BAC Information

Click to search

BAC

Clone NameB6Ng01-120B09
Chromosome3 (Build37)
Map Location 128,239,750 - 128,240,913
singlet/doubletsinglet
Overlap genenone
Upstream geneLarp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382, EG668828
Downstream geneLOC100043393, EG668831, Pitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120B09.bB6Ng01-120B09.g
ACCDH924123DH924124
length1,1491,139
definitionDH924123|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B09, 5' end.DH924124|Mus musculus domesticus DNA, BAC clone: B6Ng01-120B09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccataaacagagcaggacccttaggacctcagagagaaccttcta
ttaatattgtcctaaatggacatagaattaaaacaacttcttataagtca
tcattatacacacaagttaggaaatatttaaattatcatttaaaaagctt
aatttcttttttgcagtagatatcaattagcatagagacccaggactggt
caaagtacagagaatgagagattgcagaatgatcagtcctgaagcggaca
tgtataaaagcgacacactttctccttctcagattcaacaatcatcacag
aagagcgagtagaaagattttaggagccagaggttgtgaataacagaggg
agggacacagtcttctggacacaaagtggcagttgaacatatggactcac
aatagttgtaacaatgtacatgggcctttgataactaaagcaagaaaaaa
attcttagcactaagggggaggggtgggtacacattcgcagctgaggtag
ggagctttgggcaactgacaggtgttgaaggagagttggctttaaggatg
tggcccatgtcaggtgaagctgttttcaatagaagaccatcaacccaaga
gtataagaacacacacgttgcacttgatgaacttaataaaataaaaaacg
ggaaataaatttgagtctatacaaaggatctctgaggtgttgagggaagg
gttgatatgagacaatcctattataaggaatgctcagaaaaaccaatcga
taaattaaaccaaataaaaagaaaataccaattcagcattttgtcattga
caaacatgacattctgataagtttttcaactcagtgccaagttctaaatg
aattctttgcatctgattcttgacttccaattatttacatatttaacttc
cttatggaaattaaaggtgagtgtcactaggaattattaaagactgaccc
tagtgactaaatatgataccattccaaatgcaagtatttttatttcaagt
gaaacaaattatttaaaaaaatatatttctgacaattagaaaaaaacaga
taacatgtaggaggatgccagaatttaagaaagtttgtagaagatacgat
tgtcaatttctttgtttactaatctgagtcaatttactattttgggatg
gaattctcacctgaggaatactgaatggctgagaagcacctggaaaaatg
tttgcatccttaattattagagaaatgcaaatcaaaacaaccctgagatt
ccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagca
gatgctggtgaggatgtggagaaagaggaacactcctccattgttggtgg
gattgcaagcttgtacaaccactctggaaatcagtctggcggttcctcag
aaaattggacatagaactactaaaggatcctgcaatatatcctgggcata
tatctagaagatgttccaactggtaaaaaggacacatgctccactatgtt
catagcagccttatttataatagccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatttacacaatggag
tactactcagctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatggacctggagggcatcatcctgagtgaggtaacacaatcacaaagga
attcacatgatgtgtactcactgatcagtggatattagcccagaaactta
gaatacccaagatacaagatacaatttgcaaaacacatgaaactccagaa
ggacgaagaccaaagtgtggacactgtgccccttcttagaattgggaaca
aaacacccatggaaggagttacagagacaaagtttggagctgagacaaaa
ggatggactatctagagactgccttacgcagcccatcccacaatcagcct
ccaaaagctgacaccattgcatacactagcaagattttgctgaaaagacc
ctgatatagctgtctcatgtgaggctattcttgggcctagcaaacacaga
agtggatgctcacagtcatctattggatggatcacatggccccatggagg
actagagaaagtactcagactgaggatctgcaccctatagtgacacatat
gtactaccagtacccccgagctgtgactctagctgtatatgtatcaagat
gcttagtcagcattgtgaagaagcaatggcttgcacttttattgctcata
catgacccaggcccagaatatgatggtaggtagggatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_128239750_128240913
seq2: B6Ng01-120B09.b_48_1196

seq1  GAATTCCATAAACAGAGCAGGACCCTTAGGACCTCAGAGAGAACCTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAACAGAGCAGGACCCTTAGGACCTCAGAGAGAACCTTCTA  50

seq1  TTAATATTGTCCTAAATGGACATAGAATTAAAACAACTTCTTATAAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTGTCCTAAATGGACATAGAATTAAAACAACTTCTTATAAGTCA  100

seq1  TCATTATACACACAAGTTAGGAAATATTTAAATTATCATTTAAAAAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATACACACAAGTTAGGAAATATTTAAATTATCATTTAAAAAGCTT  150

