BAC Information

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BAC

Clone NameB6Ng01-120A05
Chromosome3 (Build37)
Map Location 130,558,333 - 130,681,873
singlet/doubletdoublet
Overlap geneLOC545568
Upstream geneCfi, Pla2g12a, Casp6, Ccdc109b, Sec24b, EG668844, EG668845, Col25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811
Downstream geneLef1, 6720418B01Rik, Hadh, Cyp2u1, Sgms2, LOC100043443, Papss1, Olfr375-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120A05.bB6Ng01-120A05.g
ACCDH924074DH924075
length1,063947
definitionDH924074|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A05, 5' end.DH924075|Mus musculus domesticus DNA, BAC clone: B6Ng01-120A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,558,333 - 130,559,404)(130,680,921 - 130,681,873)
sequence
gaattccatcagttggagcgaatagaaatgctcatcagagagcccccacc
actaaaggagggtgctgttggagaccagccaccctcagtcaactcaccag
tttgacccaagatgcaaatgaatccagcccgccttagccaggcttccaag
aaggtagcgaatgacctgcattggaagtccaggactggtagagaagagag
agattcatgaagacgtcgggatggaaatcatccttgaccaatctcctgtg
tgcagtgtttggagtcccgagaacttcaaatgctgaagaagggtggcaca
catccccagggattccatgcctctcgggaagtggagagaagtaggtttta
cagtcccagctcccagatgtacacacagtctacctactgcacggcaacga
aggtggcatttgacatttaggttaattaaactttttaataaaaactttgg
ggtatgaatgcttatctcatatttcagacattcccaggagtgcttagaaa
ggggctcagcatagaaaaaaaaatgccagctggcaacactctgtgaagct
aattaccatgaagttagaaagatttacactaaagggcttgcaatagatct
tggtcgattcagaaggtaacttaccaagttttgttagattctcatcatat
gtatggtccctcaccttccacagaaaagcagggagagattctgttactct
gtgtttcccagatgttggctatcccttaaacttccttttgaaccattggc
ggtccagatgctaacaccacgtgagggttcataagtatattacatataca
catattacatatgtaatatatctattcatgctaccagttctgttccctgc
ctaatacgataacatagcacattgtgtttttctttgctcttcagagcaaa
gtcacaaacatatgcatatgccactgatattcttaatggaggatatgctt
ctgctggatcttctgatggggggtgggggggaagacatggacactggaag
gactttacaacttcaattctgtgctatgcattgttcaaggaatgagggta
aatactctctccc
gaattcccatcaaaggaaacctttgcaaaggtcctgacgccaggggaaag
tggcacactaaggacttaaggtgaccagaatggggacggcaagggaaagt
ggtccaggtaacgcctgaaaggtgagcggaggctcagcgttggagctctg
caaactacttagaggaattatgtccggtccaaagcggtcaggaaaggctt
ttaagagacaaaggggagagggggacccctaaacaaaagacacctggaca
ggctaaatttactttttaaagtggaattaggaataacaacaagttttcca
gactcaaagcaaaaggatgttgttttaaaagttatcacgactttcaaggt
ggtaattggtgctggagcttgggggaggggacttgcctagcatttgcaaa
gttctagcttccgtcttcagtggtggttggggcggttgggagggagaaat
gaaaaactgtaactgcagagacttaaggccagcgtgatccgcttctaaac
cagtcctgggcacagcagtccatggtgagagttgttgtgcagatttttta
aaaattgatttccgtggctctctcaccgtcatcatggatatcagtcttcc
cggggctgtgccttatgcagacagtaggtcatttctctctgtggctgtga
cttaagcaggcagtaggtattcagtatagcttgtggaactaaacacatca
attctagtgtttccttctagcgtgcagaaacccctggaacctcagcctac
aatcttactgccatttaagtggttaatgaactagaggagaagagcctggc
ctcttcccctgggcccccaggcctgtgataaagctctgccccaaacttgc
ttctacttctgcacgaaaccactgcactcctgcgcggtgtgctagggttg
cctctggagtctgagtggggacttttcaggttaataatttttttctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_130558333_130559404
seq2: B6Ng01-120A05.b_47_1109

seq1  GAATTCCATCAGTTGGAGCGAATAGAAATGCTCATCAGAGAGCCCCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCAGTTGGAGCGAATAGAAATGCTCATCAGAGAGCCCCCACC  50

seq1  ACTAAAGGAGGGTGCTGTTGGAGACCAGCCACCCTCAGTCAACTCACCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGAGGGTGCTGTTGGAGACCAGCCACCCTCAGTCAACTCACCAG  100

