BAC Information

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BAC

Clone NameB6Ng01-120B08
Chromosome3 (Build37)
Map Location 18,506,836 - 18,696,279
singlet/doubletdoublet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120B08.bB6Ng01-120B08.g
ACCDH924121DH924122
length1,1251,123
definitionDH924121|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B08, 5' end.DH924122|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,695,160 - 18,696,279)(18,506,836 - 18,507,953)
sequence
gaattctggagggagacagtgggtgtccgttgatacaactctgttctaag
tctcagcctaggggctgttccatgaaaggaaggtaatgtaagactacagg
gagccttagcttactggggactccctgagtgaactacatggagctgggat
cgatgcaaaaagcaagaggaatttattgttccagtgcactggggtggtcc
cagacccgaaggagagatagcaactcccagaacccatttggtgagttttt
atatggtttccaggggcaggatagagcaccagcaactaggcacaatgttt
ggtgaatcagtgcaccctttaaactgattggtctttagggaatgaggtga
caagaacttcccttgtctgaaggtgggcaacagtcaatcctgcagaatgt
gtcccgaccagcaggtcagttcctgccctgtggtctgggaaatgttaatt
ggcctctcccttctggaggggcaagtgtttcttgaccttcccaaagttcc
taagctgagctttgcagtatcactgggatgttggtccttctctggactgc
aaaaccctactacttttgttatatgcaatatcctttctgcccgttttcta
acagtaatcagaataagatcttcacatcactccattggagaaaactgatt
tttccacctcccagcaagtttaaatgacaggtaggtaccctttaccctag
acgctgggttttcattgtttgttcattcattcatccattcattcactcat
tcattcatttatcattcatttaaaatataatataataaaataaagtataa
gataaaacaaaacctcaaaactgtcatataaaaattggagaacacatatt
aacagaagaaaaaagcccaagagaaggcacaacagagacccactcagtag
cacaatcaggattcccataaagacactgaatggaaagccataatacatac
acagaagacatggtgcagacctgtgctggctctgtgtacgctgcttcagt
ctctatgaatttatgtgaattttgctcatgttaataagtagctggactcc
ataaggttttgggtgagttgtgcccacattgccacatacctttattcctg
gtttaagggggaatttttttttttt
gaattccagtgtcacttagctatcaaattactacttttcaaataagaaga
ccaaacttaacaacatgaaagcactccaggacaaaagataaagtaagcgt
tacattctttaatatgcattgaatatttgattaacttgcaagaataaaag
gtgaagtaaagaactgaacatataagacaactttgcatacaaaaataaat
tttaaagggaaaaatgaaatcaagaaatcaataaaaggaatattacatat
cactagaggtatacagcaaaagacattatggagaacagagacaaagatac
aaaaatgcagaatacagagaaaggggcaaatagaatacagagaggagctc
aaaaccaatgtgattaaattccagaagaggagaaagacctagttgccaag
attttaaaaactatgaatggtctcaacctaggaccattcaaagatccatc
aaatgcagagccacataagcaatgaacaggacagttgaaaacattttatt
aggttccaaagcaactgagaagtatgtcaaaggtcacagacatgtagatt
ttaataaacaaagataagatagacaactggcttctcaataaaagtcaaaa
atatactaaattatataacttcaagttctttctcaacaaaatagcttctg
tcaatgaaaatctgttacataggtagctgataaattgctaatatcaaaca
taaaggaaatccttcatcatttataaaaatacatcaaaataaatttaaaa
tgatactttacaaaaatccaaataatcataataatgtagtagtcataaaa
ttcaagaaaaatagatgagctaaacatatagtatataaacaaactgaaca
tccctaatctaaaatctctaaaggctctaaaatcttgacttttctgagca
ccaacttgctacagtgggaaaacccgacctcatggtaacagattcacaaa
agtatcacagagactactatagtggtttggagtatgtttggcactatttg
gaggtaggaccttggttgaagggagtgtttactactgcataggcagcctt
tgaaggcttcatgtgttcaatctcttgccagtgaaaaggaagaggtcttc
tcctggctgccttccagatcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18695160_18696279
seq2: B6Ng01-120B08.b_48_1171 (reverse)

seq1  AAAAAAAAAAATCCCCACTAAACCAAGAAATATAGGTATGTG--CATGTG  48
      |||||||||||| ||| || || | || |||| |||||||||   |||||
seq2  AAAAAAAAAAATTCCCCCTTAAACCAGGAATAAAGGTATGTGGCAATGTG  50

seq1  TGCAC-ACTCACACAAAACC-TATGGAGTCCAGCTACTTATAAACATGAG  96
       |||| |||||| ||||||| |||||||||||||||||||| ||||||||
seq2  GGCACAACTCACCCAAAACCTTATGGAGTCCAGCTACTTATTAACATGAG  100

seq1  CAAAATTCACATAAATTCATAGAGACTGAAGCAGCGTACACAGAGCCAGC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTCACATAAATTCATAGAGACTGAAGCAGCGTACACAGAGCCAGC  150

