BAC Information

Click to search

BAC

Clone NameB6Ng01-119D14
Chromosome3 (Build37)
Map Location 79,654,851 - 79,656,057
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144
Downstream gene1110032E23Rik, EG626797, Gria2, Glrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119D14.bB6Ng01-119D14.g
ACCDH923495DH923496
length1,1831,136
definitionDH923495|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D14, 5' end.DH923496|Mus musculus domesticus DNA, BAC clone: B6Ng01-119D14, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctggggacggtcctgaccaaaacccatcgattgatcagcactga
ctctttaataaagcttgcttcaaatttggcccaaaatatcggattttttt
tttctggagaatctcaagatgaacaggttctccaataaagaatacaacta
ttgcagttactaacttttcaagagagttaaagctctactcttcataaagt
taataattctaaaaataaaccaaatacactttaatcacatattttcagct
taaggaaatgttaactacctacttatttatatttgcttctaaactttttt
catttaagttggcgcacgcgcgtgcgtgcgtgagagagagagagagagag
agagagagagagagagacttgcatatcagtaaggcacccacaaagaccag
atgagaagcagactcataaacctggctggcgaatggagtctctggacctg
gagctgccaggcagtcctgagacgagtgtgcgttattttagagatagaat
ccagagccttgggcacagtaggtaaatattctgaccgagctacttctcat
tctagcccttacttttttctaagtccgtgtttcactgtcttaggctggtc
ccagactcatgttcctcctgcctctgccttctgagtggttggatcataag
ctgtgtcactatgcttagctggggtctcttagggtctaaatattcatgct
attcatttgagagattcctgtgaagtacctgctgtgaaccagacactctt
catgacactgggaatagataacaacaacaacaacaaaacaacaaaaatca
aaaacaaaaaacaaaaaaaatcctctataccaatttaacttacaaccaaa
tgagagggtaatgaatgatatctatggtatgttgtaagggtccctgattc
tctgaagaatgataccccgaacttgaagtgtgtaaatggaaagagtgttt
tattctgcagaagtctagcatcctggggtctccattaccaagatggagac
acacccaaggagcttgcagcctaatataaagcacattaggattctgggta
gtgactacatgtatctgttggccatctctacggacatccattactgggtg
tgggaggctggaaactgcaggagtcctgaaaatgtcacagaagtactgag
atctgggaacttgctgctgaccatgtcctgcct
gaattctcagctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaacttaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccat
ggaggagctagagaaagtacccaggagctaaagggatctcaccctatagt
gaacaacatatgactacagtaccctgagctctgactctagctgcatatgt
atcaaaggatgctagtcgcaatcctgaaagagaggccattaaccgcaact
tggtgctcgtacaggacgccagtcaagagaatgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79654851_79656057
seq2: B6Ng01-119D14.b_46_1228

seq1  GAATTCCTGGGGACGGTCCTGACCAAAACCCATCGATTGATCAGCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGACGGTCCTGACCAAAACCCATCGATTGATCAGCACTGA  50

seq1  CTCTTTAATAAAGCTTGCTTCAAATTTGGCCCAAAATATCGGATTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAATAAAGCTTGCTTCAAATTTGGCCCAAAATATCGGATTTTTTT  100

seq1  TTTCTGGAGAATCTCAAGATGAACAGGTTCTCCAATAAAGAATACAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGAATCTCAAGATGAACAGGTTCTCCAATAAAGAATACAACTA  150

seq1  TTGCAGTTACTAACTTTTCAAGAGAGTTAAAGCTCTACTCTTCATAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTACTAACTTTTCAAGAGAGTTAAAGCTCTACTCTTCATAAAGT  200

seq1  TAATAATTCTAAAAATAAACCAAATACACTTTAATCACATATTTTCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTCTAAAAATAAACCAAATACACTTTAATCACATATTTTCAGCT  250

seq1  TAAGGAAATGTTAACTACCTACTTATTTATATTTGCTTCTAAACTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAATGTTAACTACCTACTTATTTATATTTGCTTCTAAACTTTTTT  300

seq1  CATTTAAGTTGGCGCACGCGCGTGCGTGCGTGAGAGAGAGAGAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAGTTGGCGCACGCGCGTGCGTGCGTGAGAGAGAGAGAGAGAGAG  350

