BAC Information

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BAC

Clone NameB6Ng01-120I09
Chromosome3 (Build37)
Map Location 119,907,309 - 120,062,733
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120I09.bB6Ng01-120I09.g
ACCDH924445DH924446
length1,0061,082
definitionDH924445|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I09, 5' end.DH924446|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,907,309 - 119,908,215)(120,061,628 - 120,062,733)
sequence
gaattcagttttctaggtcctacatagtggaaggagagaaccaagcaaat
tgtcctttggcttccacatgagtgcacaagtttccccccccccccctaaa
cacacagataaaaatagtaagaactagtttctaaacctcagatcaggact
acaagacaaagtcaacttcaccttttatctctttatactttattctttta
gcaacataaatgaactcagataatacatattatcacacttgctattagtc
ctaggcatgtgatgagagaaagaatggctacaaaacccagaagatggaag
acattcagaaaagccagagtgagaagaactttggcctttgatatagaggg
ttaactacctaacatgatcgtcaagaaggaaagtaaaggacccactattc
atcttagtatctcttttttctttttttattttttattaggtatttatttc
attttcatttccaatgctatcccaaaggtcccccacatgctcccccaccc
actcccccaccctcccactctcacatcttggccctggcattcccctgtac
tgaggcagataaagtttgcaagaccaatgggcctctctttccactgatgg
acgactaggccgtcttctaatacatatgcagctagagacatgaactctgg
gtggtactgggtagttcatattgttgttccacctataaggttgcagatcc
ctttagctccttggttactttctctagttcctccattggggaccctgtga
tccatccaatagctgactgtgagcatccactttctgtgtttgctagggcc
ctggcatagtctcacaagagacagctatatctgggtcctttcagcaaaat
tcttgctagtgttatgcaatgtgtgtcagcgtttggaggctgattatggg
atggatcctccagatatggcaagtctctagatggtccatccttcgcctag
ctctcaaagctattaaaaagaatgaatttatgaaattcctaggcaaatgg
atggac
gaattctacattcactgaagcaagacatacctagttagtgcaggcaaagg
cagatcagtaggtacagtgcttactttataatcagaggacagaaatttga
tatccaagacccacaataaaaccaaggttgtggaggaacagacttcgtgg
ttgtaatccaaacactggatagatggaaacaggaagatagtggaacttga
tggccagctagtctatttggcttagttagttccaggacaataagagactg
tttcaaataaaggtgggtggcatatgaggaatgccatctgagattgtctt
ctggctgctattcataatgcacacatgtgcatatgcactgccctttgtgc
acctgcatacacattagcatattcatgtgtacataccccaaacaaataaa
tatcaattaccatttgtgcaaagcaacttgcttctattttcgctacagct
ctaagatctgggtttgctaatacatctccctttccataaagctataaaaa
ggaaaagaaacttgttttaagtaaacaataaggcaggccggctagctatg
gtttgcagagagactactttcagctttattgccaagagcactgcaagagt
cacaaggacgttttggagataatggttaaattcacagactcagagacatc
tcaccgtggaagagacctgggaggtcatctaattcaaatacttcatttta
tagatgaggagacaaaagcctagggaggtttggtagctaactgattgcag
aatctattctcagacccagtatttccatctcaacctcaaaggttatgttc
ctcaaaatccccgtggtaaaacaaattacctcggagaaccttctgacctt
ctgtgggaaatagagttcgggagtaagacagcgagtgatctgaaaaaaat
tatcatgtgattttgtcactaacattaaaacatgcaggggttctagacac
accgtgttgacaaatttgaactgaaggttccatacaacattcttatgcac
tcttagaattcatatttccatccctacttctctaaggcacactttaaaaa
aaaaaaaacactgtcattgctcccttgcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119907309_119908215
seq2: B6Ng01-120I09.b_46_958

seq1  GAATTCAGTTTTCTAGGTCCTACATAGTGGAAGGAGAGAACCAAGCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTTCTAGGTCCTACATAGTGGAAGGAGAGAACCAAGCAAAT  50

seq1  TGTCCTTTGGCTTCCACATGAGTGCACAAGTTTCCCCCCCCCCCCCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTGGCTTCCACATGAGTGCACAAGTTTCCCCCCCCCCCCCTAAA  100

seq1  CACACAGATAAAAATAGTAAGAACTAGTTTCTAAACCTCAGATCAGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGATAAAAATAGTAAGAACTAGTTTCTAAACCTCAGATCAGGACT  150

