BAC Information

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BAC

Clone NameB6Ng01-118J05
Chromosome3 (Build37)
Map Location 40,200,913 - 40,201,987
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118J05.bB6Ng01-118J05.g
ACCDH923017DH923018
length1,2081,056
definitionDH923017|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J05, 5' end.DH923018|Mus musculus domesticus DNA, BAC clone: B6Ng01-118J05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgagcaataccaaatggctgagaagcacctaaaaatgtt
caacatccttaatcaccagggaaatgcaaatcaaaacaaccctgagattc
tacttcacaccagtcagaatggctaagatcaaaaactcaggtgacagcag
atgctgtgaagatgtggagaaagaggaatactcctccattgctggtggga
ctgcaagctggtaccactctgaaaatcagtttggcggttcctcagaaaat
tggacatagtactactggaagatccagcaataccactcctgggcctatac
ccagagatgctccaacttgtaacaaggacacatgttccactatgtttatc
ctagccttattcataatagctagaagctggaaagaacacagatgtccctc
aacagaggaatggatgtagataatatggtacatttacacaatggagtact
attcagctattaaaacaatggatttacgaaattcttagacaaatggatag
atccggaggatatcatcctaagtgaggtaacccagtcacaaaagaacaca
cgtggtatgcactcactgataaatagctattagcccagaagctcagaata
cccaagatacaatttgcaaaacacatgaaactcaagaagaaggaagacca
aagtgtggatactttgatccttcttagaagagggaagaaaatacccatgg
aaggagttacagagacaaagttcagagcagagattaaaggaatgaccatc
cagagactgtcccacctggagatccatcccataaacaatcaccaaaccca
gacactattgcagatgccagcaagagtttgctgacaggagcctgatatag
ctgtctcctgagaggctctgcctatgcctggcaaatatagaagtggatgc
tcacagtcatccattggatggaacacagggtcctcataaaggaggagagc
tagagaaagtacccagagctgaggggtttgcagtcccataggagacacat
atgactaaccagtatcccagagctcctgggactaacctcatcaagaaaat
acgtggtgggactcatgctaaagctgctatgtagcgagaatgctagtgaa
atcaatgggaggaaagaccctagtctgttgagttctatgctccagtcaag
gatgcagtcagattcaggaataggtgggttggacaggtaagctaggaagg
gggtatgt

gaattctcaaaaaaactgtaaatttaaagaatatataaacacaggtatat
acagggaacagtacatatattgccatgcatgcacacttagcatactcacg
tgaacacacagcatgcacacacacagcatacacatgtacacacatagcac
acacatatacaagcacacatactcactagaaggcacaaacatattctcct
gtgttttgacgtaacatgttcacagaatatgtacattaataaatagctat
atgctcttaaatacgtgcatgtggccatacctcaggggcagtcataactg
agattccagaaacagatctgtacctttatggttaatgaatgcagtgaagg
aaaagaaattttatttatttatttatttatttatttatttatatttagct
ttcgatgaggaaaaattaaacttctttattttaaatcccattgtgcttct
aattaaattatcctgcttatatcaaaagttaatgaaagacaagcatatat
catttcaccaacttctattcttgctaaaaaaaaagaaaaaattgaacaca
taaaaatgtctacaatgaagaaacaaacacaaatacccagtgttgccagt
gggcagttatttatttactgatatttgaaagacagcacttaaggcacaga
gagatcaaaacaaaactgctttcagattaagaaattaaaatacaaaaaaa
aaatgtctttaggtcttgaggtatgcagcagagctcggtggcacaggctt
cagatccaaaaccatcatcacaaagtccctgcagttacttcatccacacg
ggctccaaattacacttcaactgttgctgtttttaagttatcattttaag
aaccctgctagaacaattacttaaccctgtagtacctcactcaaaagaga
agcaaatccccatttgcttctatattgagtttgaaacagtgtggtttgtt
ttgttgtttgttgtttatttgttgttgatgatgttgtctactgcaatttg
gttatgctatgactgatcttaaagcatgccatgtcaatgatcagaagaat
agaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40200913_40201987
seq2: B6Ng01-118J05.g_66_1121

seq1  GAATTCTCAAAAAAACTGTAAATTTAAAGAATATATAAACACAGGTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAAAAAACTGTAAATTTAAAGAATATATAAACACAGGTATAT  50

seq1  ACAGGGAACAGTACATATATTGCCATGCATGCACACTTAGCATACTCACG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAACAGTACATATATTGCCATGCATGCACACTTAGCATACTCACG  100