seq1  AGAGAGAGAGAGAGAGACTTGCATATCAGTAAGGCACCCACAAAGACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGACTTGCATATCAGTAAGGCACCCACAAAGACCAG  400

seq1  ATGAGAAGCAGACTCATAAACCTGGCTGGCGAATGGAGTCTCTGGACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGCAGACTCATAAACCTGGCTGGCGAATGGAGTCTCTGGACCTG  450

seq1  GAGCTGCCAGGCAGTCCTGAGACGAGTGTGCGTTATTTTAGAGATAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCCAGGCAGTCCTGAGACGAGTGTGCGTTATTTTAGAGATAGAAT  500

seq1  CCAGAGCCTTGGGCACAGTAGGTAAATATTCTGACCGAGCTACTTCTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCTTGGGCACAGTAGGTAAATATTCTGACCGAGCTACTTCTCAT  550

seq1  TCTAGCCCTTACTTTTTTCTAAGTCCGTGTTTCACTGTCTTAGGCTGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCCTTACTTTTTTCTAAGTCCGTGTTTCACTGTCTTAGGCTGGTC  600

seq1  CCAGACTCATGTTCCTCCTGCCTCTGCCTTCTGAGTGGTTGGATCATAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTCATGTTCCTCCTGCCTCTGCCTTCTGAGTGGTTGGATCATAAG  650

seq1  CTGTGTCACTATGCTTAGCTGGGGTCTCTTAGGGTCTAAATATTCATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCACTATGCTTAGCTGGGGTCTCTTAGGGTCTAAATATTCATGCT  700

seq1  ATTCATTTGAGAGATTCCTGTGAAGTACCTGCTGTGAACCAGACACTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTGAGAGATTCCTGTGAAGTACCTGCTGTGAACCAGACACTCTT  750

seq1  CATGACACTGGGAATAGATAACAACAACAACAACAAAACAACAAAAATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACACTGGGAATAGATAACAACAACAACAACAAAACAACAAAAATCA  800

seq1  AAAACAAAAAACAAAAAAAATCCTCTATACCAATTTAACTTACAACCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAACAAAAAAAATCCTCTATACCAATTTAACTTACAACCAAA  850

seq1  TGAGAGGGTAATGAATGATATCTATGGTATGTTGTAAGGGTCCCTGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGGTAATGAATGATATCTATGGTATGTTGTAAGGGTCCCTGATTC  900

seq1  TCTGAAGAATGATACCCCGAACTTGAAGTGTGTAAATGGAAAGAGTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAATGATACCCCGAACTTGAAGTGTGTAAATGGAAAGAGTGTTT  950

seq1  TATTCTGCAGAAGTCTAGCATCCTGGGGTCTCCATTACCAAGATGGAGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCAGAAGTCTAGCATCCTGGGGTCTCCATTACCAAGATGGAGAC  1000

seq1  ACACCCAAGGGAGCTTGCAGGCCTAATATAAAGCACATTAGGGAATTCTG  1050
      |||||||| |||||||||| ||||||||||||||||||||||  ||||| 
seq2  ACACCCAA-GGAGCTTGCA-GCCTAATATAAAGCACATTAGG--ATTCT-  1045

seq1  GGGTAGGTGACTTACATGTTAATCTGTTGGGCCCATCTCTACGGACATTC  1100
      ||||| ||||| |||||||  |||||||||  ||||||||||||||| ||
seq2  GGGTA-GTGAC-TACATGT--ATCTGTTGG--CCATCTCTACGGACA-TC  1088

seq1  CATTACCTGGGTGT-GGAGGCTGGAAACTTGCCGGGGAGGTCTGAAAAAT  1149
      ||||| |||||||| ||||||||||||| |||   ||||  ||| |||||
seq2  CATTA-CTGGGTGTGGGAGGCTGGAAAC-TGC--AGGAGTCCTG-AAAAT  1133

seq1  GTCACCAAGGAAGTAGCTGAGGAATCTGGGAAC-TGCTGCTGACCCATTG  1198
      |||||    |||||| |||||  |||||||||| |||||||||||   ||
seq2  GTCAC---AGAAGTA-CTGAG--ATCTGGGAACTTGCTGCTGACC--ATG  1175

seq1  TCCCTGCCT  1207
      | |||||||
seq2  T-CCTGCCT  1183