BAC Information

Click to search

BAC

Clone NameB6Ng01-119C04
Chromosome3 (Build37)
Map Location 117,195,804 - 117,307,343
singlet/doubletdoublet
Overlap gene4833424O15Rik
Upstream geneRtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneEG668759, Snx7, LOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119C04.bB6Ng01-119C04.g
ACCDH923429DH923430
length1,1521,048
definitionDH923429|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C04, 5' end.DH923430|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,306,183 - 117,307,343)(117,195,804 - 117,196,868)
sequence
gaattctcataacatcaggaaaatgattaagaggaggagcaagaattgag
aaggagcagcctagtaggtggggtggaaatagaatttaccatgcaaatta
ctatattgttgaatgtgagatataaagcttagcaatattgaaaccaagat
cttaggactgtggctaccacaaggcacaaagtagaatatagtctctggga
agaagacacgaaaagtgtccttaaggagatagctagttcatttcgattgc
catatagacttaactatggggccgagtatgaaatgagcgaattagaattc
tcctgagacactggaacttaattctcatcacagtgaaaggccatgagtgc
ctgtgaaggggcatatggggctcagattcctgcttcagacacatgcacat
ggaggaaaggaggggagtgaaacgcaaaaatctcagttagtagctcctgc
agtaattctctccttgtaataagccagctgcagaaaagcaaggcaacgtg
acagatggtgatgggaaaagacaagaggggtgtgagtgagttttgagatg
taacttatatttgaggagtgctaaataatataggaacaaagacccaagga
aggaatatcagtgcagtgggaaacaatggaagcagtgggcagactttcaa
gaggaggggccatggccaaccccattcagtattgcaagaaaatggcagca
gtaagcatccaagcattcaagaactcaagcattccaggttgttatttgtt
aacctgactgatgtggtgagagcagaaagcttttcacactgcctctgcaa
ctcaaggaagccttgctcggtgaaccaatgaagtaattctctgaaccaaa
tagaatgaccttaaaggacctggcaatggatttcacttgactgatggaag
caattaggtaaggagtaggaggaaaagaacctgaaatggattgcaggggt
tcttcctacgtcagtcttagcttgcccctgcctcatagactcttcaaaag
atgatgaaaaaaatgcattcatttctccattgtcaactgtgctctttctg
atcctcctatgactctttcctcaggaaaggagatttgcatatcccttacc
agctgtgacattcagttcagtcctctgagttcgggtgaatacctctggct
aa
gaattcctgatctctccaatactttttacatgaaggagtgttgtattttg
tcaaacgctttaggcttgcgtgcagctgccttcacctgtctcatttacac
ttttaaggaaacttatgatcccattggtctcatctcagccatttagggca
atctgtctgctgtaaggtcagtttgagggtaaattttacttcttcttcag
tcttcgtatttcttgccacttaaagcaccacattcacagattcaaggcct
taggacacaagcagtatgtgtgaaaagttcattgttttgatcaccatgga
acgcctagaaaatatgccttgaatctcttattgcacaggagtatctaatt
aatgggtttgctgaatatggaattctaggttgataattccactcacaacc
tgtaatatataactttattctcttatagccagcacactattctttaattc
agattatattctgagtctcatgaaaatttaaagaatttcttagaactgat
gacataaaattttacaaccatatacctctctatttagatatattttattc
actgtttggggctctgaaacagggcattcaattctggagaccatattctt
tactactgagggtgtatactaactattcaaattatttttaagattttttt
ctgttttctctatctggaatttaaggtttgatggttagagaccttccata
tgacaacacatatgtggagaaatgcgctctctcactttttatttacaagc
acacagaaaaatgtattcaacattatacatatattaatgtatttatactt
tatttattatgattgacatattctggaagagcccctctgttgtgctaact
tcctgactgaatttttaaaatagctatagctaggcatggtggtgaatgct
ttaagtagatcacttggagcaaggttaggatgatttatgtggttcagcca
cctggtctacatatgagctgcagcagccagtgatatagtgagaaactgtg
tgcagaaaataaatatattgttatacatataaaatttatacaattact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117306183_117307343
seq2: B6Ng01-119C04.b_44_1195 (reverse)

seq1  TTAGCCAGA-GTATTCACCCCGAACTCAGA-GACTGGAAACTGAATGTCA  48
      ||||||||| ||||||| |||||||||||| |||||  ||||||||||||
seq2  TTAGCCAGAGGTATTCA-CCCGAACTCAGAGGACTG--AACTGAATGTCA  47

seq1  CAGCTGGTAGGGAATATGCAAATCTCCCTTTCCTGAGGAAAGAGTCATAG  98
      ||||||||| || |||||||||||| ||||||||||||||||||||||||
seq2  CAGCTGGTAAGGGATATGCAAATCT-CCTTTCCTGAGGAAAGAGTCATAG  96

