BAC Information

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BAC

Clone NameB6Ng01-118D18
Chromosome19 (Build37)3 (Build37)
Map Location 52,102,284 - 52,103,47241,059,278 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042924, LOC100042928, LOC668536, LOC100042936
Downstream geneIns1, LOC100043450, Xpnpep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D18.bB6Ng01-118D18.g
ACCDH922768DH922769
length1,180499
definitionDH922768|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D18, 5' end.DH922769|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,102,284 - 52,103,472)(41,059,278 - 41,059,737)
sequence
gaattcaataataataataataataacaatgataacaataataataataa
tagtcatccccaagagccaaaatctacagttttaaagagaaaatgccact
agatattataaataactgtcaaattattgttaaacaactatcattcttat
gattgttgctggaaaaaaaaccataaatttccttactcagctacaaaccc
cttgacctatgattcaaatgtgctactcagagtggactcactggttcccc
acgggcacaactgttatggggataaccaatttcttgctgatttgatttga
agctgtcgtttcagtgaagctaatctcacacctgctaatgtattagagag
gttgcacactctaaggagcagtctaccatggtttgctgcagagatggact
gaaaactaccttctaaatatttgcttttatacccacaaattaatgatgtc
cttagtcttggtcagagaagcatcctttacagcaagtggagggttaatgc
agggacccaaagctagttaaaataatgagtaaagtactattgagtattca
tttctaaactagacaccatctaaagcttagagaagaaaatcacagaaaag
agggcagaaagaatgcaaaggatccagatgatgatgaggaatcttgcaaa
atgctctttgccaaatacatcatcaatgctatactcatggacatatatca
tttatggttactgacacaagatctgcaaaggactgggtcccttaacattt
tgcatcatagatacaggatgagcttggaaggtgttactccaccccctacc
ccttgatggtgctttggtagttagaggctaccaggagagaaggagacatt
ttctcccatgtaaagccttgttagcccacaatccagacattatttctcat
gcatgctcaaacaaacaagacaaattaaactcaactttttggaaatgggg
gttcaccagtaggagaggtataagagggataagagagtgtatgtgatcac
atacataatatgagtgcatgaaattggaaaaataagaatataaggaaaga
catcacttatacagacatcatcgatgcctgttgagtttgcaaagttccca
ttctataacatttcctagtttggtcctatgctacgagcatttgtgaaaga
agaatcttgcctgatgaatgctacatacaa
tttgttcagttctgagccccattttttaatggggttatttgaatttctgg
agtccaccttcttgagttctttatatatatatatatatatatatatatat
atatatatatatatatatatatatattggatattatatatatatctcatt
taggaatatatagatcctttataatctgttggtggactttttgtcttatt
gacggtatcttttgccttgcagaagctttgcagtttcatgaggtcccatt
tggcaatcctcgatcttacagcacaagccattgctgttctattcaggaat
ttttcccctgtgcccatatcttcgaggcttttccccactttctcctctat
aagtttcagtgtctctggttttatgtgaagttccttgatccacttagatt
tgacgttagtacaaggagataggaatggatcgattcgaattctttacatg
ataacagccagttgtaccagcaccatttgttgaaaatgctgtctttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_52102284_52103472
seq2: B6Ng01-118D18.b_45_1223

seq1  GAATTCAATAATAATAATAATAATAACAATGATAACAATAATAATAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAATAATAATAATAATAACAATGATAACAATAATAATAATAA  50

seq1  TAGTCATCCCCAAGAGCCAAAATCTACAGTTTTAAAGAGAAAATGCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATCCCCAAGAGCCAAAATCTACAGTTTTAAAGAGAAAATGCCACT  100

seq1  AGATATTATAAATAACTGTCAAATTATTGTTAAACAACTATCATTCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTATAAATAACTGTCAAATTATTGTTAAACAACTATCATTCTTAT  150

seq1  GATTGTTGCTGGAAAAAAAACCATAAATTTCCTTACTCAGCTACAAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTGCTGGAAAAAAAACCATAAATTTCCTTACTCAGCTACAAACCC  200

seq1  CTTGACCTATGATTCAAATGTGCTACTCAGAGTGGACTCACTGGTTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCTATGATTCAAATGTGCTACTCAGAGTGGACTCACTGGTTCCCC  250

seq1  ACGGGCACAACTGTTATGGGGATAACCAATTTCTTGCTGATTTGATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGCACAACTGTTATGGGGATAACCAATTTCTTGCTGATTTGATTTGA  300

seq1  AGCTGTCGTTTCAGTGAAGCTAATCTCACACCTGCTAATGTATTAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCGTTTCAGTGAAGCTAATCTCACACCTGCTAATGTATTAGAGAG  350

seq1  GTTGCACACTCTAAGGAGCAGTCTACCATGGTTTGCTGCAGAGATGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCACACTCTAAGGAGCAGTCTACCATGGTTTGCTGCAGAGATGGACT  400

seq1  GAAAACTACCTTCTAAATATTTGCTTTTATACCCACAAATTAATGATGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTACCTTCTAAATATTTGCTTTTATACCCACAAATTAATGATGTC  450

seq1  CTTAGTCTTGGTCAGAGAAGCATCCTTTACAGCAAGTGGAGGGTTAATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTTGGTCAGAGAAGCATCCTTTACAGCAAGTGGAGGGTTAATGC  500

