BAC Information

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BAC

Clone NameB6Ng01-119A06
Chromosome3 (Build37)
Map Location 95,990,254 - 96,147,533
singlet/doubletdoublet
Overlap geneSv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1
Upstream geneGabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4
Downstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119A06.bB6Ng01-119A06.g
ACCDH923337DH923338
length1,211217
definitionDH923337|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A06, 5' end.DH923338|Mus musculus domesticus DNA, BAC clone: B6Ng01-119A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,990,254 - 95,991,466)(96,147,317 - 96,147,533)
sequence
gaattcccaagtactggggcttgaaggataaagtataaaccttttattgg
agcctctttcccaaggaacaagagatcttctttgagggtatcaaactggg
agaaaaagctcgaacatcattagttggagcactcaggaggtagaggctgg
tgggtctgtgagtttgaagctggtccagtctacacagtgagctccagacc
agccagagcaacacagtgagacacagtctaaaacacgatgacaatgacat
cctcaaacaacctgggagaacagagaggatgcaggaggtatctaggcgtc
taggcaggtccatttcacttctgggtgagttagggatgagtgttctggag
gagtggtagaagacagagagaaagaaagagggttaagggggagggagagg
aagcagcaaaagtgaggggtgttttcctcaaatgtttgccttcttgcctt
tgagccttggtctgcagtggtgactgttcaccacctctccccacctccct
cctagatgttctcagatccattctgctacaggagtttcagcccctagagt
tggggctctaatacaaagttcatgggagaattgaggaatatccgctcatg
tctcctacccacccccctcccggggtttcctcctctccgcaggcctcatt
gtgtacctgggcatgatggtgggggccttcctctggggaggcctggctga
tcggctgggtcggagacagtgtctgctcatctcactctcagtcaacagcg
tcttcgccttctttctcgtccttcgtccagggttatggaacctttctctt
ctgccgcctcctttccggggtcgggtgagtgtccacattctaaaccctta
aagaaagaactgtgccctgggtcactgccgtagtgtacccttggcacagt
gtgaggcatgttgggcacaacttaaatctgtgtgaaatgagtgaacgaat
gcctttcccacttcctaccccatcttcaggcagatacccatgtccagtgc
ttcgcctgctaacatccagaaatacatgctgggtctggtccgagtcccca
gcttaactctggtttctgaggcttgttaacactgaggtctactggaaccc
cggcttggccctgggcctatgcatatctggagttatttccctctcaagaa
aagtaaatttttccttagatttgtttaaaaggcttgctgaatccttgcta
atctgaagttt
cgctgccacacatgagaaccccacgctgaccaggctacggcccgggtgac
caacaggacccagagaaggagcccatgtgcgctttaggatccgggtttag
cggtagtgggttaatccgctctaattgcccggtggcggcagcgcgagttc
ctcgctagacgccaccaaataaaggacgctgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95990254_95991466
seq2: B6Ng01-119A06.b_46_1256

seq1  GAATTCCCAAGTACTGGGGCTTGAAGGATAAAGTATAAACCTTTTATTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGTACTGGGGCTTGAAGGATAAAGTATAAACCTTTTATTGG  50

seq1  AGCCTCTTTCCCAAGGAACAAGAGATCTTCTTTGAGGGTATCAAACTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTTCCCAAGGAACAAGAGATCTTCTTTGAGGGTATCAAACTGGG  100

seq1  AGAAAAAGCTCGAACATCATTAGTTGGAGCACTCAGGAGGTAGAGGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGCTCGAACATCATTAGTTGGAGCACTCAGGAGGTAGAGGCTGG  150

seq1  TGGGTCTGTGAGTTTGAAGCTGGTCCAGTCTACACAGTGAGCTCCAGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGTGAGTTTGAAGCTGGTCCAGTCTACACAGTGAGCTCCAGACC  200

seq1  AGCCAGAGCAACACAGTGAGACACAGTCTAAAACACGATGACAATGACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGCAACACAGTGAGACACAGTCTAAAACACGATGACAATGACAT  250

seq1  CCTCAAACAACCTGGGAGAACAGAGAGGATGCAGGAGGTATCTAGGCGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACAACCTGGGAGAACAGAGAGGATGCAGGAGGTATCTAGGCGTC  300

seq1  TAGGCAGGTCCATTTCACTTCTGGGTGAGTTAGGGATGAGTGTTCTGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAGGTCCATTTCACTTCTGGGTGAGTTAGGGATGAGTGTTCTGGAG  350

seq1  GAGTGGTAGAAGACAGAGAGAAAGAAAGAGGGTTAAGGGGGAGGGAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGTAGAAGACAGAGAGAAAGAAAGAGGGTTAAGGGGGAGGGAGAGG  400

seq1  AAGCAGCAAAAGTGAGGGGTGTTTTCCTCAAATGTTTGCCTTCTTGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCAAAAGTGAGGGGTGTTTTCCTCAAATGTTTGCCTTCTTGCCTT  450

