BAC Information

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BAC

Clone NameB6Ng01-118M04
Chromosome3 (Build37)
Map Location 13,164,045 - 13,165,217
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118M04.bB6Ng01-118M04.g
ACCDH923155DH923156
length1,1381,142
definitionDH923155|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M04, 5' end.DH923156|Mus musculus domesticus DNA, BAC clone: B6Ng01-118M04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacagactgactgagaaacacttccaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaataaccctgagct
tctacctcacaccatcagaatggctaagataaaaaattcaggtgacagca
aatgcatgttaggatgtggagaaagaggaacactcgtccattgttggtgg
gattgctagcttgtacaaccactctggatatcaatctgtcagttcctcag
aaaattggatatagtactactggaagatcccgcaatacctctcctgggca
tatatccagaagattttcctactgtgaagaaggacacattctctgctatg
ttcatagctgtcttatttataatagccagaagctggaaagaacccagatg
tccctcaacagaggaatggatacagtaaatgtggtacatttacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tggatggacctggatggtatcatcctgagtgaggtaacacattcacaaag
gaactcatacaatatgtattcactgataagtggatattatcccagaaact
tagtatacccaagatacaagatacaatttgcaaaacacatgaagctcaag
aagaacaaagaccaaagtgtggacactttgcccttcttagaattgggaac
aaaacacccatggaaggagttacaaagacaaagtttggggctgagacaaa
agaatggatcatctagagactgccatacctggggatccatcccataatca
gcctccaaacactaaaggaccctgatataggtgtcttttgtgaggctatg
ctgaggcctggcaaacacagaagtggatgctcacagtcatctatagcatg
gaacagagggcccccaatggaggagcttgatatattacccatgagctcaa
ggggtctgcaaccttatagtggaatagcatattactaccagttccccaga
gctcatgtcttctattgcattttgtttcagaagatggcctagttggcatc
atgggatgagaggccccttggtctgcaaactttatatgtctcattatggg
gatgccaggtcaaaaattggaattgcgggtgaaagtgt
gaattcatatttaaatcaatgatattattttgtttgattaatgttcttta
gaaatttaataataataaaatctaaaattagagtaatattaaatatttcc
ttaaattatttagtagatgactgatataacatataaataatttgcaggta
tttctttgtgccaattatttttacaattaatgaaaatcaagatagtaact
agtagaaaattaagtgggaattagttatttaagatatatcattttgaaat
tattcatctattataaatacaccagtgacagtaaaaatttaagtacatgg
attcttaaatcagattcactagttttggcaaaatatttttgccttgtcag
ttatttaatcttgtttcttctctgcctattattatgtgtagagtagatta
gatatgccacccaattgctcatgttgcatgaggaataaacgaagtaactg
aactacactatgtaatagtattgtatttttacctacttgcttttacattt
gtctagtttttaggatttttttgtgtagttgatatattccagatgttatg
attaatactgcattatcatcagcttttttgcatatggacaccaaaagatg
agcatgatcattaacagactgtttaactttacctgtaacttccggtgggg
agtaatagttaagttgaattgtaattttcatctgttggtttcaaacttga
cattcatttttgccacactcaacttacttaaatggcagtatatataattg
aaaaagaaatccttacattatttcagtctcatggaaatttgggtgtgcta
ttaacatgtgagagtatcagtcattgggagagctggggtgaataatttat
ggttttggcactcaagtttttctctttggggatttttgttgtgttgttgt
gatattcgttcctcctttattttcaatgtccttacttttacatctactga
ctactgtattatttctcatttgtaacattttgttcattttccttctagaa
cattccaggtaaagaagagttggtttgagatgagtatacagctacaagag
aaaaaatatcaaggtgattaactaaagtaacccattcacaaactcaactc
atgttcctgctacagagtgcagagatagtgacagattgaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13164045_13165217
seq2: B6Ng01-118M04.g_67_1208 (reverse)

seq1  CCTTCAATCTGTGCTTCACCCTATTCCTGCACATCTGTAGGCAGGAAACA  50
      ||||||||||||      | ||||  |||||| |||||| ||||| ||||
seq2  CCTTCAATCTGT------CACTATCTCTGCAC-TCTGTA-GCAGG-AACA  41

seq1  TTTGAGGTTGGAAGTTTTGTGAGTGGGTTATTTTTAGTTTATATCAACTT  100
        ||| ||||  || ||||||| |||||||  |||||||   |||| |||
seq2  --TGA-GTTG--AG-TTTGTGAATGGGTTA-CTTTAGTT--AATCACCTT  82

seq1  GATATTTTTTTCTCTTTGTAGCTGTATACCTCATCCTCAAACCAACTCTT  150
      |||| ||||||||| ||||||||||||| ||||| |||||||||||||||
seq2  GATA-TTTTTTCTC-TTGTAGCTGTATA-CTCAT-CTCAAACCAACTCTT  128

