BAC Information

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BAC

Clone NameB6Ng01-120P20
Chromosome3 (Build37)
Map Location 117,344,905 - 117,511,239
singlet/doubletdoublet
Overlap gene4833424O15Rik, EG668759, Snx7
Upstream geneHiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneLOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120P20.bB6Ng01-120P20.g
ACCDH924789DH924790
length1,1151,109
definitionDH924789|Mus musculus domesticus DNA, BAC clone: B6Ng01-120P20, 5' end.DH924790|Mus musculus domesticus DNA, BAC clone: B6Ng01-120P20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,510,127 - 117,511,239)(117,344,905 - 117,346,030)
sequence
gaattctctaatcacacacacacacacacacacacacacacacacacaca
cactttcctttggagttttggtatgaaagaaggtctctcactgtgtagcc
aggacctcaatgtgtaatccagggcagcttggaactggtgtcagtcctct
ggtgtcaggtctcttaagtgcctataagggaaggacgcagcaagatctat
gaactagacgactctacaggtagaaagaaatgtgtattgggagagcaaat
tgccaggctgcctcagagaacagaggacaacaactagtggggaaagcctt
gtgagtgtcatgggagaggtggcatgggcggtagggggagagcagggcag
cctgagggttagcataggactcttgatctgtcacaggttgttaggcttaa
ccaggaactggatgcccttccccaggtcgttgactctagataaggggtag
gtaagggaagtagcagctttcctgggggaacaaaaccagcctttctagta
ctattcgtttatcttgtaagaatcctgtctgagatcagtccaggccttca
tctaagacacatgcttagcagcactgccatttgtgttgcttggccctaac
agtgctgagattgcaggtgtataccaccatggaaggcttctttgggggct
ttgaatagacaaaattaaagttactctcatatcatatttcctataaccta
gtcactgtgcgtagaaggtttttctgaccttgtttacatttctgaaatgg
gttcgattctaagtttaccagatttaatgattctatttcattaagcatga
attttgtttagactactttagaaaaggtaaaatgtttacaatttttcata
taaccctgatattgtaacaactcaaaacaaatgattatatcagaggttat
aatcaacaatagatgcagtttttatttacttgtgaattgtaatgatatga
gcatttattttatagaacccgtgtttttgattttgtacaatgtactagca
ctgtgtatatgtgttgttattctagaagaaattaaacaggcattcaagga
gtataatagaaagtgaaaaaccattgggtagtggcccagttaccagcact
ccttcagaaactttt
gaattctatgtaaactggactcacttacagtctatccatgctcagaagta
cccaggctggattacaatgttgttttccatgtctttcagtccctaattag
tttcgacatgctatcctccatcactgtgtgcttggccctctcagtgatat
acctagtcctatagtgacctacagtcatggacatttcactctaaccacct
gcacacccagagctctgaggcctctctacaaacttcagaacagttttgga
acatgttttagtagcagatgaattctatgtaaaaattcttttattttgtt
tcctaaatgctataatttacaaacataagtttcaaagcaagggaaggctc
tatcgtttacacagacacccctaaactaagccaaatgtagttttattttt
ttgtttgtttgcttcttgactgggagatggttacttggttgcttgaggag
acatgtcacaccaggttgctgtctgactaggcgggagttctctcactctt
ccctggagtatctcttaatcactgtcttttatccttctcgttaaagtcac
agatcacggtctctgtttttttaatcattttctcagtcattactagacat
ttctaaaagacctcataacatatagctttgatttccctctgatttatacc
aatttacagcaatcacacctcattagaatagaagtcataaaattagggct
ggtgagatgctcaacagataaaagttctgccaccatgattagtgaactca
attcaatccctagaacccacctttcacaggacctgagcaactcctgaaat
ctggccacagtacatgaacacacatgcatgcacacatgcaaacacacaca
cacacacacacaaaatttaaaataaaaccacatgaataaatgggtacttg
gaaacatggaaacaaccatcaaatctctatgcattaatagtttaacagca
ctattgagcacttaggaggtcagaggtgtatataataggcaagaactcag
tctttgatctgaggaaacagttacaggtgcagatgggagttggggggtga
actcgatgtacaacagccaattacttacagcttaccaaaggaccattcat
gggaacgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117510127_117511239
seq2: B6Ng01-120P20.b_51_1165 (reverse)

seq1  AAAAGTTTCTGGAGGAGTGCTGGAAACT-GGCCACTACCC-ATGGTTTTT  48
      ||||||||||| ||||||||||| |||| ||||||||||| |||||||||
seq2  AAAAGTTTCTGAAGGAGTGCTGGTAACTGGGCCACTACCCAATGGTTTTT  50

seq1  CACTTTCTATTTTTACT-CTTGAATGCTGTTTTAATTTCTTCTAGAATTA  97
      ||||||||| || |||| |||||||||   ||||||||||||||||| ||
seq2  CACTTTCTA-TTATACTCCTTGAATGCCTGTTTAATTTCTTCTAGAA-TA  98

