttgcattc
atgtataagaaacatctattaaatttgtgttgatagatttgaaaaaaata
ttgtttttaaaatgtcaatgtttctctttctacacacacacatacacaca
cacacatatatatatgtataatggagaatcttcttttttgtgatttattt
aattttatgtctatgaatgttttgtctgcttgtgtgcatgtgtacatgtg
catgcaatgcctgtgaatgtcagaagagttacaaatgaagctacatctgt
tactgaagttatagatgcctgtgaaccatctgtgggtacttgtaactaaa
cctaggtcgtctgcaagagcaacaagtgttttaaccacagaaccctccct
ctagcccccactgtatttttttttttaatttatggctaataatagaaaaa
caaacaaagtgagcaaaatctttgaggtttacaggggacaatccagtttt
ttacacatgtaacaaattactgggatggggatgggccagtcagtctactg
gggatatgtgtggactctcagaacccctaaggctatgtttctctcatcaa
atggcatacatacaatagagcaactgtacagagttcaggattgggggatt
ctaaaaccactagatttgaagaacagaccacatatttattgatgtagtaa
cacggttacccaatagaataaccgagaaaaggtattaatggattaccatt
tagagcttgcctccaggcttcaatagccagctgtccctgcgtgtctgctg
ctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059227_41059737
seq2: B6Ng01-118C07.b_49_561 (reverse)

seq1  CACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTG  50
      ||||||| ||||||||||| ||| ||||||||||||||||||||||||||
seq2  CACACCTGTGGTCACTTGACCTTTGACAAGGGAGCTAAAACCATCCAGTG  50

seq1  G-AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTA  99
      | ||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  GAAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGCAGTTA  100

seq1  TCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGT  149
      |||||||||||||||| |||||||||| ||  ||||| ||||||||||||
seq2  TCATGTAGAAGAATGCAAATTGATCCATTCTCATCTCTTTGTACTAAGGT  150

seq1  CAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAAC  199
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  CAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACACTGAAAC  200

seq1  TTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAA  249
      ||| |||||||||||| ||||||||||||||||||| ||  |||||||||
seq2  TTACAGAGGAGAAAGTAGGGAAAAGCCTTGAAGATAAGGGTACAGGGGAA  250

seq1  AAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGA  299
      ||||||||| |||||| ||||||| ||||||||||||||  |||||| ||
seq2  AAATTCCTGAATAGAAGAGCAATGTCTTGTGCTGTAAGAGGGAGAATTGA  300

seq1  CAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCG  349
       |||||||||||||| ||  || |||||||| |||||||||||||||| |
seq2  TAAATGGGACCTCATAAAGTTGTAAAGCTTCAGCAAGGCAAAAGACACTG  350

seq1  TCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACCTAT  398
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTACCTAT  400

seq1  CCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAA  448
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAGAA  450

seq1  GGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGC  498
      |||| | |||||||||| ||||||||||||||||| ||||||||||||||
seq2  GGTGTACTCCAGAAAATAAAATAACCCCATTAAAAGATGGGGCTCAGAGC  500

seq1  TAAACAAAGAATT  511
      | |||||||||||
seq2  TGAACAAAGAATT  513

seq1: chr10_26254879_26256034
seq2: B6Ng01-118C07.g_69_1222

seq1  GAATTCCAGCAATAAATATTAATATCAAGCCCAATTATTTCCTTAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCAATAAATATTAATATCAAGCCCAATTATTTCCTTAAAAGA  50

seq1  TACCTTTCCATGAAAAGCTTTATGTTTAATGATAGTTACCAAAGCTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCCATGAAAAGCTTTATGTTTAATGATAGTTACCAAAGCTCCTA  100

seq1  TAAATATTGATATGATCACGTGTATACTAATAATAATTTTAATAAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTGATATGATCACGTGTATACTAATAATAATTTTAATAAGAATA  150

seq1  TAGGTAGAGGCTTTTAAACATTTAGAAGCATAGGTTCACAAAAATTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGAGGCTTTTAAACATTTAGAAGCATAGGTTCACAAAAATTGGTA  200

seq1  ATTTTAAGTTATATGGGAAAAGTATTATTAGTTAATAAAAGGCTTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTTATATGGGAAAAGTATTATTAGTTAATAAAAGGCTTTTGAA  250