seq1  TTTGACCCAAGATGCAAATGAATCCAGCCCGCCTTAGCCAGGCTTCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCCAAGATGCAAATGAATCCAGCCCGCCTTAGCCAGGCTTCCAAG  150

seq1  AAGGTAGCGAATGACCTGCATTGGAAGTCCAGGACTGGTAGAGAAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCGAATGACCTGCATTGGAAGTCCAGGACTGGTAGAGAAGAGAG  200

seq1  AGATTCATGAAGACGTCGGGATGGAAATCATCCTTGACCAATCTCCTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCATGAAGACGTCGGGATGGAAATCATCCTTGACCAATCTCCTGTG  250

seq1  TGCAGTGTTTGGAGTCCCGAGAACTTCAAATGCTGAAGAAGGGTGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGTTTGGAGTCCCGAGAACTTCAAATGCTGAAGAAGGGTGGCACA  300

seq1  CATCCCCAGGGATTCCATGCCTCTCGGGAAGTGGAGAGAAGTAGGTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAGGGATTCCATGCCTCTCGGGAAGTGGAGAGAAGTAGGTTTTA  350

seq1  CAGTCCCAGCTCCCAGATGTACACACAGTCTACCTACTGCACGGCAACGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAGCTCCCAGATGTACACACAGTCTACCTACTGCACGGCAACGA  400

seq1  AGGTGGCATTTGACATTTAGGTTAATTAAACTTTTTAATAAAAACTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCATTTGACATTTAGGTTAATTAAACTTTTTAATAAAAACTTTGG  450

seq1  GGTATGAATGCTTATCTCATATTTCAGACATTCCCAGGAGTGCTTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAATGCTTATCTCATATTTCAGACATTCCCAGGAGTGCTTAGAAA  500

seq1  GGGGCTCAGCATAGAAAAAAAAATGCCAGCTGGCAACACTCTGTGAAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCAGCATAGAAAAAAAAATGCCAGCTGGCAACACTCTGTGAAGCT  550

seq1  AATTACCATGAAGTTAGAAAGATTTACACTAAAGGGCTTGCAATAGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACCATGAAGTTAGAAAGATTTACACTAAAGGGCTTGCAATAGATCT  600

seq1  TGGTCGATTCAGAAGGTAACTTACCAAGTTTTGTTAGATTCTCATCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCGATTCAGAAGGTAACTTACCAAGTTTTGTTAGATTCTCATCATAT  650

seq1  GTATGGTCCCTCACCTTCCACAGAAAAGCAGGGAGAGATTCTGTTACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTCCCTCACCTTCCACAGAAAAGCAGGGAGAGATTCTGTTACTCT  700

seq1  GTGTTTCCCAGATGTTGGCTATCCCTTAAACTTCCTTTTGAACCATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCCCAGATGTTGGCTATCCCTTAAACTTCCTTTTGAACCATTGGC  750

seq1  GGTCCAGATGCTAACACCACGTGAGGGTTCATAAGTATATTACATATACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAGATGCTAACACCACGTGAGGGTTCATAAGTATATTACATATACA  800

seq1  CATATTACATATGTAATATATCTATTCATGCTACCAGTTCTGTTCCCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTACATATGTAATATATCTATTCATGCTACCAGTTCTGTTCCCTGC  850

seq1  CTAATACGATAACATAGCACATTGTGTTTTTCTTTGCTCTTCAGAGCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACGATAACATAGCACATTGTGTTTTTCTTTGCTCTTCAGAGCAAA  900

seq1  GTCACAAACATATGCATATGCCACTGATATTCTTAATGGAGGATATGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAACATATGCATATGCCACTGATATTCTTAATGGAGGATATGCTT  950

seq1  CCTGCTGGATCTTCTGATGGGGGGT-GGGGGGAAGACACTGTGACAACTG  999
       |||||||||||||||||||||||| |||||||||||| || ||| ||||
seq2  -CTGCTGGATCTTCTGATGGGGGGTGGGGGGGAAGACA-TG-GAC-ACTG  996

seq1  TAGGGACTTTACCAGCTCAGTTTCCTGTGTCTATGCATTTGTTCAAAGAA  1049
       | ||||||||| |  ||| ||  ||||| ||||||| |||||||| |||
seq2  GAAGGACTTTACAACTTCAATT--CTGTG-CTATGCA-TTGTTCAAGGAA  1042

seq1  CAGAGGGCAAAATACTCTCTCCC  1072
        |||||  ||||||||||||||
seq2  -TGAGGG-TAAATACTCTCTCCC  1063

seq1: chr3_130680921_130681873
seq2: B6Ng01-120A05.g_65_1011 (reverse)