seq1  GAGATTCAGGAAAGAGCACAGTTTGACAATGGAGAAATGAATGCATTTTT  148
      |||  ||| |||||||||||| ||||||||||||||||||||||||||||
seq2  GAGGATCA-GAAAGAGCACAG-TTGACAATGGAGAAATGAATGCATTTTT  144

seq1  TTCCTTCATCTTTTTGAAGAGTCTATGAGGCAGGGGGCAAAGCTAAGACT  198
      || | ||||| |||||||||||||||||||||||||   |||||||||||
seq2  TT-CATCATC-TTTTGAAGAGTCTATGAGGCAGGGG--CAAGCTAAGACT  190

seq1  GACGTAGGAAGAACCCCCTGCAATCCATTTCAGGTTCTTTTCCTCCTACT  248
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GACGTAGGAAGAA-CCCCTGCAATCCATTTCAGGTTCTTTTCCTCCTACT  239

seq1  CCTTACCTAATTGCTTCCATCAGTCAAGTGAAATCCATTGCCAGGTCCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCTAATTGCTTCCATCAGTCAAGTGAAATCCATTGCCAGGTCCTT  289

seq1  TAAGGTCATTCTATTTGGTTCAGAGAATTACTTCATTGGTTCACCGAGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCATTCTATTTGGTTCAGAGAATTACTTCATTGGTTCACCGAGCA  339

seq1  AGGCTTCCTTGAGTTGCAGAGGCAGTGTGAAAAGCTTTCTGCTCTCACCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCCTTGAGTTGCAGAGGCAGTGTGAAAAGCTTTCTGCTCTCACCA  389

seq1  CATCAGTCAGGTTAACAAATAACAACCTGGAATGCTTGAGTTCTTGAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCAGGTTAACAAATAACAACCTGGAATGCTTGAGTTCTTGAATG  439

seq1  CTTGGATGCTTACTGCTGCCATTTTCTTGCAATACTGAATGGGGTTGGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATGCTTACTGCTGCCATTTTCTTGCAATACTGAATGGGGTTGGCC  489

seq1  ATGGCCCCTCCTCTTGAAAGTCTGCCCACTGCTTCCATTGTTTCCCACTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCCCTCCTCTTGAAAGTCTGCCCACTGCTTCCATTGTTTCCCACTG  539

seq1  CACTGATATTCCTTCCTTGGGTCTTTGTTCCTATATTATTTAGCACTCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATATTCCTTCCTTGGGTCTTTGTTCCTATATTATTTAGCACTCCT  589

seq1  CAAATATAAGTTACATCTCAAAACTCACTCACACCCCTCTTGTCTTTTCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATAAGTTACATCTCAAAACTCACTCACACCCCTCTTGTCTTTTCC  639

seq1  CATCACCATCTGTCACGTTGCCTTGCTTTTCTGCAGCTGGCTTATTACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCATCTGTCACGTTGCCTTGCTTTTCTGCAGCTGGCTTATTACAA  689

seq1  GGAGAGAATTACTGCAGGAGCTACTAACTGAGATTTTTGCGTTTCACTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAATTACTGCAGGAGCTACTAACTGAGATTTTTGCGTTTCACTCC  739

seq1  CCTCCTTTCCTCCATGTGCATGTGTCTGAAGCAGGAATCTGAGCCCCATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTCCTCCATGTGCATGTGTCTGAAGCAGGAATCTGAGCCCCATA  789

seq1  TGCCCCTTCACAGGCACTCATGGCCTTTCACTGTGATGAGAATTAAGTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTCACAGGCACTCATGGCCTTTCACTGTGATGAGAATTAAGTTC  839

seq1  CAGTGTCTCAGGAGAATTCTAATTCGCTCATTTCATACTCGGCCCCATAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCTCAGGAGAATTCTAATTCGCTCATTTCATACTCGGCCCCATAG  889

seq1  TTAAGTCTATATGGCAATCGAAATGAACTAGCTATCTCCTTAAGGACACT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTATATGGCAATCGAAATGAACTAGCTATCTCCTTAAGGACACT  939

seq1  TTTCGTGTCTTCTTCCCAGAGACTATATTCTACTTTGTGCCTTGTGGTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGTGTCTTCTTCCCAGAGACTATATTCTACTTTGTGCCTTGTGGTAG  989

seq1  CCACAGTCCTAAGATCTTGGTTTCAATATTGCTAAGCTTTATATCTCACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTCCTAAGATCTTGGTTTCAATATTGCTAAGCTTTATATCTCACA  1039

seq1  TTCAACAATATAGTAATTTGCATGGTAAATTCTATTTCCACCCCACCTAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACAATATAGTAATTTGCATGGTAAATTCTATTTCCACCCCACCTAC  1089

seq1  TAGGCTGCTCCTTCTCAATTCTTGCTCCTCCTCTTAATCATTTTCCTGAT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGCTCCTTCTCAATTCTTGCTCCTCCTCTTAATCATTTTCCTGAT  1139