seq1  ACAACAACATATACACAGTGCTAGTACATTTGTACATAATC-AAAACACG  146
      ||||| |||||||||||||||||||||| ||||||| |||| ||||||||
seq2  ACAAC-ACATATACACAGTGCTAGTACA-TTGTACAAAATCAAAAACACG  146

seq1  GGTTCTATAAAATAAATGCTCATATCATTACAATTCACAAGTAGAT-AAA  195
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  GGTTCTATAAAATAAATGCTCATATCATTACAATTCACAAGTAAATAAAA  196

seq1  ACTGCATCTATTTGTTGATTATAACCTCTGATATAATCATTTGTTTTGAG  245
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCTA-TTGTTGATTATAACCTCTGATATAATCATTTGTTTTGAG  245

seq1  TTGTTACAATATCAGGGTTATATG-AAAATTGTAAACATTTTACCTTTTC  294
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTTACAATATCAGGGTTATATGAAAAATTGTAAACATTTTACCTTTTC  295

seq1  T-AAGTAGTCTGAACAATATTCATGCTTAATGAAATAGAATCATTAAATC  343
      | ||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  TAAAGTAGTCTAAACAAAATTCATGCTTAATGAAATAGAATCATTAAATC  345

seq1  TGGTAAACTTAGAATCGAACCCATTTCAGAAATGTAAACAAGGTCAGAAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAACTTAGAATCGAACCCATTTCAGAAATGTAAACAAGGTCAGAAA  395

seq1  AACCTTCTACGCACAGTGACTAGGTTATAGGAAATATGATATGAGAGTAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTACGCACAGTGACTAGGTTATAGGAAATATGATATGAGAGTAA  445

seq1  CTTTAATTTTGTCTATTCAAAGCCCCCAAAGAAGCCTTCCATGGTGGTAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTTTGTCTATTCAAAGCCCCCAAAGAAGCCTTCCATGGTGGTAT  495

seq1  ACACCTGCAATCTCAGCACTGTTAGGGCCAAGCAACACAAATGGCAGTGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGCAATCTCAGCACTGTTAGGGCCAAGCAACACAAATGGCAGTGC  545

seq1  TGCTAAGCATGTGTCTTAGATGAAGGCCTGGACTGATCTCAGACAGGATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGCATGTGTCTTAGATGAAGGCCTGGACTGATCTCAGACAGGATT  595

seq1  CTTACAAGATAAACGAATAGTACTAGAAAGGCTGGTTTTGTTCCCCCAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAGATAAACGAATAGTACTAGAAAGGCTGGTTTTGTTCCCCCAGG  645

seq1  AAAGCTGCTACTTCCCTTACCTACCCCTTATCTAGAGTCAACGACCTGGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGCTACTTCCCTTACCTACCCCTTATCTAGAGTCAACGACCTGGG  695

seq1  GAAGGGCATCCAGTTCCTGGTTAAGCCTAACAACCTGTGACAGATCAAGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCATCCAGTTCCTGGTTAAGCCTAACAACCTGTGACAGATCAAGA  745

seq1  GTCCTATGCTAACCCTCAGGCTGCCCTGCTCTCCCCCTACCGCCCATGCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATGCTAACCCTCAGGCTGCCCTGCTCTCCCCCTACCGCCCATGCC  795

seq1  ACCTCTCCCATGACACTCACAAGGCTTTCCCCACTAGTTGTTGTCCTCTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTCCCATGACACTCACAAGGCTTTCCCCACTAGTTGTTGTCCTCTG  845

seq1  TTCTCTGAGGCAGCCTGGCAATTTGCTCTCCCAATACACATTTCTTTCTA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAGGCAGCCTGGCAATTTGCTCTCCCAATACACATTTCTTTCTA  895

seq1  CCTGTAGAGTCGTCTAGTTCATAGATCTTGCTGCGTCCTTCCCTTATAGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAGAGTCGTCTAGTTCATAGATCTTGCTGCGTCCTTCCCTTATAGG  945

seq1  CACTTAAGAGACCTGACACCAGAGGACTGACACCAGTTCCAAGCTGCCCT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAGAGACCTGACACCAGAGGACTGACACCAGTTCCAAGCTGCCCT  995

seq1  GGATTACACATTGAGGTCCTGGCTACACAGTGAGAGACCTTCTTTCATAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACACATTGAGGTCCTGGCTACACAGTGAGAGACCTTCTTTCATAC  1045

seq1  CAAAACTCCAAAGGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTCCAAAGGAAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  1095

seq1  TGTGTGTGATTAGAGAATTC  1113
      ||||||||||||||||||||
seq2  TGTGTGTGATTAGAGAATTC  1115

seq1: chr3_117344905_117346030
seq2: B6Ng01-120P20.g_68_1176

seq1  GAATTCTATGTAAACTGGACTCACTTACAGTCTATCCATGCTCAGAAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTAAACTGGACTCACTTACAGTCTATCCATGCTCAGAAGTA  50

seq1  CCCAGGCTGGATTACAATGTTGTTTTCCATGTCTTTCAGTCCCTAATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGCTGGATTACAATGTTGTTTTCCATGTCTTTCAGTCCCTAATTAG  100