seq1  AAGAAAAAAATTATTATACATGAAAAGTCCCACCTCAGACTCCAGGAGGC  50
      |||||||||||||||| || |||||||||||  ||||||||||| |||||
seq2  AAGAAAAAAATTATTA-ACCTGAAAAGTCCCCACTCAGACTCCA-GAGGC  48

seq1  AAACCCTGAGCACACCGCGCAGGAGTGGCAGTGGTTTCGTGCAGAAGTAG  100
       |||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  -AACCCT-AGCACACCGCGCAGGAGT-GCAGTGGTTTCGTGCAGAAGTAG  95

seq1  AAGCAAGTTTGGGGCAGAGCTTTATCACAGGCCTGGGGGCCCAGGGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTTTGGGGCAGAGCTTTATCACAGGCCTGGGGGCCCAGGGGAAG  145

seq1  AGGCCAGGCTCTTCTCCTCTAGTTCATTAACCACTTAAATGGCAGTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGGCTCTTCTCCTCTAGTTCATTAACCACTTAAATGGCAGTAAGA  195

seq1  TTGTAGGCTGAGGTTCCAGGGGTTTCTGCACGCTAGAAGGAAACACTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGTAGGCTGAGGTTCCAGGGGTTTCTGCACGCTAGAAGGAAACACT-AG  244

seq1  AATTGATGTGTTTAGTTCCACAAGCTATACTGAATACCTACTGCCTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGTGTTTAGTTCCACAAGCTATACTGAATACCTACTGCCTGCTT  294

seq1  AAGTCACAGCCACAGAGAGAAATGACCTACTGTCTGCATAAGGCACAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAGCCACAGAGAGAAATGACCTACTGTCTGCATAAGGCACAGCC  344

seq1  CCGGGAAGACTGATATCCATGATGACGGTGAGAGAGCCACGGAAATCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGAAGACTGATATCCATGATGACGGTGAGAGAGCCACGGAAATCAAT  394

seq1  TTTTAAAAAATCTGCACAACAACTCTCACCATGGACTGCTGTGCCCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAATCTGCACAACAACTCTCACCATGGACTGCTGTGCCCAGGA  444

seq1  CTGGTTTAGAAGCGGATCACGCTGGCCTTAAGTCTCTGCAGTTACAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTAGAAGCGGATCACGCTGGCCTTAAGTCTCTGCAGTTACAGTTT  494

seq1  TTCATTTCTCCCTCCCAACCGCCCCAACCACCACTGAAGACGGAAGCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTCCCTCCCAACCGCCCCAACCACCACTGAAGACGGAAGCTAG  544

seq1  AACTTTGCAAATGCTAGGCAAGTCCCCTCCCCCAAGCTCCAGCACCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGCAAATGCTAGGCAAGTCCCCTCCCCCAAGCTCCAGCACCAATT  594

seq1  ACCACCTTGAAAGTCGTGATAACTTTTAAAACAACATCCTTTTGCTTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCTTGAAAGTCGTGATAACTTTTAAAACAACATCCTTTTGCTTTGA  644

seq1  GTCTGGAAAACTTGTTGTTATTCCTAATTCCACTTTAAAAAGTAAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAAACTTGTTGTTATTCCTAATTCCACTTTAAAAAGTAAATTTA  694

seq1  GCCTGTCCAGGTGTCTTTTGTTTAGGGGTCCCCCTCTCCCCTTTGTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTCCAGGTGTCTTTTGTTTAGGGGTCCCCCTCTCCCCTTTGTCTCT  744

seq1  TAAAAGCCTTTCCTGACCGCTTTGGACCGGACATAATTCCTCTAAGTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCCTTTCCTGACCGCTTTGGACCGGACATAATTCCTCTAAGTAGT  794

seq1  TTGCAGAGCTCCAACGCTGAGCCTCCGCTCACCTTTCAGGCGTTACCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAGCTCCAACGCTGAGCCTCCGCTCACCTTTCAGGCGTTACCTGG  844

seq1  ACCACTTTCCCTTGCCGTCCCCATTCTGGTCACCTTAAGTCCTTAGTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTTCCCTTGCCGTCCCCATTCTGGTCACCTTAAGTCCTTAGTGTG  894

seq1  CCACTTTCCCCTGGCGTCAGGACCTTTGCAAAGGTTTCCTTTGATGGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTCCCCTGGCGTCAGGACCTTTGCAAAGGTTTCCTTTGATGGGAA  944

seq1  TTC  953
      |||
seq2  TTC  947