BAC Information

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BAC

Clone NameB6Ng01-119C11
Chromosome3 (Build37)7 (Build37)
Map Location 41,059,065 - 41,059,737119,452,957 - 119,454,094
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119C11.bB6Ng01-119C11.g
ACCDH923443DH923444
length1,0621,128
definitionDH923443|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C11, 5' end.DH923444|Mus musculus domesticus DNA, BAC clone: B6Ng01-119C11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,065 - 41,059,737)(119,452,957 - 119,454,094)
sequence
gaattctttgtttagctatgtaccccatttttaatagggttatttgattt
tctggagtccagcttcttgagttctttatatatatatattagatattagt
cccctatatgagttaggataggtaaagatcctttcccaatctgttggtgg
tctttttgtcttattgacggtgtcttttgccttgcagaagctttgtaatt
ttatgaggtcccaattgtcgattctcaatcttacagcacaagccattgct
gttctgtttaggaacttttcccctgtgcccatatctttgaggcttttctc
cactttctcctctataagtttcagtgtctctgattttatgtggagttcct
tgatccacttagacttgagctttgtacaaggagataaaaatggatcaatt
cgcattcttctacctaataaccaccagttgtgccagcaccatttgttgaa
aatgctgtcttttttccacggatgggtttagctcccttgtcaaggatcaa
gtgaccataggtatatgggttcatttctgggtcttcaattctattccatt
gatctacctgtctgtcatggtgattccaccagaggttcttttattgttga
gaatagtttttactatgcaacaagtattcttaatgactaagttatctctc
cagccccatctagaccctgtcttaaaaaaaaagtaactaaaaaaatttta
aaaaaaatttcaaaaggaacaacaacaacaacagcaactcatgatgggat
ttcagtgtaactccttttaagacagagatgggagatgaacacaactcatc
cctgatccgtttatttcttcagaatgtattatttgggctggtgtggtgat
gcacacctgatgattaagaatggtcctagcacttgcagacaggaggatga
gaacacgttcaaggtcaccctcagctacacagcctcagttacacagcaag
ctccaggctaacctggtctacctgagaccctgtctcgaaacaacaaaaga
tttaaattcctaaatcctaactttgtatggttgggtcagaacgtttttgc
aatatccattaa
gaattccttcctgcagaccacgccctgtctgactttgagtttgatgtcat
catcggtgctgacggtcacaggaacacgctagaaggtaaggactcttggc
gatagggctgagagataacaaggggaatcagagaaggaagatgaaggtgg
cagccattccactttccctcttgctggatcttagtatccccaagtgagaa
tatgggtagcagaaccctttcagagcaccaagatgagggatgggggaggg
cttatctgtgaaaatgctttctaaagggggaatactgtgggaaaagtcaa
cacaaactcactgaactaccgtgttagccaaagtgcaccctgacttcatc
taaggcaaacatctcaagactttaatagcatccattcatgttcaaggact
ccacaaaccaacagagaaaccctctttcttcataactcttaagcacgccc
actgctgggcagctaggcaaagtgccaggattcaaagccatgcttctcta
agtccagcaggcaggcaggcaggcttcgtgcgctcattcacactgaaact
gttgtctgggaccaggtgtgataaaccatgtgccaccagtagagtctttc
agagtagggagagttgcgatttctgagtttgcttctttcaagggtcacag
gttgcagacagattgctgggaaaattcattctctgaggacagcatgcaca
tgctgacctcagcaagttctgaatgtgtgggcctccagctcaggcctccc
ctgtcagcaagactctgccctgtctctactcgccccgccttcatacccac
acccatcttctttcagcaatatctgacaagacactccgaagctgctaaca
tgaatacttgtatggtttatgggattgttctagtggcttggaaaaatatg
agtctggatatttgaaagcccagggtttatgcttcagcctgctatcagtt
ggatctctcagaccaatcagtaatcaagaaaatgccacacacatgcacct
ttaagccagtctgatggggctactcatcagtgagatgcctaggtttgtgt
cagaacaaagccagacagcaacatactagtacagccactaggaacagggt
tatgcgctgttttttattgtattttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059065_41059737
seq2: B6Ng01-119C11.b_47_661 (reverse)