seq1  AGGGACCCAAAGCTAGTTAAAATAATGAGTAAAGTACTATTGAGTATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCCAAAGCTAGTTAAAATAATGAGTAAAGTACTATTGAGTATTCA  550

seq1  TTTCTAAACTAGACACCATCTAAAGCTTAGAGAAGAAAATCACAGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAACTAGACACCATCTAAAGCTTAGAGAAGAAAATCACAGAAAAG  600

seq1  AGGGCAGAAAGAATGCAAAGGATCCAGATGATGATGAGGAATCTTGCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGAAAGAATGCAAAGGATCCAGATGATGATGAGGAATCTTGCAAA  650

seq1  ATGCTCTTTGCCAAATACATCATCAATGCTATACTCATGGACATATATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTTGCCAAATACATCATCAATGCTATACTCATGGACATATATCA  700

seq1  TTTATGGTTACTGACACAAGATCTGCAAAGGACTGGGTCCCTTAACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTTACTGACACAAGATCTGCAAAGGACTGGGTCCCTTAACATTT  750

seq1  TGCATCATAGATACAGGATGAGCTTGGAAGGTGTTACTCCACCCCCTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATAGATACAGGATGAGCTTGGAAGGTGTTACTCCACCCCCTACC  800

seq1  CCTTGATGGTGCTTTGGTAGTTAGAGGCTACCAGGAGAGAAGGAGACATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATGGTGCTTTGGTAGTTAGAGGCTACCAGGAGAGAAGGAGACATT  850

seq1  TTCTCCCATGTAAAGCCTTGTTAGCCCACAATCCAGACATTATTTCTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATGTAAAGCCTTGTTAGCCCACAATCCAGACATTATTTCTCAT  900

seq1  GCATGCTCAAACAAACAAGACAAATTAAACTCAACTTTTTGGAAATGGGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCAAACAAACAAGACAAATTAAACTCAACTTTTTGGAAATGGGG  950

seq1  GTTCACCAGTAGGAGAGGGTATAAGGAGGGATAAGGAGAGTGTATGTGAT  1000
      |||||||||||||||| ||||||| ||||||||| |||||||||||||||
seq2  GTTCACCAGTAGGAGA-GGTATAA-GAGGGATAA-GAGAGTGTATGTGAT  997

seq1  CAACATACATTATATGAGTGCATGAAATTGGAAAATAAAGAATAATAAAG  1050
      | |||||||| ||||||||||||||||||||||||  |||||||   |||
seq2  C-ACATACATAATATGAGTGCATGAAATTGGAAAAATAAGAATA--TAAG  1044

seq1  GAAAGACATCAATTATACAGACATCAATCGATG-CTGTTGAGTGTTGCAA  1099
      ||||||||||| ||||||||||||| ||||||| ||||||||| ||||||
seq2  GAAAGACATCACTTATACAGACATC-ATCGATGCCTGTTGAGT-TTGCAA  1092

seq1  AGTATCTCATTCTAT-ACATTTCCTAGTTTTGGGTTTCTATGCTAACGAG  1148
      ||| || |||||||| ||||||||||||||   | | ||||||| |||||
seq2  AGT-TCCCATTCTATAACATTTCCTAGTTT---GGTCCTATGCT-ACGAG  1137

seq1  CATTTGGTGAAAGAAGAATCTTGTCTGATG-ATGCTAC-TACA  1189
      ||||| ||||||||||||||||| |||||| ||||||| ||||
seq2  CATTT-GTGAAAGAAGAATCTTGCCTGATGAATGCTACATACA  1179

seq1: chr3_41059278_41059737
seq2: B6Ng01-118D18.g_69_572 (reverse)

seq1  AAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATC  50
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  AAAAAAGACAGCATTTTCAACAAATGGTGCTGGTACAACTGGCTGTTATC  50

seq1  ATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCA  100
      ||||| |||||| ||||| |||||| ||||||||||||||||||| ||||
seq2  ATGTA-AAGAATTCGAATCGATCCATTCCTATCTCCTTGTACTAACGTCA  99

seq1  AATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTT  150
      |||||||||||||||||||||  |||||||||||||||||||||||||||
seq2  AATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTT  149

seq1  ATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAA  200
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  ATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGGAAAA  199

seq1  ATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACA  250
      ||||||| |||||||||||||||||||||||||||||| ||| || | ||
seq2  ATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGGATTGCCA  249

seq1  AATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGATACCGTC  299

seq1  AATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACCTATCC  349
      ||||||||||||||  ||||||||||||   ||||||||| ||  | |||
seq2  AATAAGACAAAAAGTCCACCAACAGATT-ATAAAGGATCTATATAT-TCC  347

seq1  TAAATCAGATAGGGGACTAATATCCA------------------------  375
      ||||| |||||      |||||||||                        
seq2  TAAATGAGATATATATATAATATCCAATATATATATATATATATATATAT  397

seq1  ----------------------ATATATATCAAGAACTCAAGAAGGTGGA  403
                            |||||||| |||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATAAAGAACTCAAGAAGGTGGA  447

seq1  TTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACA  453
       |||||||| |||||||||||||||||||||||||||||||| || ||||
seq2  CTCCAGAAATTCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACA  497

seq1  AAGAATT  460
      |||||||
seq2  AAGAATT  504