BAC Information

Click to search

BAC

Clone NameB6Ng01-118E07
Chromosome3 (Build37)
Map Location 114,687,857 - 114,688,676
singlet/doubletsinglet
Overlap geneOlfm3
Upstream geneCol11a1, LOC100043220
Downstream geneEG546808, Edg1, Dph5, LOC626061, Slc30a7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118E07.bB6Ng01-118E07.g
ACCDH922792DH922793
length1,2511,115
definitionDH922792|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E07, 5' end.DH922793|Mus musculus domesticus DNA, BAC clone: B6Ng01-118E07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgaaccccatttttttaatggggttgttcgat
tttctgaagtccaccttcttgagttctttatatatgttggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtggtc
tttttgtcttattgacggtgttttttgccttgcagaaactttggagtttc
attaggtcccatttgtcaattctcgatcttacagcacatgccattgctgt
tctgttcaggaattttttcccctgtgcccatatcttcaaggcttttcccc
actttctcctctataagtttcagtgtctctggttttatgtgaagttcctt
gatccacttagatttgaccttagtacaaggagataagtatggatcgattt
gcattcttctacatgataacaaccagttgtgccagaaccaattgttgaaa
atgctgtctttcttccactggatggttttagctcccttgtcgaagatcaa
gtgaccataggtgtgtgggttcatttctgggtcttcaattctattccatt
cgtctacttgtctgtctctataccagtaccatgcagtttttatcacaatt
gctctgtagtaaagctttaggtctggcatggtgattccgccagaagttct
tttatccttgagaagactttttgctatcctaggttttttgttattccaga
caaatttgcaaattgctccttccaattcgttgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgcttttggcaagatagccat
ttttacaatgttgatcctgccaatccatgagcatgggagaactttccatc
ttctgatatcttctttaatttctttcttcagagatttgaagtttttatca
tacagatctttcacctccttagttagagtcacgccagatattttatacta
tttgtgactattgagaaggtattgtttctctaatttctttctcagcctgt
ttattctttgtatagagaaagccattgacttgtttgagttattttatatt
cagctacttcatcggagctgtttatcaggttaggagttctctggtgattt
tagtcacctatatatactatcaatcatctgcaaaggaattggactcctct
ttcattggattcttgatctggtttggttggcattgtctgctaactctaac
atgtgaatatgagtaatgggcatcctgtcgatccccgatcataagggagt
c
gaattccaagcccagggtcaactcaaggactgcctagaacatgggaacac
tggtggaggctaatccaacttagctatatgtcaaaagcaatccttagagg
aacttataaaacaatattgaaggaaaacacatagatctgttcactgatta
aagcaaggacagatttggagcattccttttacaggatgccatggttccag
gagactaagtttccatgaacttttcgtcacgggactgcatccaagcttta
gagcctgtcacccagagtcactactggagtgggtgtcgcaggaagtcaag
ttggagagattcctaatatataataaagacattactaggataaaagtctc
attgtaaactccaaatggagactgttatataaccaatcaaaattccaagt
tgtagagcccagtcccagtggatacaagtacaaatgaactctacacaatg
cttagggaacaatgcaagagaggtgatagagaatccgagcagaagattag
gagtgtgccttcagattgtgcctcctacatgatttcattatttagttagt
tagttagtttatttttgagagtgtattttgattacatttctcctttcctt
tcctctgtgcaagccctgtcatatacacctccctgttctccctcatgtgt
ggcctagagttgtgttatcttaatgattatattatggaatattttagttc
aatattttcatacatactttaaagcggcataaatttttcatttaatccat
tcccaaataaaattgtaataacagacatatggaaaaacagtagctgagta
taacttttgataatcacactttcccatctgagttttataatgttcatact
acccataaagctcacttagagccaaagttaacagtatttgtaaacttcat
atccagaatatttgatatatctttattataagcttagaaaaccaacaaac
cttgatatacttacacataaaggacttgatttttttttatcagttttagc
aattactaaatgggtatgaaacctttttataatactatatgcactagaga
ggatagcattctacaatttaattttctatttatgatttgcatgaacaaga
tcattagtttatcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_114687857_114688676
seq2: B6Ng01-118E07.g_382_1179 (reverse)