seq1  ACAGGTCTGCACCATGTCTTCTGTGTATGTATTATGGCTTTCCATTCAGT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTGCACCATGTCTTCTGTGTATGTATTATGGCTTTCCATTCAGT  200

seq1  GTCTTTATGGGATTCCTGATTGTGCTACTGAGTGGGTCTCTGTTGTGCCT  246
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTCTTTATGGGAATCCTGATTGTGCTACTGAGTGGGTCTCTGTTGTGCCT  250

seq1  TCTCTTGGGCTTTTTTCTTCTGTTAATATGTGTTCTCCAATTTTTATATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGGCTTTTTTCTTCTGTTAATATGTGTTCTCCAATTTTTATATG  300

seq1  ACAGTTTTGAGGTTTTGTTTTATCTTATACTTTATTTTATTATATTATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTGAGGTTTTGTTTTATCTTATACTTTATTTTATTATATTATAT  350

seq1  TTTAAATGAATGATAAATGAATGAATGAGTGAATGAATGGATGAATGAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATGAATGATAAATGAATGAATGAGTGAATGAATGGATGAATGAAT  400

seq1  GAACAAACAATGAAAACCCAGCGTCTAGGGTAAAGGGTACCTACCTGTCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAACAATGAAAACCCAGCGTCTAGGGTAAAGGGTACCTACCTGTCA  450

seq1  TTTAAACTTGCTGGGAGGTGGAAAAATCAGTTTTCTCCAATGGAGTGATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACTTGCTGGGAGGTGGAAAAATCAGTTTTCTCCAATGGAGTGATG  500

seq1  TGAAGATCTTATTCTGATTACTGTTAGAAAACGGGCAGAAAGGATATTGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATCTTATTCTGATTACTGTTAGAAAACGGGCAGAAAGGATATTGC  550

seq1  ATATAACAAAAGTAGTAGGGTTTTGCAGTCCAGAGAAGGACCAACATCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACAAAAGTAGTAGGGTTTTGCAGTCCAGAGAAGGACCAACATCCC  600

seq1  AGTGATACTGCAAAGCTCAGCTTAGGAACTTTGGGAAGGTCAAGAAACAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATACTGCAAAGCTCAGCTTAGGAACTTTGGGAAGGTCAAGAAACAC  650

seq1  TTGCCCCTCCAGAAGGGAGAGGCCAATTAACATTTCCCAGACCACAGGGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCTCCAGAAGGGAGAGGCCAATTAACATTTCCCAGACCACAGGGC  700

seq1  AGGAACTGACCTGCTGGTCGGGACACATTCTGCAGGATTGACTGTTGCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGACCTGCTGGTCGGGACACATTCTGCAGGATTGACTGTTGCCC  750

seq1  ACCTTCAGACAAGGGAAGTTCTTGTCACCTCATTCCCTAAAGACCAATCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGACAAGGGAAGTTCTTGTCACCTCATTCCCTAAAGACCAATCA  800

seq1  GTTTAAAGGGTGCACTGATTCACCAAACATTGTGCCTAGTTGCTGGTGCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAGGGTGCACTGATTCACCAAACATTGTGCCTAGTTGCTGGTGCT  850

seq1  CTATCCTGCCCCTGGAAACCATATAAAAACTCACCAAATGGGTTCTGGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGCCCCTGGAAACCATATAAAAACTCACCAAATGGGTTCTGGGA  900

seq1  GTTGCTATCTCTCCTTCGGGTCTGGGACCACCCCAGTGCACTGGAACAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTATCTCTCCTTCGGGTCTGGGACCACCCCAGTGCACTGGAACAAT  950

seq1  AAATTCCTCTTGCTTTTTGCATCGATCCCAGCTCCATGTAGTTCACTCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCTCTTGCTTTTTGCATCGATCCCAGCTCCATGTAGTTCACTCAG  1000

seq1  GGAGTCCCCAGTAAGCTAAGGCTCCCTGTAGTCTTACATTACCTTCCTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCCAGTAAGCTAAGGCTCCCTGTAGTCTTACATTACCTTCCTTT  1050

seq1  CATGGAACAGCCCCTAGGCTGAGACTTAGAACAGAGTTGTATCAACGGAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACAGCCCCTAGGCTGAGACTTAGAACAGAGTTGTATCAACGGAC  1100

seq1  ACCCACTGTCTCCCTCCAGAATTC  1120
      ||||||||||||||||||||||||
seq2  ACCCACTGTCTCCCTCCAGAATTC  1124

seq1: chr3_18506836_18507953
seq2: B6Ng01-120B08.g_67_1189

seq1  GAATTCCAGTGTCACTTAGCTATCAAATTACTACTTTTCAAATAAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTCACTTAGCTATCAAATTACTACTTTTCAAATAAGAAGA  50