seq1  TTTCGACATGCTATCCTCCATCACTGTGTGCTTGGCCCTCTCAGTGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGACATGCTATCCTCCATCACTGTGTGCTTGGCCCTCTCAGTGATAT  150

seq1  ACCTAGTCCTATAGTGACCTACAGTCATGGACATTTCACTCTAACCACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTCCTATAGTGACCTACAGTCATGGACATTTCACTCTAACCACCT  200

seq1  GCACACCCAGAGCTCTGAGGCCTCTCTACAAACTTCAGAACAGTTTTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCCAGAGCTCTGAGGCCTCTCTACAAACTTCAGAACAGTTTTGGA  250

seq1  ACATGTTTTAGTAGCAGATGAATTCTATGTAAAAATTCTTTTATTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTTAGTAGCAGATGAATTCTATGTAAAAATTCTTTTATTTTGTT  300

seq1  TCCTAAATGCTATAATTTACAAACATAAGTTTCAAAGCAAGGGAAGGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATGCTATAATTTACAAACATAAGTTTCAAAGCAAGGGAAGGCTC  350

seq1  TATCGTTTACACAGACACCCCTAAACTAAGCCAAATGTAGTTTTATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGTTTACACAGACACCCCTAAACTAAGCCAAATGTAGTTTTATTTTT  400

seq1  TTGTTTGTTTGCTTCTTGACTGGGAGATGGTTACTTGGTTGCTTGAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGCTTCTTGACTGGGAGATGGTTACTTGGTTGCTTGAGGAG  450

seq1  ACATGTCACACCAGGTTGCTGTCTGACTAGGCGGGAGTTCTCTCACTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCACACCAGGTTGCTGTCTGACTAGGCGGGAGTTCTCTCACTCTT  500

seq1  CCCTGGAGTATCTCTTAATCACTGTCTTTTATCCTTCTCGTTAAAGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGTATCTCTTAATCACTGTCTTTTATCCTTCTCGTTAAAGTCAC  550

seq1  AGATCACGGTCTCTGTTTTTTTAATCATTTTCTCAGTCATTACTAGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACGGTCTCTGTTTTTTTAATCATTTTCTCAGTCATTACTAGACAT  600

seq1  TTCTAAAAGACCTCATAACATATAGCTTTGATTTCCCTCTGATTTATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAAGACCTCATAACATATAGCTTTGATTTCCCTCTGATTTATACC  650

seq1  AATTTACAGCAATCACACCTCATTAGAATAGAAGTCATAAAATTAGGGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACAGCAATCACACCTCATTAGAATAGAAGTCATAAAATTAGGGCT  700

seq1  GGTGAGATGCTCAACAGATAAAAGTTCTGCCACCATGATTAGTGAACTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATGCTCAACAGATAAAAGTTCTGCCACCATGATTAGTGAACTCA  750

seq1  ATTCAATCCCTAGAACCCACCTTTCACAGGACCTGAGCAACTCCTGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATCCCTAGAACCCACCTTTCACAGGACCTGAGCAACTCCTGAAAT  800

seq1  CTGGCCACAGTACATGAACACACATGCATGCACACATGCAAACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCACAGTACATGAACACACATGCATGCACACATGCAAACACACACA  850

seq1  CACACACACACAAAATTAAAAATAAAACCACATGAATAAATGGGTAACTT  900
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  CACACACACACAAAATTTAAAATAAAACCACATGAATAAATGGGT-ACTT  899

seq1  GGAAACATTGGAAACAACCATCAAATCTCTTATGCATTAATTAGTTTAAC  950
      ||||||| ||||||||||||||||||||| |||||||||| |||||||||
seq2  GGAAACA-TGGAAACAACCATCAAATCTC-TATGCATTAA-TAGTTTAAC  946

seq1  AAGCAACTATTGAGCACTTAGGAGGTCAGAGGTGGTATAT-ATAGGCAAG  999
       ||| |||||||||||||||||||||||||||| |||||| |||||||||
seq2  -AGC-ACTATTGAGCACTTAGGAGGTCAGAGGT-GTATATAATAGGCAAG  993

seq1  AAACTCAGTCTTTGATCTGAGGGAGACCAGTACCAGGTGCAGATGGGAGT  1049
       |||||||||||||||||||||   | ||||  |||||||||||||||||
seq2  -AACTCAGTCTTTGATCTGAGG--AAACAGTTACAGGTGCAGATGGGAGT  1040

seq1  T-GGGGGTGAACTCCCAATGTAACCAACAG-CAAATACTTTCACAGCCTT  1097
      | |||||||||||  | |||||  |||||| ||| |||||  |||||   
seq2  TGGGGGGTGAACT--CGATGTA--CAACAGCCAATTACTT--ACAGC---  1081

seq1  TTACCAAAGGGCACATTCATGGGAACGTT  1126
      |||||||||| | ||||||||||||||||
seq2  TTACCAAAGGAC-CATTCATGGGAACGTT  1109