BAC Information

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BAC

Clone NameB6Ng01-119I13
Chromosome3 (Build37)
Map Location 122,479,575 - 122,480,652
singlet/doubletsinglet
Overlap genePde5a
Upstream geneAbcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726, Bcar3, Fnbp1l, Ppia-ps3_2252.1
Downstream geneLOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119I13.bB6Ng01-119I13.g
ACCDH923722DH923723
length1,0721,163
definitionDH923722|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I13, 5' end.DH923723|Mus musculus domesticus DNA, BAC clone: B6Ng01-119I13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccggtttaagagcactgggtcttccttttttttttttttcttt
tttttggtgctgggaattgaactttgggctttacccacggtgaagtcaag
agacctgccattgagatggagttccagacataacattaattctgaaaaga
gaaaatagagtgtggagaagtttatggattacaaagtcatagaaaatgat
tacacaaaactgaaggtttccttaaatctccagtcttaaccaggtgacct
gacatacaggcatggtaagaagagagagaccttgtgagactcgtacagaa
acaaaaccaagcattacaaaaagcttagaaatataattatataaggcaac
ataggtcctattttatatataatagataacacacacacacaaagcatttg
taaagaaccaagagtcagaacctgaatgctcctcagaagatcgatgactt
aaagtcagagatacagcttcataccaagcagccgggcgcaatggtaagtc
gggcaccctcatccatgcaaggattcacagagacaacgtcctccatgctg
cttcttagacatttgactgagaacatgctggagcaaatcaggagttacgt
gaacaaggagttgagagacccagaaaatagaatttccctaagtggagcgt
ggaggaaagttccatgtggctgtaacgcacaccaggcacagagggggact
ttcaggtgacaggaaatatggaaatccttaatttagacatctgaaaaaaa
aaagaagacctctaggaaatgtgtgagagagttgagtgtgggggtggggg
gcaggaacagaagatacattagagcaaacagttccagaaacagggaattt
attaatattgggaggaaattaaagtttttcagcaagagccatacagatat
attcatagcataattaaaaattagactaacataaacaaaacttaagaacc
gttcatcttggctgtagaccaatatgtaatttagcaacttcagcaattag
tagaaaaaaagtttcatatagcaggtctagaaatatgattggtggaagga
tgtccatgaagacctaaggatg
gaattcagaactcttcagctggggaacggtggtaataaagtgttcccaca
acacagactgttgagaaggattcaactgcgtgaattcagaactcttcagc
tggggaatggtggtaatgaagtgttcccgtaacacagactgttgagaagg
attcaactgcgtgaattcagaactcttcagctggggaacagggtacccgt
aagtatagctttacaaggtaagtctggtcttgaactttctaacgaaattc
aagacagtctatcagaagtaaagtggggaatagctttacaaggtacgcct
ggccttgaactttctaacgaaattcaagacagtctatcagaagtaaagtg
ggaaatagctttacaaggtaagtctggtcttgaactttctaacgaaattc
aagacagtctatcagaagtaaagtgggaaatagctttacaaggtatgttt
ggccttgaactttctctagtgttaggagcctttttgttccttttcacatg
ttatcaagcggttaaggcagggctgaaaattctggatgaaattcagggca
atctatcagaagtaaagcggggagagagagtaggagcaaagaggaaatat
ggtgcacagaataagtatacaggcctttccacgggtcttgaacccgagga
aaagtttaggtcaggtaagaatacctggggagagattagaaggaaggaaa
agaaaaaagaaaagaaaaaagatcaattagcggaggtctctaggagaagg
agcctatactcatcactagatgagctcaaggagccagttcttagtagttc
tgaatcagatgaaaaggctattagggcctggaaggcgctctcccgagcag
gtgaagccactggacaactaacaaagatcgtccagggacctcaggagtca
tttctcagattttgtggccagaatgacagaggcagcagagcgtattttgg
agattcagagcaagcgcactctggtagaacagctcatttatgagcagcac
gcagatgcagagcgtcatagcctcaagaagacaagttacagactggctca
gttgtcggagcttgggactcttcacaatgcagcttagcggcgccatctca
atccaaatgtccatgggcagaaataatccacgcatagatctggtcaggaa
cacatatgagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122479575_122480652
seq2: B6Ng01-119I13.b_43_1114 (reverse)

seq1  CATCCTTGGGGTCTTCCT-GACATCCTTCC-CCAATCCTATTTCTTAGAC  48
      |||||||  ||||||| | ||||||||||| |||||| |||||| |||||
seq2  CATCCTT-AGGTCTTCATGGACATCCTTCCACCAATCATATTTC-TAGAC  48

seq1  CTGCTATCTGAAACTTTTTTTTCTTATTAATTGCTGAAGTTGCTAATATA  98
      ||||||| |||||||||||||   || |||||||||||||||||||  ||
seq2  CTGCTATATGAAACTTTTTTT--CTACTAATTGCTGAAGTTGCTAAATTA  96

