BAC Information

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BAC

Clone NameB6Ng01-121C19
ChromosomeX (Build37)3 (Build37)
Map Location 29,374,601 - 29,375,82941,059,224 - 41,059,737
singlet/doubletsingletsinglet
Overlap geneLOC100042135
Upstream geneLOC100039127, EG664944, LOC100039423, LOC100039145, LOC664951, LOC100042071, LOC664958, LOC664964, LOC100042087, LOC100039171, LOC100042103, LOC100042109, LOC100042115, LOC100042122
Downstream geneLOC100042144, LOC664982, LOC100039212, EG664989, LOC664996, LOC100039467, LOC100039481, LOC100039224, LOC100039500, LOC100040448, LOC100040458, LOC100040467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121C19.bB6Ng01-121C19.g
ACCDH924924DH924925
length1,202941
definitionDH924924|Mus musculus domesticus DNA, BAC clone: B6Ng01-121C19, 5' end.DH924925|Mus musculus domesticus DNA, BAC clone: B6Ng01-121C19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(29,374,601 - 29,375,829)(41,059,224 - 41,059,737)
sequence
gaattcacccttttggcatttgttcatcttcccttataccctaatctctc
agccacaaccaaatctctcatctaccagcacagggttctcctgggaagac
tgggggacaagcatctttaaacttacagcattcttgtggtctgaattcca
aatttttgcacacttatatagcaagcttggcagctgtacagcaggtactt
tattgtaaatgacctagtcataagccaggtatcttggccctgagaacaaa
aaattattaatctgagcaagctctcagataggaaaatggaaactctacta
ccatattgatggactttgctatgatttttactactctgtccactgcatgt
atgtatgaacgataaagtctgcatcttaacactagaagagaggatattaa
aaacaaagagaatttattgaactttctagaggctattcgacttatcctat
gaactgtggtcctccactgccaggttgctgacctgactccccaacaaaca
ccccaaacacctatttatattctgatgacataacccaacctggtgccacc
tgagactccattgtaaagaagaaatatacagctcacatccacaggttgat
ggaggacatcagaggcaaagatcattctcacacaaactactggaaagatt
gttggtaattgaccttcaccaggcatctggggtccatgcaactttctgag
ttactcagattaaagtacatttcacttaaactggacatcctggttcaaca
gggagcccttacctaggaagggttccaaatatgaaataaacacctcagca
actttagggaaactgacttcagcaagttccagcctgccagggggtggaaa
actttactagctaggtttgcaggtaccttttgttgaggccggccagcagc
tcacatgtatgggttcagcaatgcctctacaagaattatgccaattgtca
caccacaatttgtgactctagctatatggagctagaggtcaccctcctca
tctttatgtctctatggctgatgatcagaccaaagcacaatatatactgg
aatgctttagaatgaaattagtagctgcatctgcacactcttgggggcag
ggatgcaacctgtaaggtcagctgaaggtgtgatgactgctgaaaacaat
tcgacagattaggcaacggtaccaggttttttgtggaagccaggtacttt
at
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggatagacaaagatcctttcctaatctgttggtggcct
ttttgtctttttgaaggtgtctttttccttgcagaacctttgcagtttta
tgaggtcccatttgtcaattctcaatcttacagcacaatccattgctgtt
tttctcagtaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtataaggagataggaatcgatcaattcac
attcttctacatgataaccaccagttgtgccagcaccctttgttgagaat
gctgtcttttctccactggatggttttagctcccttgttgaagatcaagt
gacaataggtttgtgggttcatttctgggtcttcaattctattccattgg
tctacttgactgtcactataccagtaccatgcagtttttatcacaattgc
tctgtagtgcagctttaagtcaggcatggtgattccaccagaggttcttt
tatccttgagaaaagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatgggggttgcattgaatctgtagattgcttttggcaagatagccactt
ttacaatgttgatcctgccagtcccagagcatgggagatcttcccacttc
tgagatcttcttttaatttctttcttcagagacttgaagtcttatcatac
agatctttcactccttatttagagtcacgcaaggtatttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_29374601_29375829
seq2: B6Ng01-121C19.b_49_1250