seq1  CCAAACTTAACAACATGAAAGCACTCCAGGACAAAAGATAAAGTAAGCGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACTTAACAACATGAAAGCACTCCAGGACAAAAGATAAAGTAAGCGT  100

seq1  TACATTCTTTAATATGCATTGAATATTTGATTAACTTGCAAGAATAAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCTTTAATATGCATTGAATATTTGATTAACTTGCAAGAATAAAAG  150

seq1  GTGAAGTAAAGAACTGAACATATAAGACAACTTTGCATACAAAAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTAAAGAACTGAACATATAAGACAACTTTGCATACAAAAATAAAT  200

seq1  TTTAAAGGGAAAAATGAAATCAAGAAATCAATAAAAGGAATATTACATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGGAAAAATGAAATCAAGAAATCAATAAAAGGAATATTACATAT  250

seq1  CACTAGAGGTATACAGCAAAAGACATTATGGAGAACAGAGACAAAGATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGAGGTATACAGCAAAAGACATTATGGAGAACAGAGACAAAGATAC  300

seq1  AAAAATGCAGAATACAGAGAAAGGGGCAAATAGAATACAGAGAGGAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCAGAATACAGAGAAAGGGGCAAATAGAATACAGAGAGGAGCTC  350

seq1  AAAACCAATGTGATTAAATTCCAGAAGAGGAGAAAGACCTAGTTGCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAATGTGATTAAATTCCAGAAGAGGAGAAAGACCTAGTTGCCAAG  400

seq1  ATTTTAAAAACTATGAATGGTCTCAACCTAGGACCATTCAAAGATCCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAAACTATGAATGGTCTCAACCTAGGACCATTCAAAGATCCATC  450

seq1  AAATGCAGAGCCACATAAGCAATGAACAGGACAGTTGAAAACATTTTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGAGCCACATAAGCAATGAACAGGACAGTTGAAAACATTTTATT  500

seq1  AGGTTCCAAAGCAACTGAGAAGTATGTCAAAGGTCACAGACATGTAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCAAAGCAACTGAGAAGTATGTCAAAGGTCACAGACATGTAGATT  550

seq1  TTAATAAACAAAGATAAGATAGACAACTGGCTTCTCAATAAAAGTCAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAACAAAGATAAGATAGACAACTGGCTTCTCAATAAAAGTCAAAA  600

seq1  ATATACTAAATTATATAACTTCAAGTTCTTTCTCAACAAAATAGCTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTAAATTATATAACTTCAAGTTCTTTCTCAACAAAATAGCTTCTG  650

seq1  TCAATGAAAATCTGTTACATAGGTAGCTGATAAATTGCTAATATCAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAAAATCTGTTACATAGGTAGCTGATAAATTGCTAATATCAAACA  700

seq1  TAAAGGAAATCCTTCATCATTTATAAAAATACATCAAAATAAATTTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAATCCTTCATCATTTATAAAAATACATCAAAATAAATTTAAAA  750

seq1  TGATACTTTACAAAAATCCAAATAATCATAATAATGTAGTAGTCATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTTACAAAAATCCAAATAATCATAATAATGTAGTAGTCATAAAA  800

seq1  TTCAAGAAAAATAGATGAGCTAAACATATAGTATATAAACAAACTGAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGAAAAATAGATGAGCTAAACATATAGTATATAAACAAACTGAACA  850

seq1  TCCCTAATCTAAAATCTCTAAAGGCTCTAAAATCTTGACTTTTCTGAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAATCTAAAATCTCTAAAGGCTCTAAAATCTTGACTTTTCTGAGCA  900

seq1  CCAACTTGCTACAGTGGGAAAACCCGACCTCATGGT-ACAGATTCACAAA  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCAACTTGCTACAGTGGGAAAACCCGACCTCATGGTAACAGATTCACAAA  950

seq1  AGTATCACAGAAGACTACTATAGTGGTTT-GAGTATGTTTGGCACTATTT  998
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  AGTATCACAG-AGACTACTATAGTGGTTTGGAGTATGTTTGGCACTATTT  999

seq1  GGAGGTAAGACCTTGG-TGAAGGAAGTG-TTACTACTGCATAGGCAGCCT  1046
      ||||||| |||||||| |||||| |||| |||||||||||||||||||||
seq2  GGAGGTAGGACCTTGGTTGAAGGGAGTGTTTACTACTGCATAGGCAGCCT  1049

seq1  TTGAAGGCTTCATGTGCTCAATCTCTGCCCAGTGAAAA-GAAGGAGTCTT  1095
      |||||||||||||||| |||||||||  |||||||||| ||||  |||||
seq2  TTGAAGGCTTCATGTGTTCAATCTCTTGCCAGTGAAAAGGAAGAGGTCTT  1099

seq1  CTCCTGGCTGCCTT-CAGATCAAA  1118
      |||||||||||||| |||||||||
seq2  CTCCTGGCTGCCTTCCAGATCAAA  1123