seq1  ATAGCAAAAACTCTTCTCAAGGATAACAGAACCTCTGGTGGAATCACCAT  50
      |||| ||||||| |||||||  |||| |||||||||||||||||||||| 
seq2  ATAGTAAAAACTATTCTCAACAATAAAAGAACCTCTGGTGGAATCACCA-  49

seq1  GCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGT  100
                                                        
seq2  --------------------------------------------------  49

seq1  ACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCA  150
                ||||||||| | ||| ||||||||||||||||||||| ||
seq2  ----------TGACAGACAGGTAGATCAATGGAATAGAATTGAAGACCCA  89

seq1  GAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAA  200
      |||| ||| ||| | |||||||||||||||||| | ||||||||||||||
seq2  GAAATGAACCCATATACCTATGGTCACTTGATCCTTGACAAGGGAGCTAA  139

seq1  AACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACA  250
      | |||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCC-GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACA  188

seq1  ACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCT  300
      |||||| ||||| | ||||||||||||||||||||||| |  ||||||||
seq2  ACTGGTGGTTATTAGGTAGAAGAATGCGAATTGATCCATTTTTATCTCCT  238

seq1  TGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGA  350
      ||||| ||| |||| ||||||||||||||||||| |||||||||| ||||
seq2  TGTACAAAGCTCAAGTCTAAGTGGATCAAGGAACTCCACATAAAATCAGA  288

seq1  GACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGG  400
      ||||||||||||||||||||||||||||| |||||||||  |||||||||
seq2  GACACTGAAACTTATAGAGGAGAAAGTGGAGAAAAGCCTCAAAGATATGG  338

seq1  TCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGA  450
       |||||||||||| |||||  | |||||||||||||||||||||||||||
seq2  GCACAGGGGAAAAGTTCCTAAACAGAACAGCAATGGCTTGTGCTGTAAGA  388

seq1  TTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGC  500
      |||||||| ||||| ||||||||||| ||| | |||||||||||||||||
seq2  TTGAGAATCGACAATTGGGACCTCATAAAATTACAAAGCTTCTGCAAGGC  438

seq1  AAAAGACACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGA  549
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  AAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGA  488

seq1  TCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCA----ATATATA  595
      |||||||||||||||| ||| |||||||||||||||| |    |||||||
seq2  TCTTTACCTATCCTAACTCATATAGGGGACTAATATCTAATATATATATA  538

seq1  TCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAA  645
      | |||||||||||||| |||| |||||||||||||||||||| ||| |||
seq2  TAAAGAACTCAAGAAGCTGGACTCCAGAAAATCAAATAACCCTATT-AAA  587

seq1  AATGGGGCTCAGAGCTAAACAAAGAATT  673
      |||||||  || ||||||||||||||||
seq2  AATGGGGTACATAGCTAAACAAAGAATT  615

seq1: chr7_119452957_119454094
seq2: B6Ng01-119C11.g_67_1194

seq1  GAATTCCTTCCTGCAGACCACGCCCTGTCTGACTTTGAGTTTGATGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCTGCAGACCACGCCCTGTCTGACTTTGAGTTTGATGTCAT  50

seq1  CATCGGTGCTGACGGTCACAGGAACACGCTAGAAGGTAAGGACTCTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGTGCTGACGGTCACAGGAACACGCTAGAAGGTAAGGACTCTTGGC  100

seq1  GATAGGGCTGAGAGATAACAAGGGGAATCAGAGAAGGAAGATGAAGGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGCTGAGAGATAACAAGGGGAATCAGAGAAGGAAGATGAAGGTGG  150

seq1  CAGCCATTCCACTTTCCCTCTTGCTGGATCTTAGTATCCCCAAGTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATTCCACTTTCCCTCTTGCTGGATCTTAGTATCCCCAAGTGAGAA  200

seq1  TATGGGTAGCAGAACCCTTTCAGAGCACCAAGATGAGGGATGGGGGAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGTAGCAGAACCCTTTCAGAGCACCAAGATGAGGGATGGGGGAGGG  250

seq1  CTTATCTGTGAAAATGCTTTCTAAAGGGGGAATACTGTGGGAAAAGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTGTGAAAATGCTTTCTAAAGGGGGAATACTGTGGGAAAAGTCAA  300