seq1  TGAGCCTTGGTCTGCAGTGGTGACTGTTCACCACCTCTCCCCACCTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCTTGGTCTGCAGTGGTGACTGTTCACCACCTCTCCCCACCTCCCT  500

seq1  CCTAGATGTTCTCAGATCCATTCTGCTACAGGAGTTTCAGCCCCTAGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATGTTCTCAGATCCATTCTGCTACAGGAGTTTCAGCCCCTAGAGT  550

seq1  TGGGGCTCTAATACAAAGTTCATGGGAGAATTGAGGAATATCCGCTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCTAATACAAAGTTCATGGGAGAATTGAGGAATATCCGCTCATG  600

seq1  TCTCCTACCCACCCCCCTCCCGGGGTTTCCTCCTCTCCGCAGGCCTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTACCCACCCCCCTCCCGGGGTTTCCTCCTCTCCGCAGGCCTCATT  650

seq1  GTGTACCTGGGCATGATGGTGGGGGCCTTCCTCTGGGGAGGCCTGGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACCTGGGCATGATGGTGGGGGCCTTCCTCTGGGGAGGCCTGGCTGA  700

seq1  TCGGCTGGGTCGGAGACAGTGTCTGCTCATCTCACTCTCAGTCAACAGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCTGGGTCGGAGACAGTGTCTGCTCATCTCACTCTCAGTCAACAGCG  750

seq1  TCTTCGCCTTC-TTCTCGTCCTTCGTCCAGGGTTATGGAACCTTTCTCTT  799
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGCCTTCTTTCTCGTCCTTCGTCCAGGGTTATGGAACCTTTCTCTT  800

seq1  CTGCCGCCTCCTTTCCGGGGTCGGGTGAGTGTCCACATTCTAAACCCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGCCTCCTTTCCGGGGTCGGGTGAGTGTCCACATTCTAAACCCTTA  850

seq1  AAGAAAGAACTGTGCCCT-GGTCACTGCCGTAGTGTACCCTTGGCACAGT  898
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAGAAAGAACTGTGCCCTGGGTCACTGCCGTAGTGTACCCTTGGCACAGT  900

seq1  GTGAGGCATGTTGGGCACAACTTAAATCTGTGTGAAATGAGTGAACGAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCATGTTGGGCACAACTTAAATCTGTGTGAAATGAGTGAACGAAT  950

seq1  GCCTTTCCCACTTCCTACCCCATCTTCAGGCCAGATACCCATGTCCAGTG  998
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GCCTTTCCCACTTCCTACCCCATCTTCAGG-CAGATACCCATGTCCAGTG  999

seq1  C-TCGCCTGCTAACATCCAGAATACCATGCGGGGTCTGTCCCCGAGTCCC  1047
      | ||||||||||||||||||||   ||||| |||||||   |||||| ||
seq2  CTTCGCCTGCTAACATCCAGAAATACATGCTGGGTCTG-GTCCGAGT-CC  1047

seq1  CCAGCTTACCTCT-GTTTCTGAGGC-TGTCTACACTGAGGTCTACTGGAC  1095
      |||||||| |||| ||||||||||| |||  |||||||||||||||||| 
seq2  CCAGCTTAACTCTGGTTTCTGAGGCTTGTTAACACTGAGGTCTACTGGAA  1097

seq1  CTCAGCCTTGCCCCTGGGCTCATGCATATCCTGGAGTTA-TCCCCTCCCA  1144
      | | | |||| ||||||||  |||||||| ||||||||| | ||||| ||
seq2  CCCCGGCTTGGCCCTGGGCCTATGCATAT-CTGGAGTTATTTCCCTCTCA  1146

seq1  --GAAAGTATATTTTTTCCTGAG-TTTGTTAAGAAGGCTTGCTGACACCC  1191
         |||||| | |||||||| || |||||| | ||||||||||||  || 
seq2  AGAAAAGTA-AATTTTTCCTTAGATTTGTTTAAAAGGCTTGCTGAATCCT  1195

seq1  TCCTTGGCAGAATCTGAAGTTT  1213
      | ||      ||||||||||||
seq2  TGCT------AATCTGAAGTTT  1211

seq1: chr3_96147317_96147533
seq2: B6Ng01-119A06.g_71_287 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACAGCGTCCTTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACAGCGTCCTTTATT  50

seq1  TGGTGGCGTCTAGCGAGGAACTCGCGCTGCCGCCACCGGGCAATTAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCGTCTAGCGAGGAACTCGCGCTGCCGCCACCGGGCAATTAGAGC  100

seq1  GGATTAACCCACTACCGCTAAACCCGGATCCTAAAGCGCACATGGGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAACCCACTACCGCTAAACCCGGATCCTAAAGCGCACATGGGCTCC  150

seq1  TTCTCTGGGTCCTGTTGGTCACCCGGGCCGTAGCCTGGTCAGCGTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGGTCCTGTTGGTCACCCGGGCCGTAGCCTGGTCAGCGTGGGGT  200

seq1  TCTCATGTGTGGCAGCG  217
      |||||||||||||||||
seq2  TCTCATGTGTGGCAGCG  217