seq1  CTTTTACCTTGGAATGTTCTAGAAGGAAAAATGAACAAAATGTTACAAAT  200
      | |||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  C-TTTACC-TGGAATGTTCTAGAAGG-AAAATGAACAAAATGTTACAAAT  175

seq1  GAGAAATAAATAACAGTAGTCAGTAGATGTAAAAGTAAGGAACATTGAAA  250
      |||||||||   |||||||||||||||||||||||||||| |||||||||
seq2  GAGAAATAA--TACAGTAGTCAGTAGATGTAAAAGTAAGG-ACATTGAAA  222

seq1  ATAAAGGAGGAAACGAATATCACAACAACAACAACAAAAATCCCCAAAGA  300
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  ATAAAGGAGG-AACGAATATCACAACAAC-ACAACAAAAATCCCCAAAGA  270

seq1  GAAAAACTTTGAGTGCCAAAACCATAAATTATTCACCCCAGCTCTCCCAA  350
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAC-TTGAGTGCCAAAACCATAAATTATTCACCCCAGCTCTCCCAA  319

seq1  TGACTGATACTCTCACATGTTAATAGCACACCCAAATTTCCATGAGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGATACTCTCACATGTTAATAGCACACCCAAATTTCCATGAGACTG  369

seq1  AAATAATGTAAGGATTTCTTTTTCAATTATATATACTGCCATTTAAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTAAGGATTTCTTTTTCAATTATATATACTGCCATTTAAGTAA  419

seq1  GTTGAGTGTGGCAAAAATGAATGTCAAGTTTGAAACCAACAGATGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTGTGGCAAAAATGAATGTCAAGTTTGAAACCAACAGATGAAAAT  469

seq1  TACAATTCAACTTAACTATTACTCCCCACCGGAAGTTACAGGTAAAGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTCAACTTAACTATTACTCCCCACCGGAAGTTACAGGTAAAGTTA  519

seq1  AACAGTCTGTTAATGATCATGCTCATCTTTTGGTGTCCATATGCAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTGTTAATGATCATGCTCATCTTTTGGTGTCCATATGCAAAAAA  569

seq1  GCTGATGATAATGCAGTATTAATCATAACATCTGGAATATATCAACTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGATAATGCAGTATTAATCATAACATCTGGAATATATCAACTACA  619

seq1  CAAAAAAATCCTAAAAACTAGACAAATGTAAAAGCAAGTAGGTAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAATCCTAAAAACTAGACAAATGTAAAAGCAAGTAGGTAAAAATA  669

seq1  CAATACTATTACATAGTGTAGTTCAGTTACTTCGTTTATTCCTCATGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACTATTACATAGTGTAGTTCAGTTACTTCGTTTATTCCTCATGCAA  719

seq1  CATGAGCAATTGGGTGGCATATCTAATCTACTCTACACATAATAATAGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCAATTGGGTGGCATATCTAATCTACTCTACACATAATAATAGGC  769

seq1  AGAGAAGAAACAAGATTAAATAACTGACAAGGCAAAAATATTTTGCCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGAAACAAGATTAAATAACTGACAAGGCAAAAATATTTTGCCAAA  819

seq1  ACTAGTGAATCTGATTTAAGAATCCATGTACTTAAATTTTTACTGTCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGAATCTGATTTAAGAATCCATGTACTTAAATTTTTACTGTCACT  869

seq1  GGTGTATTTATAATAGATGAATAATTTCAAAATGATATATCTTAAATAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATTTATAATAGATGAATAATTTCAAAATGATATATCTTAAATAAC  919

seq1  TAATTCCCACTTAATTTTCTACTAGTTACTATCTTGATTTTCATTAATTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCCCACTTAATTTTCTACTAGTTACTATCTTGATTTTCATTAATTG  969

seq1  TAAAAATAATTGGCACAAAGAAATACCTGCAAATTATTTATATGTTATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAATTGGCACAAAGAAATACCTGCAAATTATTTATATGTTATAT  1019

seq1  CAGTCATCTACTAAATAATTTAAGGAAATATTTAATATTACTCTAATTTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCTACTAAATAATTTAAGGAAATATTTAATATTACTCTAATTTT  1069

seq1  AGATTTTATTATTATTAAATTTCTAAAGAACATTAATCAAACAAAATAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTATTATTATTAAATTTCTAAAGAACATTAATCAAACAAAATAAT  1119

seq1  ATCATTGATTTAAATATGAATTC  1173
      |||||||||||||||||||||||
seq2  ATCATTGATTTAAATATGAATTC  1142