BAC Information

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BAC

Clone NameB6Ng01-120I23
Chromosome3 (Build37)
Map Location 134,536,642 - 134,665,145
singlet/doubletdoublet
Overlap geneTacr3, LOC229837
Upstream geneLOC100039168, LOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234
Downstream geneLOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120I23.bB6Ng01-120I23.g
ACCDH924473DH924474
length1,0271,036
definitionDH924473|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I23, 5' end.DH924474|Mus musculus domesticus DNA, BAC clone: B6Ng01-120I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,664,621 - 134,665,145)(134,536,642 - 134,537,677)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtgagatatctgagatttttaaatgcaaacag
tcatagctatacaccttcatcttaggtctgcattagctttatggcaaaca
ttctataagatgtgctttcattttcatttgagtctaggaattctgaaatg
ttctccctaaattctttagtgttctatgggccattcaagaatgctttctt
tagtctacaaatattcctgtcatttctgtaggttttacttctagtttgag
tcatttacgatctgatgagatataggaaataattttaattctgccttatg
accttgtgtgtcatatacttttgagattgctcaatgggctgctgagaaga
atgtgaaatccattgacttaggatagactatcctgtgaatatgttatgtc
tatttatctatgttatagttgagttcttgaattgtttgttgatctctagg
ttgaataacctataagaaaatgagagtggggcaatgaagttagcctctat
tattataagaatgttctgacctcagttgtccattcgggttagttttttga
cagtggaaaccctcaacacttactgtgtttatatttataattattgtatt
ttattcataaattgttacctttatcagtatgtttcagcattctttatctg
actgatttttttttcaagtctactttttcagaatagcttttctagcttat
ttctgacttccattcactttatttattgacttccttcctttggcttagtc
tgcagttgtatctatcaatgagatttggttcttgaagaccacagataatt
ggatttagtttttagaaccagctatccagtctataactctttgttgataa
gtgggggtattttcatttaagggctgttgttgagagatgtttattagttt
ctggtggtttttattttattacttgtt
gaattctttgtttagctctgtacgccccccccccgacataatagggtcta
cctgagtccccactcccactggaaagagccagttagctgcttcaaagctt
tggggctcggtttgagaaacaatctctgtctctccctgggttgtaccatg
agcataaattactgagaaggcatatctgggatcagtacagaaagttaatg
tcttcccttttattaatttaagtgtttttaagtctgagattttatttcag
ctgaaatgctggaggatcagaagcttttgcctcagtatgaagacaccact
gcataatcaacccaatgtgggccattaattataaaattattctagctgac
aaccatacattttaacatcttcacaggcttattctgaatatccatttagt
ttgaatttgccaaatttatgagttcttggaaatgatgcattagcagctct
gatgacatctcattaactgttaagcaaggttttactgtctagggaggact
ggagcagatatctggatcagatactgctaccttcagctgcttgagaacat
tagctgggtgtgatgtcataactgccctgtaagggaaggaagcatctgag
aagtgggcactcagcaacaggaaaactcttagctgtaagacttttgagcc
aattttacaagtcagaggctcaacaaaccatttaacttgcctctcttgct
atccctcaacactgtgttccctctctgttgtgtgtcctttttggtagtca
acatagagtatgtgtttctaaaattgagtagtggtatcatttttttattt
tatttatttattgttttgtttgagatagtttctttttttttaattagatg
ttttctttatttacatttcaaatgttatacccttacctgggtttcactct
gaaacctcctatcccctatcccctccccctactcacaacccaatgggtat
tactttacaagtattatgtattatggtaagcagggactcttccacagaga
ttccacatgtggctaaagcaaccgaatgggggagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_134664621_134665145
seq2: B6Ng01-120I23.b_550_1075 (reverse)

seq1  AACAAGTAATAAAAAAAAAACCACCAG-AACTAATAAACATCTCTCAACA  49
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  AACAAGTAATAAAATAAAAACCACCAGAAACTAATAAACATCTCTCAACA  50

seq1  ACAGCCC-TAAATGAAAATACCCCCCACTTATCAACAAAGAGTTATAGAC  98
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  ACAGCCCTTAAATGAAAATA-CCCCCACTTATCAACAAAGAGTTATAGAC  99

seq1  TGGATAGCTGGTTCTAAAAACTAAATCCAATTATCTGTGGTCTTCAAGAA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAGCTGGTTCTAAAAACTAAATCCAATTATCTGTGGTCTTCAAGAA  149

seq1  CCAAATCTCATTGATAGATACAACTGCAGACTAAGCCAAAGGAAGGAAGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCTCATTGATAGATACAACTGCAGACTAAGCCAAAGGAAGGAAGT  199

seq1  CAATAAATAAAGTGAATGGAAGTCAGAAATAAGCTAGAAAAGCTATTCTG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATAAAGTGAATGGAAGTCAGAAATAAGCTAGAAAAGCTATTCTG  249

seq1  AAAAAGTAGACTTGAAAAAAAAATCAGTCAGATAAAGAATGCTGAAACAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGACTTGAAAAAAAAATCAGTCAGATAAAGAATGCTGAAACAT  299

seq1  ACTGATAAAGGTAACAATTTATGAATAAAATACAATAATTATAAATATAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAAAGGTAACAATTTATGAATAAAATACAATAATTATAAATATAA  349

seq1  ACACAGTAAGTGTTGAGGGTTTCCACTGTCAAAAAACTAACCCGAATGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTAAGTGTTGAGGGTTTCCACTGTCAAAAAACTAACCCGAATGGA  399