seq1  TACAAAATGAAATATACACACACATGTTATCACAAAGGAGTAGATTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATGAAATATACACACACATGTTATCACAAAGGAGTAGATTAGAA  300

seq1  ATATGTGTTGGGAAAACCCAAAAAATTCTAAATTTCTCACAATTAGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTTGGGAAAACCCAAAAAATTCTAAATTTCTCACAATTAGATAC  350

seq1  AATGTTTTATATGAATGTATATTTGCATATCTGTATAAGCTCTTGCATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTATATGAATGTATATTTGCATATCTGTATAAGCTCTTGCATTC  400

seq1  ATGTATAAGAAACATCTATTAAATTTGTGTTGATAGATTTGAAAAAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAAGAAACATCTATTAAATTTGTGTTGATAGATTTGAAAAAAATA  450

seq1  TTGTTTTTAAAATGTCAATGTTTCTCTTTCTACACACACACATACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTAAAATGTCAATGTTTCTCTTTCTACACACACACATACACACA  500

seq1  CACACATATATATATGTATAATGGAGAATCTTCTTTTTTGTGATTTATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATATATATATGTATAATGGAGAATCTTCTTTTTTGTGATTTATTT  550

seq1  AATTTTATGTCTATGAATGTTTTGTCTGCTTGTGTGCATGTGTACATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATGTCTATGAATGTTTTGTCTGCTTGTGTGCATGTGTACATGTG  600

seq1  CATGCAATGCCTGTGAATGTCAGAAGAGTTACAAATGAAGCTACATCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAATGCCTGTGAATGTCAGAAGAGTTACAAATGAAGCTACATCTGT  650

seq1  TACTGAAGTTATAGATGCCTGTGAACCATCTGTGGGTACTTGTAACTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGTTATAGATGCCTGTGAACCATCTGTGGGTACTTGTAACTAAA  700

seq1  CCTAGGTCGTCTGCAAGAGCAACAAGTGTTTTAACCACAGAACCCTCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCGTCTGCAAGAGCAACAAGTGTTTTAACCACAGAACCCTCCCT  750

seq1  CTAGCCCCCACTGTATTTTTTTTTTTAATTTATGGCTAATAATAGAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCCCCACTGTATTTTTTTTTTTAATTTATGGCTAATAATAGAAAAA  800

seq1  CAAACAAAGTGAGCAAAATCTTTGAGGTTTACAGGGGACAATCCAGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAGTGAGCAAAATCTTTGAGGTTTACAGGGGACAATCCAGTTTT  850

seq1  TTACACATGTAACAAATTACT-GGATGGGGATGGGCCAGTCAGTCTACTG  899
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTACACATGTAACAAATTACTGGGATGGGGATGGGCCAGTCAGTCTACTG  900

seq1  TGGATATGTGTGGACTCTCAGAACCCCTTAAGGCTATGTTTCTCTCATCA  949
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGGATATGTGTGGACTCTCAGAACCCC-TAAGGCTATGTTTCTCTCATCA  949

seq1  AATGGCATACAATACAATAGAGCAACTGTACAGAGTTCAGAATTGGGGGA  999
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  AATGGCATAC-ATACAATAGAGCAACTGTACAGAGTTCAGGATTGGGGGA  998

seq1  TTCTAAAAACCACTAGATTTGAAGAACAGACCACAATATTTATTTGATGT  1049
      |||| ||||||||||||||||||||||||||||| ||||||| |||||||
seq2  TTCT-AAAACCACTAGATTTGAAGAACAGACCAC-ATATTTA-TTGATGT  1045

seq1  AGTAACAC-GTTACCCAATAGATATAACAGA-AAAAAGTATATAATGAAT  1097
      |||||||| ||||||||||||| ||||| || |||| |||| ||||| ||
seq2  AGTAACACGGTTACCCAATAGA-ATAACCGAGAAAAGGTAT-TAATGGAT  1093

seq1  TACCATTTCAGAGCTTGCTTCCAGGCTTCCACTAGCCAGCTGCCC---CC  1144
      |||||||| ||||||||| ||||||||| || |||||||||| ||   | 
seq2  TACCATTT-AGAGCTTGCCTCCAGGCTT-CAATAGCCAGCTGTCCCTGCG  1141

seq1  TG-CTGCTGCTGC  1156
      || ||||||||||
seq2  TGTCTGCTGCTGC  1154