seq1  AATTTCTTTTTTGCAGTAGATATCAATTAGCATAGAGACCCAGGACTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTTTTGCAGTAGATATCAATTAGCATAGAGACCCAGGACTGGT  200

seq1  CAAAGTACAGAGAATGAGAGATTGCAGAATGATCAGTCCTGAAGCGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACAGAGAATGAGAGATTGCAGAATGATCAGTCCTGAAGCGGACA  250

seq1  TGTATAAAAGCGACACACTTTCTCCTTCTCAGATTCAACAATCATCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAAAGCGACACACTTTCTCCTTCTCAGATTCAACAATCATCACAG  300

seq1  AAGAGCGAGTAGAAAGATTTTAGGAGCCAGAGGTTGTGAATAACAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGAGTAGAAAGATTTTAGGAGCCAGAGGTTGTGAATAACAGAGGG  350

seq1  AGGGACACAGTCTTCTGGACACAAAGTGGCAGTTGAACATATGGACTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACACAGTCTTCTGGACACAAAGTGGCAGTTGAACATATGGACTCAC  400

seq1  AATAGTTGTAACAATGTACATGGGCCTTTGATAACTAAAGCAAGAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTGTAACAATGTACATGGGCCTTTGATAACTAAAGCAAGAAAAAA  450

seq1  ATTCTTAGCACTAAGGGGGAGGGGTGGGTACACATTCGCAGCTGAGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAGCACTAAGGGGGAGGGGTGGGTACACATTCGCAGCTGAGGTAG  500

seq1  GGAGCTTTGGGCAACTGACAGGTGTTGAAGGAGAGTTGGCTTTAAGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTTGGGCAACTGACAGGTGTTGAAGGAGAGTTGGCTTTAAGGATG  550

seq1  TGGCCCATGTCAGGTGAAGCTGTTTTCAATAGAAGACCATCAACCCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCATGTCAGGTGAAGCTGTTTTCAATAGAAGACCATCAACCCAAGA  600

seq1  GTATAAGAACACACACGTTGCACTTGATGAACTTAATAAAATAAAAAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGAACACACACGTTGCACTTGATGAACTTAATAAAATAAAAAACG  650

seq1  GGAAATAAATTTGAGTCTATACAAAGGATCTCTGAGGTGTTGAGGGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAATTTGAGTCTATACAAAGGATCTCTGAGGTGTTGAGGGAAGG  700

seq1  GTTGATATGAGACAATCCTATTATAAGGAATGCTCAGAAAAACCAATCGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATGAGACAATCCTATTATAAGGAATGCTCAGAAAAACCAATCGA  750

seq1  TAAATTAAACCAAATAAAAAGAAAATACCAATTCAGCATTTTGTCATTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAAACCAAATAAAAAGAAAATACCAATTCAGCATTTTGTCATTGA  800

seq1  CAAACATGACATTCTGATAAGTTTTTCAACTCAGTGCCAAGTTCTAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGACATTCTGATAAGTTTTTCAACTCAGTGCCAAGTTCTAAATG  850

seq1  AATTCTTTGCATCTGATTCTTGACTTCCAATTATTTACATATTTAACTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTGCATCTGATTCTTGACTTCCAATTATTTACATATTTAACTTC  900

seq1  CTTATGGAAATTAAAGGTGAGTGTCACTAGGAATTATTAAAGACTGACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGGAAATTAAAGGTGAGTGTCACTAGGAATTATTAAAGACTGACCC  950

seq1  TAGTGACTAAATATGATACCATTCCAAATGCAAAGTATTTTTATTTCAAA  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TAGTGACTAAATATGATACCATTCCAAATGC-AAGTATTTTTATTTCAA-  998

seq1  GGTGAAACAAAATTATTTAAAAAAATATATTTCTGACAAATTAGAAAAAA  1050
       ||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  -GTGAAAC-AAATTATTTAAAAAAATATATTTCTGAC-AATTAGAAAAAA  1045

seq1  ACAGATAAACATGTAGGAGAGATGCCAGAATTTAAAGAAAAGTTTGTAGA  1100
      |||||| |||||||||||| |||||||||||||||   ||||||||||||
seq2  ACAGAT-AACATGTAGGAG-GATGCCAGAATTTAA--GAAAGTTTGTAGA  1091

seq1  AGGAATACGAATGTCAAATTTTCTTGTTTACT-ATCTGAAGGTCAAATTT  1149
      ||  |||||| |||| |||||  ||||||||| ||||||  |||||  ||
seq2  AG--ATACGATTGTC-AATTTCTTTGTTTACTAATCTGA--GTCAA--TT  1134

seq1  AACTATTTTGTGATG  1164
       ||||||||| ||||
seq2  TACTATTTTGGGATG  1149