seq1  ATGATAAAACTAAATGATCTTGTTTTCATGCAAATCATAAATAGAAAAAT  50
      ||||| ||||| ||||||||||  |||||||||||||||||||| |||||
seq2  ATGAT-AAACT-AATGATCTTG--TTCATGCAAATCATAAATAG-AAAAT  45

seq1  TAAAATTTGTAGAAATTGCTTATTCCTCTCTAGGTTGCATATAGTATTAT  100
      ||||  ||||||||  ||||   ||||||||||  |||||||||||||||
seq2  TAAA--TTGTAGAA--TGCT--ATCCTCTCTAG--TGCATATAGTATTAT  87

seq1  ATAAAGGTTTCAATAACCCATTTTAGTAATTGGCTTAAAACTGATAAAAA  150
      | ||||||||||   ||||| |||||||||||   |||||||||| ||||
seq2  AAAAAGGTTTCA--TACCCA-TTTAGTAATTG--CTAAAACTGAT-AAAA  131

seq1  AAAAATCAAGTTCCTTTATGTGTTAAGTATATCAAGGTTTGTTGGTTTTC  200
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  AAAAATCAAG-TCCTTTATGTG-TAAGTATATCAAGGTTTGTTGGTTTTC  179

seq1  TAAGCTTTATAATAAAGATATATCAAATATTCTGGATATGAAGTTTACAA  250
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGC-TTATAATAAAGATATATCAAATATTCTGGATATGAAGTTTACAA  228

seq1  ATACTGTTAACTTTGGCTCTAAGTGAGCTTTATGGGTAGTATGAACATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTTAACTTTGGCTCTAAGTGAGCTTTATGGGTAGTATGAACATTA  278

seq1  TAAAACTCAGATGGGAAAGTGTGATTATCAAAAGTTATACTCAGCTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTCAGATGGGAAAGTGTGATTATCAAAAGTTATACTCAGCTACTG  328

seq1  TTTTTCCATATGTCTGTTATTACAATTTTATTTGGGAATGGATTAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATATGTCTGTTATTACAATTTTATTTGGGAATGGATTAAATGA  378

seq1  AAAATTTATGCCGCTTTAAAGTATGTATGAAAATATTGAACTAAAATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTATGCCGCTTTAAAGTATGTATGAAAATATTGAACTAAAATATT  428

seq1  CCATAATATAATCATTAAGATAACACAACTCTAGGCCACACATGAGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATATAATCATTAAGATAACACAACTCTAGGCCACACATGAGGGAG  478

seq1  AACAGGGAGGTGTATATGACAGGGCTTGCACAGAGGAAAGGAAAGGAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGGAGGTGTATATGACAGGGCTTGCACAGAGGAAAGGAAAGGAGAA  528

seq1  ATGTAATCAAAATACACTCTCAAAAATAAACTAACTAACTAACTAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCAAAATACACTCTCAAAAATAAACTAACTAACTAACTAAATAA  578

seq1  TGAAATCATGTAGGAGGCACAATCTGAAGGCACACTCCTAATCTTCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCATGTAGGAGGCACAATCTGAAGGCACACTCCTAATCTTCTGCT  628

seq1  CGGATTCTCTATCACCTCTCTTGCATTGTTCCCTAAGCATTGTGTAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATTCTCTATCACCTCTCTTGCATTGTTCCCTAAGCATTGTGTAGAGT  678

seq1  TCATTTGTACTTGTATCCACTGGGACTGGGCTCTACAACTTGGAATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGTACTTGTATCCACTGGGACTGGGCTCTACAACTTGGAATTTTG  728

seq1  ATTGGTTATATAACAGTCTCCATTTGGAGTTTACAATGAGACTTTTATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTATATAACAGTCTCCATTTGGAGTTTACAATGAGACTTTTATCC  778

seq1  TAGTAATGTCTTTATTATAT  820
      ||||||||||||||||||||
seq2  TAGTAATGTCTTTATTATAT  798