BAC Information

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BAC

Clone NameB6Ng01-121A13
Chromosome3 (Build37)13 (Build37)
Map Location 49,720,250 - 49,721,46014,706,315 - 14,706,831
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
Downstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121A13.bB6Ng01-121A13.g
ACCDH924823DH924824
length1,217973
definitionDH924823|Mus musculus domesticus DNA, BAC clone: B6Ng01-121A13, 5' end.DH924824|Mus musculus domesticus DNA, BAC clone: B6Ng01-121A13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(49,720,250 - 49,721,460)(14,706,315 - 14,706,831)
sequence
gaattcattatcttaaatttatatatgtatgcataaataggaaagaaaat
ctggtctgttagtaaaaattatatcttgtctttcttcttttatgctaaat
gtgttcataaacataaaacaacttattttattttataatggcaagtgaat
cattttttgctttcactcttttgtttaaatgaagaaagagaacattttaa
aatacctatctgttacaaactagaatatttctttctttctttattggtcc
taggtacaaataacagatgctcagttgagatgacctttgcagggaaaact
cagtaattccttttttatttacagggctatcacagtgtttcagtttcccc
tcttcaggctcatggtgcttagttctctctaaattctgctagagcagcac
acttttttttttcatttttcaaaccaaacctgggtaatgatgcaattgga
gaagaaggttaccttctgtggtagtttgaatacgcttggcccagggagtg
gcattatttggacgtatggccttgttgggggaagttggtcactgtgggcc
tgggcattaagactctcctcctaattatgtgggagccaatcttctcctag
aggccttcagatgaagttgtagaactctcagctcctcctgcaccatgcct
gccggtctgctgccatgctcctaccttgatgataattgattgaacctttg
aatctggaagccaaccccagttaaatgttgtccttataagagttgctttg
gtcatggtgtctgttcagagcagtaaaaccctaagacaccctccaaaata
catttgtttggtttgtttttctctccaattcgcctaaaagtcaatttgct
ctccaaagaggaaaatgttgtctttctttcatatatgaaattatcttatt
tgagaagaggacaagattaaaatatcatgagtaccatcctgaaagacatg
ttatcagatatcaaaaactactagtattacttctttgctctcactgaatg
aatcatctccacacacggttatcacacagtgttgaaattaatttttaaag
acatgctactgcctttctgggagctcagccttcacttctaagccttagct
tggcaggattggacacaaccaaccgccaacccaaggaagggcatgggctg
ctgttcttcactctaccaagttcccttttgacttttcttttgttcttcct
ggctagcttcggcaaag
gaattccaggacagccagggctatacagagaaaccctttctcgaaaaaca
aaacaaataaacaaaacaaaacaaaaaagaaatgtaaataaattaaaaaa
acaataaaaagtgataaaaaatgaagatactagaaaaaaaagtctttgat
atctaaatttatccttaatcttcagatgtgattacaatcctgacttcacc
tgatttatcaagcacagtatttatctgtgtcaacaatggtttgactgcaa
acaggagtgctcagaaaggttgctgtataatgtcttaacaaaaactatcc
tgcagagcatggtaaattgatctgaaatcagtaattctatatacatactg
aactttcatttttaaaatgaagcatgtacaaacactcagcctttcttttt
ctttctttttttttttttctttccattttttattaggtatttagctcatt
tacatttccaatgctataccaaaagtcccccatacccacccacccccact
cccctacccgcccactccccctttttggccctggcgttcccctgttctgg
ggcatataaagtttgtgtgtccaatgggcctctctttccagtgatggccg
actaggccatcttttgatacatatgcagctagagtcaagagctccggggt
actggttagttcataatgttgatccacctatagggttgcagatcccttta
gctccttgggtactttctctagctcctccattgggagccctgtgatccat
ccattagctgactgtgggcatccacttctgtgtttgctaggccccggcat
agtctcacaagagacagctacatctgggtcctttcgataaaatcttgcta
gtgtatgcaatggtgtcagcgtttggatgctgattatggggtgatccctg
gataaggcagtctctactggtccaccctttatctcagctccaaactttgt
ctctgtactcttccaagggtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_49720250_49721460
seq2: B6Ng01-121A13.b_48_1264

