BAC Information

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BAC

Clone NameB6Ng01-119G23
Chromosome3 (Build37)
Map Location 44,992,225 - 45,163,643
singlet/doubletdoublet
Overlap geneLOC100039296
Upstream geneLOC676484
Downstream genePcdh10, LOC100039282, LOC433580, LOC671801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119G23.bB6Ng01-119G23.g
ACCDH923648DH923649
length1,112536
definitionDH923648|Mus musculus domesticus DNA, BAC clone: B6Ng01-119G23, 5' end.DH923649|Mus musculus domesticus DNA, BAC clone: B6Ng01-119G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,992,225 - 44,993,332)(45,163,102 - 45,163,643)
sequence
gaattcagaaaacaaatgatacaaaactgtattatctcatatcacatatc
atatcactataaagactcacaggtaggattaaaaaagaataaaccgcata
acagataattcttgtaaaataggcttatgcttaaaatctgagttaatttg
aaagttaatttacataagaaataaaacatttatcctatgaagcttaccta
aaagagaatttcatgaaacatgttgggcacagtaattgacttattttctt
cctcctccacctcctctttctctttctcttcttcttcttcttgttcttct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
tcaccttctccttctccttctccctctccatcttccccttcccctctctc
tccccctcccctccctttaccctccccatcccactttcctccttctcctc
ctctttcttttcttctctgagatatgttacagtgtgtattgcccagccag
accagactgatgatgaacttataccatttctacttcattttccttccatg
agttgcagtttttggcatccaccaaagcacaaggctgtgacctacaaccc
attcctcacactcttttttttcccttgaattattttatttatttacagtc
caaatgtcacccccacttcttggtctccttccaagagttcttcaccccct
atcctttgcctctgagaaggtcctccccacactagacctgaccaaccccc
tcacccacctatttacccatccctacctcatatccccaaattccttttcc
ttgggacatcaagtctctaatggattaggtggattctctcccactgaggc
cagacaaggcagttcctctactatatatgtgcccaggaccacagactagc
acatgtatgctctttgataggtggcttagtttctgcaagctaaactaata
ctgttggtcttcctatggggttgccattgccttcaggtccttcaatcttt
ccatacttctccaaaagggtaaccaactcaagtaaaatggttggctgtaa
atattttgcatctttctcttttcagctggccgggaaaacttctccacagg
gacaggcatgct
tctttaagatttaaggagtgtgatttcttttttctttcatttttttctat
tgagcacagttattgtggtgcattttataaaaaatatttgtaacctcatt
gaagaaattccacatcccatgatgataaagaggacttctggacagatcct
gagtgatgtggcagagcatatgtgcacctacctgcctaaaggttttcatt
agcatcaaatagatttctgtcttttttaaacactcttagggtttttctgt
tcagtatagctaagctaatctgattgcttacatagatttggatcagatat
ctcttatgaatctagtcctgtattacaaactgctagttaatactaaaaat
gaacctacagcctatcttgtcagaaaccatttccaactttgccttcccta
aacttctctttccaacatggtgattggcatctgacatgcatctccttatg
tccttaaaacctattacctagctatttttaaaattatgaatgtgtatata
tacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_44992225_44993332
seq2: B6Ng01-119G23.b_50_1161

seq1  GAATTCAGAAAACAAATGATACAAAACTGTATTATCTCATATCACATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAACAAATGATACAAAACTGTATTATCTCATATCACATATC  50

seq1  ATATCACTATAAAGACTCACAGGTAGGATTAAAAAAGAATAAACCGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTATAAAGACTCACAGGTAGGATTAAAAAAGAATAAACCGCATA  100

seq1  ACAGATAATTCTTGTAAAATAGGCTTATGCTTAAAATCTGAGTTAATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAATTCTTGTAAAATAGGCTTATGCTTAAAATCTGAGTTAATTTG  150

seq1  AAAGTTAATTTACATAAGAAATAAAACATTTATCCTATGAAGCTTACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTAATTTACATAAGAAATAAAACATTTATCCTATGAAGCTTACCTA  200

seq1  AAAGAGAATTTCATGAAACATGTTGGGCACAGTAATTGACTTATTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATTTCATGAAACATGTTGGGCACAGTAATTGACTTATTTTCTT  250

seq1  CCTCCTCCACCTCCTCTTTCTCTTTCTCTTCTTCTTCTTCTTCTTCTTCT  300
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTCCTCCACCTCCTCTTTCTCTTTCTCTTCTTCTTCTTCTTGTTCTTCT  300