seq1  ACAAGACAAAGTCAACTTCACCTTTTATCTCTTTATACTTTATTCTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAAAGTCAACTTCACCTTTTATCTCTTTATACTTTATTCTTTTA  200

seq1  GCAACATAAATGAACTCAGATAATACATATTATCACACTTGCTATTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATAAATGAACTCAGATAATACATATTATCACACTTGCTATTAGTC  250

seq1  CTAGGCATGTGATGAGAGAAAGAATGGCTACAAAACCCAGAAGATGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCATGTGATGAGAGAAAGAATGGCTACAAAACCCAGAAGATGGAAG  300

seq1  ACATTCAGAAAAGCCAGAGTGAGAAGAACTTTGGCCTTTGATATAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCAGAAAAGCCAGAGTGAGAAGAACTTTGGCCTTTGATATAGAGGG  350

seq1  TTAACTACCTAACATGATCGTCAAGAAGGAAAGTAAAGGACCCACTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTACCTAACATGATCGTCAAGAAGGAAAGTAAAGGACCCACTATTC  400

seq1  ATCTTAGTATCTCTTTTTTCTTTTTTTATTTTTTATTAGGTATTTATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGTATCTCTTTTTTCTTTTTTTATTTTTTATTAGGTATTTATTTC  450

seq1  ATTTTCATTTCCAATGCTATCCCAAAGGTCCCCCACATGCTCCCCCACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCATTTCCAATGCTATCCCAAAGGTCCCCCACATGCTCCCCCACCC  500

seq1  ACTCCCCCACCCTCCCACTCTCACATCTTGGCCCTGGCATTCCCCTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCCACCCTCCCACTCTCACATCTTGGCCCTGGCATTCCCCTGTAC  550

seq1  TGAGGCAGATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCACTGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCACTGATGG  600

seq1  ACGACTAGGCCGTCTTCTAATACATATGCAGCTAGAGACATGAACTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACTAGGCCGTCTTCTAATACATATGCAGCTAGAGACATGAACTCTGG  650

seq1  GTGGTACTGGGTAGTTCATATTGTTGTTCCACCTATAAGGTTGCAGATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACTGGGTAGTTCATATTGTTGTTCCACCTATAAGGTTGCAGATCC  700

seq1  CTTTAGCTCCTTGGTTACTTTCTCTAGTTCCTCCATTGGGGACCCTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGCTCCTTGGTTACTTTCTCTAGTTCCTCCATTGGGGACCCTGTGA  750

seq1  TCCATCCAATAGCTGACTGTGAGCATCCAC-TTCTGTGTTTGCTA-GGCC  798
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TCCATCCAATAGCTGACTGTGAGCATCCACTTTCTGTGTTTGCTAGGGCC  800

seq1  CTGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAA-  847
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGGCATAGTCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAAT  850

seq1  TCTTGCTAGTG-TATGCAATG-GTGTCAGCGTTTGGAGGCTGATTATGGG  895
      ||||||||||| ||||||||| ||||||||||||||||||||||||||||
seq2  TCTTGCTAGTGTTATGCAATGTGTGTCAGCGTTTGGAGGCTGATTATGGG  900

seq1  ATGGATCC-CCAG  907
      |||||||| ||||
seq2  ATGGATCCTCCAG  913

seq1: chr3_120061628_120062733
seq2: B6Ng01-120I09.g_66_1147 (reverse)

seq1  ATTTGCAAAAGTGAAGACAAATGACAAGTTGTTTTTTTTTTTTTTTAAAG  50
      ||||||||       ||  |||||||    || |||||||||||||||||
seq2  ATTTGCAA-----GGGAGCAATGACA----GTGTTTTTTTTTTTTTAAAG  41

seq1  TGTGCCATAGGAGAAGCTAGAGAATTGGAAATAATGAATTCTATAGAGTG  100
      |||||| || |||||| ||| ||  ||||||| |||||||||| ||||||
seq2  TGTGCCTTA-GAGAAG-TAGGGA--TGGAAAT-ATGAATTCTA-AGAGTG  85

seq1  CATAAGAAATGTTGTATTGGACCCTTCAGTTCAAATTTGGTCAACACCGG  150
      |||||| ||||||||| |||| |||||||||||||||| ||||||| |||
seq2  CATAAG-AATGTTGTA-TGGAACCTTCAGTTCAAATTT-GTCAACA-CGG  131