seq1  CAACTGAGGTCAGAACATTCTTATAATAATAGAGGCTAACTTCATTGCCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGAGGTCAGAACATTCTTATAATAATAGAGGCTAACTTCATTGCCC  449

seq1  CACTCTCATTTTCTTATAGGTTATTCAACCTAGAGATCAACAAACAATTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCATTTTCTTATAGGTTATTCAACCTAGAGATCAACAAACAATTC  499

seq1  AAGAACTCAACTATAACATAGATAAAT  525
      |||||||||||||||||||||||||||
seq2  AAGAACTCAACTATAACATAGATAAAT  526

seq1: chr3_134536642_134537677
seq2: B6Ng01-120I23.g_68_1103

seq1  GAATTCTTTGTTTAGCTCTGTACGCCCCCCCCCCGACATAATAGGGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACGCCCCCCCCCCGACATAATAGGGTCTA  50

seq1  CCTGAGTCCCCACTCCCACTGGAAAGAGCCAGTTAGCTGCTTCAAAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTCCCCACTCCCACTGGAAAGAGCCAGTTAGCTGCTTCAAAGCTT  100

seq1  TGGGGCTCGGTTTGAGAAACAATCTCTGTCTCTCCCTGGGTTGTACCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTCGGTTTGAGAAACAATCTCTGTCTCTCCCTGGGTTGTACCATG  150

seq1  AGCATAAATTACTGAGAAGGCATATCTGGGATCAGTACAGAAAGTTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAATTACTGAGAAGGCATATCTGGGATCAGTACAGAAAGTTAATG  200

seq1  TCTTCCCTTTTATTAATTTAAGTGTTTTTAAGTCTGAGATTTTATTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTTTTATTAATTTAAGTGTTTTTAAGTCTGAGATTTTATTTCAG  250

seq1  CTGAAATGCTGGAGGATCAGAAGCTTTTGCCTCAGTATGAAGACACCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATGCTGGAGGATCAGAAGCTTTTGCCTCAGTATGAAGACACCACT  300

seq1  GCATAATCAACCCAATGTGGGCCATTAATTATAAAATTATTCTAGCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATCAACCCAATGTGGGCCATTAATTATAAAATTATTCTAGCTGAC  350

seq1  AACCATACATTTTAACATCTTCACAGGCTTATTCTGAATATCCATTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATACATTTTAACATCTTCACAGGCTTATTCTGAATATCCATTTAGT  400

seq1  TTGAATTTGCCAAATTTATGAGTTCTTGGAAATGATGCATTAGCAGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTTGCCAAATTTATGAGTTCTTGGAAATGATGCATTAGCAGCTCT  450

seq1  GATGACATCTCATTAACTGTTAAGCAAGGTTTTACTGTCTAGGGAGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATCTCATTAACTGTTAAGCAAGGTTTTACTGTCTAGGGAGGACT  500

seq1  GGAGCAGATATCTGGATCAGATACTGCTACCTTCAGCTGCTTGAGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGATATCTGGATCAGATACTGCTACCTTCAGCTGCTTGAGAACAT  550

seq1  TAGCTGGGTGTGATGTCATAACTGCCCTGTAAGGGAAGGAAGCATCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGTGTGATGTCATAACTGCCCTGTAAGGGAAGGAAGCATCTGAG  600

seq1  AAGTGGGCACTCAGCAACAGGAAAACTCTTAGCTGTAAGACTTTTGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGCACTCAGCAACAGGAAAACTCTTAGCTGTAAGACTTTTGAGCC  650

seq1  AATTTTACAAGTCAGAGGCTCAACAAACCATTTAACTTGCCTCTCTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTACAAGTCAGAGGCTCAACAAACCATTTAACTTGCCTCTCTTGCT  700

seq1  ATCCCTCAACACTGTGTTCCCTCTCTGTTGTGTGTCCTTTTTGGTAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCAACACTGTGTTCCCTCTCTGTTGTGTGTCCTTTTTGGTAGTCA  750

seq1  ACATAGAGTATGTGTTTCTAAAATTGAGTAGTGGTATCATTTTTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAGTATGTGTTTCTAAAATTGAGTAGTGGTATCATTTTTTTATTT  800

seq1  TATTTATTTATTGTTTTGTTTGAGATAGTTTCTTTTTTTTTAATTAGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTGTTTTGTTTGAGATAGTTTCTTTTTTTTTAATTAGATG  850

seq1  TTTTCTTTATTTACATTTCAAATGTTATACCCTTACCT-GGTTTCACTCT  899
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTTCTTTATTTACATTTCAAATGTTATACCCTTACCTGGGTTTCACTCT  900

seq1  GAAAACCTCCTATCCCCTATCCCCTCCCCCTACTCACCAACCCATTGGTA  949
      | ||||||||||||||||||||||||||||||||||| | || || ||||
seq2  G-AAACCTCCTATCCCCTATCCCCTCCCCCTACTCACAACCCAATGGGTA  949

seq1  TTACTTTTACAAGTATTATGGTATTATGGTAAGCCAGGACTCTT-CACAG  998
      |||| |||||||||||||| ||||||||||||||  |||||||| |||||
seq2  TTAC-TTTACAAGTATTAT-GTATTATGGTAAGCAGGGACTCTTCCACAG  997

seq1  AAGATCCACATTGTGCTAAAGCAACGGAAT-GGGGAGCC  1036
      |   |||||||   ||||||||||| |||| ||||||||
seq2  AGATTCCACATGTGGCTAAAGCAACCGAATGGGGGAGCC  1036