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  350

seq1  TCACCTTCTCCTTCTCCTTCTCCCTCTCCATCTTCCCCTTCCCCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCTCCTTCTCCTTCTCCCTCTCCATCTTCCCCTTCCCCTCTCTC  400

seq1  TCCCCCTCCCCTCCCTTTACCCTCCCCATCCCACTTTCCTCCTTCTCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTCCCCTCCCTTTACCCTCCCCATCCCACTTTCCTCCTTCTCCTC  450

seq1  CTCTTTCTTTTCTTCTCTGAGATATGTTACAGTGTGTATTGCCCAGCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTTTCTTCTCTGAGATATGTTACAGTGTGTATTGCCCAGCCAG  500

seq1  ACCAGACTGATGATGAACTTATACCATTTCTACTTCATTTTCCTTCCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACTGATGATGAACTTATACCATTTCTACTTCATTTTCCTTCCATG  550

seq1  AGTTGCAGTTTTTGGCATCCACCAAAGCACAAGGCTGTGACCTACAACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCAGTTTTTGGCATCCACCAAAGCACAAGGCTGTGACCTACAACCC  600

seq1  ATTCCTCACACTCTTTTTTTTCCCTTGAATTATTTTATTTATTTACAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCACACTCTTTTTTTTCCCTTGAATTATTTTATTTATTTACAGTC  650

seq1  CAAATGTCACCCCCACTTCTTGGTCTCCTTCCAAGAGTTCTTCACCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCACCCCCACTTCTTGGTCTCCTTCCAAGAGTTCTTCACCCCCT  700

seq1  ATCCTTTGCCTCTGAGAAGGTCCTCCCCACACTAGACCTGACCAACCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTGCCTCTGAGAAGGTCCTCCCCACACTAGACCTGACCAACCCCC  750

seq1  TCACCCACCTATTTACCCATCCCTACCTCATATCCCCAAATTCCTCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCACCCACCTATTTACCCATCCCTACCTCATATCCCCAAATTCCTTTTCC  800

seq1  TTGGGACATCAAGTCTCTAATGGATTAGGTGGATTCTCTCCCACTGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACATCAAGTCTCTAATGGATTAGGTGGATTCTCTCCCACTGAGGC  850

seq1  CAGACAAGGCAG-TCCTCTACTATATATGTGCCCAGGACCACAGACTAGC  899
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGACAAGGCAGTTCCTCTACTATATATGTGCCCAGGACCACAGACTAGC  900

seq1  ACATGTATGCTCTTTGATAGGTGGCTTAGTTTCTGCAAGCTAAACTAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGCTCTTTGATAGGTGGCTTAGTTTCTGCAAGCTAAACTAATA  950

seq1  CTGTTGGTCTTCCTATGGGGTTGCCATTGCCTTCAGGTCCTTCAATCCTT  999
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTGTTGGTCTTCCTATGGGGTTGCCATTGCCTTCAGGTCCTTCAAT-CTT  999

seq1  CCCATAACTCTTCCAAAAGGGTCACCAACCTCAGTAAAATGGTTGGCTGT  1049
       |||| |||  ||||||||||| ||||||   ||||||||||||||||||
seq2  TCCAT-ACTTCTCCAAAAGGGTAACCAACTCAAGTAAAATGGTTGGCTGT  1048

seq1  AAATA-TTTGCATCTATCTC-TTTCAGCT-GCTGGTAGAAACTCT-CACA  1095
      ||||| ||||||||| |||| |||||||| || || | ||  ||| ||||
seq2  AAATATTTTGCATCTTTCTCTTTTCAGCTGGCCGGGAAAACTTCTCCACA  1098

seq1  -GGACAGGCATGCT  1108
       |||||||||||||
seq2  GGGACAGGCATGCT  1112

seq1: chr3_45163102_45163643
seq2: B6Ng01-119G23.g_66_607 (reverse)

seq1  CACACACACACACACACACACACACACACACATGTATATATACACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACATGTATATATACACATTCA  50

seq1  TAATTTTAAAAATAGCTAGGTAATAGGTTTTAAGGACATAAGGAGATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAAAAATAGCTAGGTAATAGGTTTTAAGGACATAAGGAGATGCA  100

seq1  TGTCAGATGCCAATCACCATGTTGGAAAGAGAAGTTTAGGGAAGGCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGATGCCAATCACCATGTTGGAAAGAGAAGTTTAGGGAAGGCAAAG  150

seq1  TTGGAAATGGTTTCTGACAAGATAGGCTGTAGGTTCATTTTTAGTATTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAATGGTTTCTGACAAGATAGGCTGTAGGTTCATTTTTAGTATTAA  200

seq1  CTAGCAGTTTGTAATACAGGACTAGATTCATAAGAGATATCTGATCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTTTGTAATACAGGACTAGATTCATAAGAGATATCTGATCCAAA  250

seq1  TCTATGTAAGCAATCAGATTAGCTTAGCTATACTGAACAGAAAAACCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAAGCAATCAGATTAGCTTAGCTATACTGAACAGAAAAACCCTA  300

seq1  AGAGTGTTTAAAAAAGACAGAAATCTATTTGATGCTAATGAAAACCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTTAAAAAAGACAGAAATCTATTTGATGCTAATGAAAACCTTTA  350

seq1  GGCAGGTAGGTGCACATATGCTCTGCCACATCACTCAGGATCTGTCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTAGGTGCACATATGCTCTGCCACATCACTCAGGATCTGTCCAGA  400

seq1  AGTCCTCTTTATCATCATGGGATGTGGAATTTCTTCAATGAGGTTACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTTTATCATCATGGGATGTGGAATTTCTTCAATGAGGTTACAAA  450

seq1  TATTTTTTATAAAATGCACCACAATAACTGTGCTCAATAGAAAAAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTATAAAATGCACCACAATAACTGTGCTCAATAGAAAAAAATGA  500

seq1  AAGAAAAAAGAAATCACACTCCTTAAATCTTAAAGAGAATTC  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAAGAAATCACACTCCTTAAATCTTAAAGAGAATTC  542