seq1  GAATTCACCCTTTTGGCATTTGTTCATCTTCCCTTATACCCTAATCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTTTTGGCATTTGTTCATCTTCCCTTATACCCTAATCTCTC  50

seq1  AGCCACAACCAAATCTCTCATCTACCAGCACAGGGTTCTCCTGGGAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAACCAAATCTCTCATCTACCAGCACAGGGTTCTCCTGGGAAGAC  100

seq1  TGGGGGACAAGCATCTTTAAACTTACAGCATTCTTGTGGTCTGAATTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACAAGCATCTTTAAACTTACAGCATTCTTGTGGTCTGAATTCCA  150

seq1  AATTTTTGCACACTTATATAGCAAGCTTGGCAGCTGTACAGCAGGTACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGCACACTTATATAGCAAGCTTGGCAGCTGTACAGCAGGTACTT  200

seq1  TATTGTAAATGACCTAGTCATAAGCCAGGTATCTTGGCCCTGAGAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTAAATGACCTAGTCATAAGCCAGGTATCTTGGCCCTGAGAACAAA  250

seq1  AAATTATTAATCTGAGCAAGCTCTCAGATAGGAAAATGGAAACTCTACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATTAATCTGAGCAAGCTCTCAGATAGGAAAATGGAAACTCTACTA  300

seq1  CCATATTGATGGACTTTGCTATGATTTTTACTACTCTGTCCACTGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTGATGGACTTTGCTATGATTTTTACTACTCTGTCCACTGCATGT  350

seq1  ATGTATGAACGATAAAGTCTGCATCTTAACACTAGAAGAGAGGATATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAACGATAAAGTCTGCATCTTAACACTAGAAGAGAGGATATTAA  400

seq1  AAACAAAGAGAATTTATTGAACTTTCTAGAGGCTATTCGACTTATCCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGAGAATTTATTGAACTTTCTAGAGGCTATTCGACTTATCCTAT  450

seq1  GAACTGTGGTCCTCCACTGCCAGGTTGCTGACCTGACTCCCCAACAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGGTCCTCCACTGCCAGGTTGCTGACCTGACTCCCCAACAAACA  500

seq1  CCCCAAACACTTATTTATATTCTGATGACATAACCCAACCTGGTGCCACC  550
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACACCTATTTATATTCTGATGACATAACCCAACCTGGTGCCACC  550

seq1  TGAGACTCCATTGTAAAGAAGAAATATACAGCTCACATCCACAGGTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTCCATTGTAAAGAAGAAATATACAGCTCACATCCACAGGTTGAT  600

seq1  GGAGGACATCAGAGGCAAAGATCATTCTCACACAAACTACTGGCAAGATT  650
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGAGGACATCAGAGGCAAAGATCATTCTCACACAAACTACTGGAAAGATT  650

seq1  GTTGGTAATTGACCTTCACCAGGCATCTGGGGTCCATGCAACTTTCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAATTGACCTTCACCAGGCATCTGGGGTCCATGCAACTTTCTGAG  700

seq1  TTACTCAGATTAAAGTACATTTCACTTAAACTGGACATCCTGGTTCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAGATTAAAGTACATTTCACTTAAACTGGACATCCTGGTTCAACA  750

seq1  GGGAGCCCTTACCTAGGAAGGGTTCCAAATATGAAATAAACACCTCAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCCTTACCTAGGAAGGGTTCCAAATATGAAATAAACACCTCAGCA  800

seq1  ACTTTAGGGAAACTGACTTCAGCAAGTTCCAGCCTGCCAGGGGGTGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGGGAAACTGACTTCAGCAAGTTCCAGCCTGCCAGGGGGTGGAAA  850

seq1  ACTTTACTTGCTAGGTTTGCAGGTACCTTTTGTTGAGGCCGGCCAGCAGC  900
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTACTAGCTAGGTTTGCAGGTACCTTTTGTTGAGGCCGGCCAGCAGC  900