seq1  TGAACACACAGCATGCACACACACAGCATACACATGTACACACATAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACACAGCATGCACACACACAGCATACACATGTACACACATAGCAC  150

seq1  ACACATATACAAGCACACATACTCACTAGAAGGCACAAACATATTCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATACAAGCACACATACTCACTAGAAGGCACAAACATATTCTCCT  200

seq1  GTGTTTTGACGTAACATGTTCACAGAATATGTACATTAATAAATAGCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGACGTAACATGTTCACAGAATATGTACATTAATAAATAGCTAT  250

seq1  ATGCTCTTAAATACGTGCATGTGGCCATACCTCAGGGGCAGTCATAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTAAATACGTGCATGTGGCCATACCTCAGGGGCAGTCATAACTG  300

seq1  AGATTCCAGAAACAGATCTGTACCTTTATGGTTAATGAATGCAGTGAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCAGAAACAGATCTGTACCTTTATGGTTAATGAATGCAGTGAAGG  350

seq1  AAAAGAAATTTTATTTATTTATTTATTTATTTATTTATTTATATTTAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAATTTTATTTATTTATTTATTTATTTATTTATTTATATTTAGCT  400

seq1  TTCGATGAGGAAAAATTAAACTTCTTTATTTTAAATCCCATTGTGCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATGAGGAAAAATTAAACTTCTTTATTTTAAATCCCATTGTGCTTCT  450

seq1  AATTAAATTATCCTGCTTATATCAAAAGTTAATGAAAGACAAGCATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTATCCTGCTTATATCAAAAGTTAATGAAAGACAAGCATATAT  500

seq1  CATTTCACCAACTTCTATTCTTGCTAAAAAAAAAGAAAAAATTGAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCACCAACTTCTATTCTTGCTAAAAAAAAAGAAAAAATTGAACACA  550

seq1  TAAAAATGTCTACAATGAAGAAACAAACACAAATACCCAGTGTTGCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATGTCTACAATGAAGAAACAAACACAAATACCCAGTGTTGCCAGT  600

seq1  GGGCAGTTATTTATTTACTGATATTTGAAAGACAGCACTTAAGGCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGTTATTTATTTACTGATATTTGAAAGACAGCACTTAAGGCACAGA  650

seq1  GAGATCAAAACAAAACTGCTTTCAGATTAAGAAATTAAAATACAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAAAACAAAACTGCTTTCAGATTAAGAAATTAAAATACAAAAAAA  700

seq1  AAATGTCTTTAGGTCTTGAGGTATGCAGCAGAGCTCGGTGGCACAGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCTTTAGGTCTTGAGGTATGCAGCAGAGCTCGGTGGCACAGGCTT  750

seq1  CAGATCCAAAACCATCATCACAAAGTCCCTGCAGTTACTTCATCCACACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCAAAACCATCATCACAAAGTCCCTGCAGTTACTTCATCCACACG  800

seq1  GGCTCCAAATTACACTTCAACTGTTGCTGTTTTTAAGTTATCATTTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCAAATTACACTTCAACTGTTGCTGTTTTTAAGTTATCATTTTAAG  850

seq1  AACCCTGCTAGAACAATTACTTAACCCTGTAGTACCTCACTCAAAAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGCTAGAACAATTACTTAACCCTGTAGTACCTCACTCAAAAGAGA  900

seq1  AGCAAATCCCCATTTGCTTCTATATTGAGTTTGAAAACAAGTGTGGTTTG  950
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  AGCAAATCCCCATTTGCTTCTATATTGAGTTTGAAA--CAGTGTGGTTTG  948

seq1  TTTTGTTTGTTTGTTTGTTTATTTGTTTGTTTGATTGATTGTTTGTTCTT  1000
      ||||| ||||||| |||||||||||||   |||| ||||   ||||   |
seq2  TTTTG-TTGTTTG-TTGTTTATTTGTT--GTTGA-TGAT--GTTGT--CT  989

seq1  ACTGCAAATTTGGGTTTATGCTATGACTGATCTCTAAAGCATTGCCAATG  1050
      ||||| |||||||  |||||||||||||||||| ||||||| |||| |||
seq2  ACTGC-AATTTGG--TTATGCTATGACTGATCT-TAAAGCA-TGCC-ATG  1033

seq1  TCCAATGATCAGAAAGAATAGAAAT  1075
      | |||||||||| ||||||||||||
seq2  T-CAATGATCAG-AAGAATAGAAAT  1056


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