seq1  CACAAACTCACTGAACTACCGTGTTAGCCAAAGTGCACCCTGACTTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACTCACTGAACTACCGTGTTAGCCAAAGTGCACCCTGACTTCATC  350

seq1  TAAGGCAAACATCTCAAGACTTTAATAGCATCCATTCATGTTCAAGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAAACATCTCAAGACTTTAATAGCATCCATTCATGTTCAAGGACT  400

seq1  CCACAAACCAACAGAGAAACCCTCTTTCTTCATAACTCTTAAGCACGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAACCAACAGAGAAACCCTCTTTCTTCATAACTCTTAAGCACGCCC  450

seq1  ACTGCTGGGCAGCTAGGCAAAGTGCCAGGATTCAAAGCCATGCTTCTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGGCAGCTAGGCAAAGTGCCAGGATTCAAAGCCATGCTTCTCTA  500

seq1  AGTCCAGCAGGCAGGCAGGCAGGCTTCGTGCGCTCATTCACACTGAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCAGGCAGGCAGGCAGGCTTCGTGCGCTCATTCACACTGAAACT  550

seq1  GTTGTCTGGGACCAGGTGTGATAAACCATGTGCCACCAGTAGAGTCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTGGGACCAGGTGTGATAAACCATGTGCCACCAGTAGAGTCTTTC  600

seq1  AGAGTAGGGAGAGTTGCGATTTCTGAGTTTGCTTCTTTCAAGGGTCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGGAGAGTTGCGATTTCTGAGTTTGCTTCTTTCAAGGGTCACAG  650

seq1  GTTGCAGACAGATTGCTGGGAAAATTCATTCTCTGAGGACAGCATGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAGACAGATTGCTGGGAAAATTCATTCTCTGAGGACAGCATGCACA  700

seq1  TGCTGACCTCAGCAAGTTCTGAATGTGTGGGCCTCCAGCTCAGGCCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACCTCAGCAAGTTCTGAATGTGTGGGCCTCCAGCTCAGGCCTCCC  750

seq1  CTGTCAGCAAGACTCTGCCCTGTCTCTACTCGCCCCGCCTTCATACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCAAGACTCTGCCCTGTCTCTACTCGCCCCGCCTTCATACCCAC  800

seq1  ACCCATCTTCTTTCAGCAATATCTGACAAGACACTCCGAAGCTGCTAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTTCTTTCAGCAATATCTGACAAGACACTCCGAAGCTGCTAACA  850

seq1  TGAATACTTGTATGGTTTATGGGATTGTTCTAGTGGCTTGGGAAAAATAT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGAATACTTGTATGGTTTATGGGATTGTTCTAGTGGCTT-GGAAAAATAT  899

seq1  GAGTCTGGATATTTGAAAGCCCAGGGTTTATGC-TCAGCCTGCTATCAGT  949
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GAGTCTGGATATTTGAAAGCCCAGGGTTTATGCTTCAGCCTGCTATCAGT  949

seq1  TGGATCCTCTCAGACCAATCAGTAATCAAGAAAATGCCACCACACATGCA  999
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGGAT-CTCTCAGACCAATCAGTAATCAAGAAAATGCCA-CACACATGCA  997

seq1  CCTTTAGGCCAGTCTGATGGGGGCTACTCATCAGTTGAGATGCCCTAGGT  1049
      |||||| ||||||||||| ||||||||||||||| ||||||| |||||||
seq2  CCTTTAAGCCAGTCTGAT-GGGGCTACTCATCAG-TGAGATG-CCTAGGT  1044

seq1  TTGTGTCAAGACAAAGCCAGACAGCACACATACTAGGTACCAGCCACTAG  1099
      ||||||||  |||||||||||||||| |||||||| ||| ||||||||||
seq2  TTGTGTCAGAACAAAGCCAGACAGCA-ACATACTA-GTA-CAGCCACTAG  1091

seq1  GAACAGGTGTATTGGGGTTTGTTTTTTTTTTGTTTTTTT  1138
      |||||||  |||  | | |  ||||| || | |||||||
seq2  GAACAGGGTTAT--GCGCTGTTTTTTATTGTATTTTTTT  1128