seq1  GTTATGAGAATTC  1161
      |||||||||||||
seq2  GTTATGAGAATTC  1152

seq1: chr3_117195804_117196868
seq2: B6Ng01-119C04.g_66_1113

seq1  GAATTCCTGATCTCTCCAATACTTTTTACATGAAGGAGTGTTGTATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTCTCCAATACTTTTTACATGAAGGAGTGTTGTATTTTG  50

seq1  TCAAACGCTTTAGGCTTGCGTGCAGCTGCCTTCACCTGTCTCATTTACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACGCTTTAGGCTTGCGTGCAGCTGCCTTCACCTGTCTCATTTACAC  100

seq1  TTTTAAGGAAACTTATGATCCCATTGGTCTCATCTCAGCCATTTAGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGGAAACTTATGATCCCATTGGTCTCATCTCAGCCATTTAGGGCA  150

seq1  ATCTGTCTGCTGTAAGGTCAGTTTGAGGGTAAATTTTACTTCTTCTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTGCTGTAAGGTCAGTTTGAGGGTAAATTTTACTTCTTCTTCAG  200

seq1  TCTTCGTATTTCTTGCCACTTAAAGCACCACATTCACAGATTCAAGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGTATTTCTTGCCACTTAAAGCACCACATTCACAGATTCAAGGCCT  250

seq1  TAGGACACAAGCAGTATGTGTGAAAAGTTCATTGTTTTGATCACCATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACACAAGCAGTATGTGTGAAAAGTTCATTGTTTTGATCACCATGGA  300

seq1  ACGCCTAGAAAATATGCCTTGAATCTCTTATTGCACAGGAGTATCTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTAGAAAATATGCCTTGAATCTCTTATTGCACAGGAGTATCTAATT  350

seq1  AATGGGTTTGCTGAATATGGAATTCTAGGTTGATAATTCCACTCACAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTTTGCTGAATATGGAATTCTAGGTTGATAATTCCACTCACAACC  400

seq1  TGTAATATATAACTTTATTCTCTTATAGCCAGCACACTATTCTTTAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATATAACTTTATTCTCTTATAGCCAGCACACTATTCTTTAATTC  450

seq1  AGATTATATTCTGAGTCTCATGAAAATTTAAAGAATTTCTTAGAACTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATATTCTGAGTCTCATGAAAATTTAAAGAATTTCTTAGAACTGAT  500

seq1  GACATAAAATTTTACAACCATATACCTCTCTATTTAGATATATTTTATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATAAAATTTTACAACCATATACCTCTCTATTTAGATATATTTTATTC  550

seq1  ACTGTTTGGGGCTCTGAAACAGGGCATTCAATTCTGGAGACCATATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGGGGCTCTGAAACAGGGCATTCAATTCTGGAGACCATATTCTT  600

seq1  TACTACTGAGGGTGTATACTAACTATTCAAATTATTTTTAAGATTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGAGGGTGTATACTAACTATTCAAATTATTTTTAAGATTTTTTT  650

seq1  CTGTTTTCTCTATCTGGAATTTAAGGTTTGATGGTTAGAGACCTTCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTCTCTATCTGGAATTTAAGGTTTGATGGTTAGAGACCTTCCATA  700

seq1  TGACAACACATATGTGGAGAAATGCGCTCTCTCACTTTTTATTTACAAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACACATATGTGGAGAAATGCGCTCTCTCACTTTTTATTTACAAGC  750

seq1  ACACAGAAAAATGTATTCAACATTATACATATATTAATGTATTTATACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAAAATGTATTCAACATTATACATATATTAATGTATTTATACTT  800

seq1  TATTTATTATGATTGACATATTCTGGAAGAGCCCCTCTGTTGTGCTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTATGATTGACATATTCTGGAAGAGCCCCTCTGTTGTGCTAACT  850

seq1  TCCTGACTGAATTTTTAAAAATAGCTATAGCTAGGCATGGTGGTGAATGC  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTGACTGAATTTTT-AAAATAGCTATAGCTAGGCATGGTGGTGAATGC  899

seq1  TTTTAAGTAGATCACTTGGGAAGCAAGGTTAGGATGATTTATGTGGTTCA  950
       ||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  -TTTAAGTAGATCACTTGG--AGCAAGGTTAGGATGATTTATGTGGTTCA  946

seq1  AGGCCACCCTGGTCTACATATTGAGCTGCAGGCCAGCCAGGGTGATATAG  1000
        |||| ||||||||||||| ||||||||||  ||||||  |||||||||
seq2  --GCCA-CCTGGTCTACATA-TGAGCTGCAG--CAGCCA--GTGATATAG  988

seq1  TGAGACACTGTGTGCAGGAAAAATAAATATATGTATATTACATATAAAAA  1050
      ||||| |||||||||||  ||||||||||||| | |  ||||||| ||||
seq2  TGAGAAACTGTGTGCAG--AAAATAAATATAT-TGTTATACATAT-AAAA  1034

seq1  TATATACATATTACT  1065
      | |||||| ||||||
seq2  TTTATACA-ATTACT  1048