seq1  TCACATGTATGGGTTCAGCAATGCCTCTACAAGAATTATGCCAATTGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTATGGGTTCAGCAATGCCTCTACAAGAATTATGCCAATTGTCA  950

seq1  CACCACAATTTGTGACTCTTAGGCTATATTGGGAGCTAGAGGTCACCCTC  1000
      |||||||||||||||||||   |||||||  |||||||||||||||||||
seq2  CACCACAATTTGTGACTCT--AGCTATAT--GGAGCTAGAGGTCACCCTC  996

seq1  CTCATCTTTATTGTCTCTATGGCCTGATGAATCAGACCAAAAGCCACAAT  1050
      |||||||||| ||||||||||| |||||| |||||||||||   ||||||
seq2  CTCATCTTTA-TGTCTCTATGG-CTGATG-ATCAGACCAAA--GCACAAT  1041

seq1  ATATACTGGAATGCTTTTAGAATGAAAATTAGTAGCTGCCATCTGCACAC  1100
      |||||||||||||| ||||||||| ||||||||||||| |||||||||||
seq2  ATATACTGGAATGC-TTTAGAATG-AAATTAGTAGCTG-CATCTGCACAC  1088

seq1  TCTTGGGGGCAGGGATGCACACCTGGTACAGTCAGGCTGAAGG-GTGTTG  1149
      ||||||||||||||||||| |||| |||  |||| |||||||| ||| ||
seq2  TCTTGGGGGCAGGGATGCA-ACCT-GTAAGGTCA-GCTGAAGGTGTGATG  1135

seq1  ATTGACCTGCTTGAAAAACAAAATCCAGACAGTGAAAGGCAACAGTACAC  1199
      |     |||| ||||||   || || | | | |   ||||||| |||| |
seq2  A-----CTGC-TGAAAA--CAATTCGACAGATT---AGGCAACGGTAC-C  1173

seq1  AGTTTCTTTGTGGAAGCCCAGGTACTTTAT  1229
      || || |||||||||| |||||||||||||
seq2  AGGTTTTTTGTGGAAG-CCAGGTACTTTAT  1202

seq1: chr3_41059224_41059737
seq2: B6Ng01-121C19.g_67_581 (reverse)

seq1  CCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCA  50
      ||||| |||||| |||||||||||||| ||||||||||||||||||||||
seq2  CCACAAACCTATTGTCACTTGATCTTCAACAAGGGAGCTAAAACCATCCA  50

seq1  GTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGT  100
      ||||| ||||||||||||| |||||||| |||||||||||||||||| ||
seq2  GTGGAGAAAAGACAGCATTCTCAACAAAGGGTGCTGGCACAACTGGTGGT  100

seq1  TATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAG  150
      ||||||||||||||||| ||||||||| | |||||||||||| |||||||
seq2  TATCATGTAGAAGAATGTGAATTGATCGATTCCTATCTCCTTATACTAAG  150

seq1  GTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAA  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTCAAATCTAAGTGGATCAAGGAACTCCACATAAAACCAGAGACACTGAA  200

seq1  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGG  250
      |||||||||||||||||||||||||||||| |||||||||| ||||||||
seq2  ACTTATAGAGGAGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGG  250

seq1  AAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATA  300
      ||||||| |||   | ||||||||||| ||||||||||||||||||||| 
seq2  AAAAATTACTGAGAAAAACAGCAATGGATTGTGCTGTAAGATTGAGAATT  300

seq1  GACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACAC  350
      ||||||||||||||||| ||||||||||| |||||||||| |||||||||
seq2  GACAAATGGGACCTCATAAAACTGCAAAGGTTCTGCAAGGAAAAAGACAC  350

seq1  CGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCT  399
      | |||| |||||||||||| |||||||||||| |||||||||||||  ||
seq2  CTTCAAAAAGACAAAAAGGCCACCAACAGATTAGGAAAGGATCTTTGTCT  400

seq1  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAG  449
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAAG  450

seq1  AAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  499
      |||||||| | |||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGA  500

seq1  GCTAAACAAAGAATT  514
      |||||||||||||||
seq2  GCTAAACAAAGAATT  515