seq1  GAATTCATTATCTTAAATTTATATATGTATGCATAAATAGGAAAGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCTTAAATTTATATATGTATGCATAAATAGGAAAGAAAAT  50

seq1  CTGGTCTGTTAGTAAAAATTATATCTTGTCTTTCTTCTTTTATGCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGTTAGTAAAAATTATATCTTGTCTTTCTTCTTTTATGCTAAAT  100

seq1  GTGTTCATAAACATAAAACAACTTATTTTATTTTATAATGGCAAGTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCATAAACATAAAACAACTTATTTTATTTTATAATGGCAAGTGAAT  150

seq1  CATTTTTTGCTTTCACTCTTTTGTTTAAATGAAGAAAGAGAACATTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTGCTTTCACTCTTTTGTTTAAATGAAGAAAGAGAACATTTTAA  200

seq1  AATACCTATCTGTTACAAACTAGAATATTTCTTTCTTTCTTTATTGGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTATCTGTTACAAACTAGAATATTTCTTTCTTTCTTTATTGGTCC  250

seq1  TAGGTACAAATAACAGATGCTCAGTTGAGATGACCTTTGCAGGGAAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTACAAATAACAGATGCTCAGTTGAGATGACCTTTGCAGGGAAAACT  300

seq1  CAGTAATTCCTTTTTTATTTACAGGGCTATCACAGTGTTTCAGTTTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATTCCTTTTTTATTTACAGGGCTATCACAGTGTTTCAGTTTCCCC  350

seq1  TCTTCAGGCTCATGGTGCTTAGTTCTCTCTAAATTCTGCTAGAGCAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGCTCATGGTGCTTAGTTCTCTCTAAATTCTGCTAGAGCAGCAC  400

seq1  ACTTTTTTTTTTCATTTTTCAAACCAAACCTGGGTAATGATGCAATTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTTTCATTTTTCAAACCAAACCTGGGTAATGATGCAATTGGA  450

seq1  GAAGAAGGTTACCTTCTGTGGTAGTTTGAATACGCTTGGCCCAGGGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGTTACCTTCTGTGGTAGTTTGAATACGCTTGGCCCAGGGAGTG  500

seq1  GCATTATTTGGACGTATGGCCTTGTTGGGGGAAGTTGGTCACTGTGGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATTTGGACGTATGGCCTTGTTGGGGGAAGTTGGTCACTGTGGGCC  550

seq1  TGGGCATTAAGACTCTCCTCCTAATTATGTGGGAGCCAATCTTCTCCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTAAGACTCTCCTCCTAATTATGTGGGAGCCAATCTTCTCCTAG  600

seq1  AGGCCTTCAGATGAAGTTGTAGAACTCTCAGCTCCTCCTGCACCATGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTCAGATGAAGTTGTAGAACTCTCAGCTCCTCCTGCACCATGCCT  650

seq1  GCCGGTCTGCTGCCATGCTCCTACCTTGATGATAATTGATTGAACCTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTCTGCTGCCATGCTCCTACCTTGATGATAATTGATTGAACCTTTG  700

seq1  AATCTGGAAGCCAACCCCAGTTAAATGTTGTCCTTATAAGAGTTGCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGAAGCCAACCCCAGTTAAATGTTGTCCTTATAAGAGTTGCTTTG  750

seq1  GTCATGGTGTCTGTTCAGAGCAGTAAAACCCTAAGACACCCTCCAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGGTGTCTGTTCAGAGCAGTAAAACCCTAAGACACCCTCCAAAATA  800