seq1  CATATTGGTCTACAGCCATGATGAACTGTTCTTAAGTTTTGTTTATGTTA  148
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  CATATTGGTCTACAGCCAAGATGAACGGTTCTTAAGTTTTGTTTATGTTA  146

seq1  GTTCTAATTTTTAATTATGCTATGAATATATCTGTATTGCTCTTGCTGTA  198
      | ||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  G-TCTAATTTTTAATTATGCTATGAATATATCTGTATGGCTCTTGCTGAA  195

seq1  TAACTTTTAATTTCCT-CCAATATTAATTAATTCCCTTGTTTCTTGGAAC  247
       ||| ||||||||||| ||||||||||| ||||||| |||||| ||||||
seq2  AAAC-TTTAATTTCCTCCCAATATTAATAAATTCCC-TGTTTC-TGGAAC  242

seq1  TGTTTGCTCTAATGTAATCTTCTGTTCCTGCCCCCCACCCCCACACTCAA  297
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTCTAATGT-ATCTTCTGTTCCTGCCCCCCACCCCCACACTCAA  291

seq1  CTCTCTCACACATTTCCTAGAGGTCTTCTTTTTTTTTTCAGATGTCTAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCACACATTTCCTAGAGGTCTTCTTTTTTTTTTCAGATGTCTAAA  341

seq1  TTAAGGATTTCCATATTTCCTGTCACCTGAAAGTCCCCCTCTGTGCCTGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGATTTCCATATTTCCTGTCACCTGAAAGTCCCCCTCTGTGCCTGG  391

seq1  TGTGCGTTACAGCCACATGGAACTTTCCTCCACGCTCCACTTAGGGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGTTACAGCCACATGGAACTTTCCTCCACGCTCCACTTAGGGAAAT  441

seq1  TCTATTTTCTGGGTCTCTCAACTCCTTGTTCACGTAACTCCTGATTTGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCTGGGTCTCTCAACTCCTTGTTCACGTAACTCCTGATTTGCT  491

seq1  CCAGCATGTTCTCAGTCAAATGTCTAAGAAGCAGCATGGAGGACGTTGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGTTCTCAGTCAAATGTCTAAGAAGCAGCATGGAGGACGTTGTC  541

seq1  TCTGTGAATCCTTGCATGGATGAGGGTGCCCGACTTACCATTGCGCCCGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAATCCTTGCATGGATGAGGGTGCCCGACTTACCATTGCGCCCGG  591

seq1  CTGCTTGGTATGAAGCTGTATCTCTGACTTTAAGTCATCGATCTTCTGAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGTATGAAGCTGTATCTCTGACTTTAAGTCATCGATCTTCTGAG  641

seq1  GAGCATTCAGGTTCTGACTCTTGGTTCTTTACAAATGCTTTGTGTGTGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTCAGGTTCTGACTCTTGGTTCTTTACAAATGCTTTGTGTGTGTG  691

seq1  TGTTATCTATTATATATAAAATAGGACCTATGTTGCCTTATATAATTATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTATTATATATAAAATAGGACCTATGTTGCCTTATATAATTATA  741

seq1  TTTCTAAGCTTTTTGTAATGCTTGGTTTTGTTTCTGTACGAGTCTCACAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGCTTTTTGTAATGCTTGGTTTTGTTTCTGTACGAGTCTCACAA  791

seq1  GGTCTCTCTCTTCTTACCATGCCTGTATGTCAGGTCACCTGGTTAAGACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTCTCTTCTTACCATGCCTGTATGTCAGGTCACCTGGTTAAGACT  841

seq1  GGAGATTTAAGGAAACCTTCAGTTTTGTGTAATCATTTTCTATGACTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTTAAGGAAACCTTCAGTTTTGTGTAATCATTTTCTATGACTTTG  891

seq1  TAATCCATAAACTTCTCCACACTCTATTTTCTCTTTTCAGAATTAATGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCATAAACTTCTCCACACTCTATTTTCTCTTTTCAGAATTAATGTT  941

seq1  ATGTCTGGAACTCCATCTCAATGGCAGGTCTCTTGACTTCACCGTGGGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGAACTCCATCTCAATGGCAGGTCTCTTGACTTCACCGTGGGTA  991

seq1  AAGCCCAAAGTTCAATTCCCAGCACCAAAAAAAAGAAAAAAAAAAAAAAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAAAGTTCAATTCCCAGCACCAAAAAAAAGAAAAAAAAAAAAAAG  1041

seq1  GAAGACCCAGTGCTCTTAAACCGGAGAATTC  1078
      |||||||||||||||||||||||||||||||
seq2  GAAGACCCAGTGCTCTTAAACCGGAGAATTC  1072