seq1  TGTGTCTAGAACCCCTGCATTGTTTTATGTTAGTGAACATAATCCACATG  200
      ||||||||||||||||||||  ||| ||||||||| ||| ||| ||||||
seq2  TGTGTCTAGAACCCCTGCATGTTTTAATGTTAGTG-ACAAAAT-CACATG  179

seq1  ATAATTTTTCTCAGATTCACTCGCTGTCTTACTTCCCGAACTCTATTTCC  250
      ||||||||| ||||| |||||||||||||||| |||||||||||||||||
seq2  ATAATTTTTTTCAGA-TCACTCGCTGTCTTAC-TCCCGAACTCTATTTCC  227

seq1  CACAGAAGGTCAGAAGGTTCTCCGAGGTAATTTGTTTTTACCACGGGGAT  300
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACAGAAGGTCAGAAGGTTCTCCGAGGTAATTTG-TTTTACCACGGGGAT  276

seq1  TTTGAGGAACATAACCTTTGAGGTTGAGATGGAAATACTGGGTCTGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGGAACATAACCTTTGAGGTTGAGATGGAAATACTGGGTCTGAGAA  326

seq1  TAGATTCTGCAATCAGTTAGCTACCAAACCTCCCTAGGCTTTTGTCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTCTGCAATCAGTTAGCTACCAAACCTCCCTAGGCTTTTGTCTCCT  376

seq1  CATCTATAAAATGAAGTATTTGAATTAGATGACCTCCCAGGTCTCTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATAAAATGAAGTATTTGAATTAGATGACCTCCCAGGTCTCTTCCA  426

seq1  CGGTGAGATGTCTCTGAGTCTGTGAATTTAACCATTATCTCCAAAACGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGATGTCTCTGAGTCTGTGAATTTAACCATTATCTCCAAAACGTC  476

seq1  CTTGTGACTCTTGCAGTGCTCTTGGCAATAAAGCTGAAAGTAGTCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACTCTTGCAGTGCTCTTGGCAATAAAGCTGAAAGTAGTCTCTCT  526

seq1  GCAAACCATAGCTAGCCGGCCTGCCTTATTGTTTACTTAAAACAAGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCATAGCTAGCCGGCCTGCCTTATTGTTTACTTAAAACAAGTTTC  576

seq1  TTTTCCTTTTTATAGCTTTATGGAAAGGGAGATGTATTAGCAAACCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTTTATAGCTTTATGGAAAGGGAGATGTATTAGCAAACCCAGA  626

seq1  TCTTAGAGCTGTAGCGAAAATAGAAGCAAGTTGCTTTGCACAAATGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGCTGTAGCGAAAATAGAAGCAAGTTGCTTTGCACAAATGGTAA  676

seq1  TTGATATTTATTTGTTTGGGGTATGTACACATGAATATGCTAATGTGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTTATTTGTTTGGGGTATGTACACATGAATATGCTAATGTGTAT  726

seq1  GCAGGTGCACAAAGGGCAGTGCATATGCACATGTGTGCATTATGAATAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGCACAAAGGGCAGTGCATATGCACATGTGTGCATTATGAATAGC  776

seq1  AGCCAGAAGACAATCTCAGATGGCATTCCTCATATGCCACCCACCTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAAGACAATCTCAGATGGCATTCCTCATATGCCACCCACCTTTAT  826

seq1  TTGAAACAGTCTCTTATTGTCCTGGAACTAACTAAGCCAAATAGACTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAACAGTCTCTTATTGTCCTGGAACTAACTAAGCCAAATAGACTAGC  876

seq1  TGGCCATCAAGTTCCACTATCTTCCTGTTTCCATCTATCCAGTGTTTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATCAAGTTCCACTATCTTCCTGTTTCCATCTATCCAGTGTTTGGA  926

seq1  TTACAACCACGAAGTCTGTTCCTCCACAACCTTGGTTTTATTGTGGGTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACCACGAAGTCTGTTCCTCCACAACCTTGGTTTTATTGTGGGTCT  976

seq1  TGGATATCAAATTTCTGTCCTCTGATTATAAAGTAAGCACTGTACCTACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATCAAATTTCTGTCCTCTGATTATAAAGTAAGCACTGTACCTACT  1026

seq1  GATCTGCCTTTGCCTGCACTAACTAGGTATGTCTTGCTTCAGTGAATGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCCTTTGCCTGCACTAACTAGGTATGTCTTGCTTCAGTGAATGTA  1076

seq1  GAATTC  1106
      ||||||
seq2  GAATTC  1082