seq1  CATTTGTTTGGTTTGTTTTTCTCTCCAATTCGCCTAAAAGTCAATTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTTTGGTTTGTTTTTCTCTCCAATTCGCCTAAAAGTCAATTTGCT  850

seq1  CTCCAAAGAGGAAAATGTTGTCTTTCTTTCATATATGAAATTATCTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGAGGAAAATGTTGTCTTTCTTTCATATATGAAATTATCTTATT  900

seq1  TGAGAAGAGGACAAGATTAAAATATCATGAGTACCATCCTGAAAGACATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGAGGACAAGATTAAAATATCATGAGTACCATCCTGAAAGACATG  950

seq1  TTATCAGATATCAAAAACTACTAGTATTACTTCTTTGCTCTCACTGAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGATATCAAAAACTACTAGTATTACTTCTTTGCTCTCACTGAATG  1000

seq1  AATCATCTCCACACACGGTTATCACACAGTTGTTGAATATAATTTTTAAA  1050
      ||||||||||||||||||||||||||||| |||||||  |||||||||||
seq2  AATCATCTCCACACACGGTTATCACACAG-TGTTGAAATTAATTTTTAAA  1049

seq1  GACATGCTACTGCCTTTCTGGGAGCTCAGCCTTCAC-TCTAAG-CTTAGC  1098
      |||||||||||||||||||||||||||||||||||| |||||| ||||||
seq2  GACATGCTACTGCCTTTCTGGGAGCTCAGCCTTCACTTCTAAGCCTTAGC  1099

seq1  -TGGCA-GATTGGACACAACCAACCGCCAACCC-AGGAAAGCCATGAGCT  1145
       ||||| |||||||||||||||||||||||||| ||||| | |||| |||
seq2  TTGGCAGGATTGGACACAACCAACCGCCAACCCAAGGAAGGGCATGGGCT  1149

seq1  GCTG-TCTTCACTCTACC-AGTTCCCTTTTGACTTTTCTTTTGTTCTTCC  1193
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTGTTCTTCACTCTACCAAGTTCCCTTTTGACTTTTCTTTTGTTCTTCC  1199

seq1  TGGCTAGCTTCGCCAAAG  1211
      |||||||||||| |||||
seq2  TGGCTAGCTTCGGCAAAG  1217

seq1: chr13_14706315_14706831
seq2: B6Ng01-121A13.g_464_976

seq1  TTTTCTTTCTTTTTTTTTTTTTTTCTTTCCATTTTTTTATTAGGTATTTA  50
      |||||||||  |||||||||||||||||||| ||||||||||||||||||
seq2  TTTTCTTTC--TTTTTTTTTTTTTCTTTCCA-TTTTTTATTAGGTATTTA  47

seq1  GCTCATTCACACTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCAC  100
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCAC  97

seq1  CCCCACTCCCCTACCCGCCCACTCCCCCTCCTTGGCCCTGGCGTTCCCCT  150
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  CCCCACTCCCCTACCCGCCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCT  147

seq1  GTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGGGGCATATAAAGTTTGTGTGTCCAATGGGCCTCTCTTTCCAGTG  197

seq1  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCT  247

seq1  CCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGAT  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCGGGGTACTGGTTAGTTCATAATGTTGATCCACCTATAGGGTTGCAGAT  297

seq1  CCCTTTAGCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGT  350
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGT  347

seq1  GATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCC  400
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GATCCATCCATTAGCTGACTGTGGGCATCCACTTCTGTGTTTGCTAGGCC  397

seq1  CTGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAAT  450
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCATAGTCTCACAAGAGACAGCTACATCTGGGTCCTTTCGATAAAAT  447

seq1  CTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTGCTAGTGTATGCAATGGTGTCAGCGTTTGGATGCTGATTATGGGGT-  496

seq1  GATCCCTGGATAAGGCA  517
      |||||||||||||||||
seq2  GATCCCTGGATAAGGCA  513