BAC Information

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BAC

Clone NameB6Ng01-121D21
Chromosome3 (Build37)
Map Location 117,362,692 - 117,429,422
singlet/doubletdoublet
Overlap gene4833424O15Rik, EG668759
Upstream geneHiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream geneSnx7, LOC100043260, Dpyd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121D21.bB6Ng01-121D21.g
ACCDH924975DH924976
length1,216970
definitionDH924975|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D21, 5' end.DH924976|Mus musculus domesticus DNA, BAC clone: B6Ng01-121D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,362,692 - 117,363,937)(117,428,906 - 117,429,422)
sequence
gaattctttctaataaaggcattttgcattagtttccatagtggtgaggt
cttttgggaacctctctgtaagccgtcttgattcagtagggtaatttagg
aaatgagtcatctttgaatttgaagcagctaaagcagaagccaacagttt
gtttggagcagcagagttgaccagttaaagagttaagttggcctttgggg
ccaacaaaaagatggcaagcatttaccaaagccatagagattctttaggg
attttgcccttcatagttttccctaatgatgggacagagtatcctgtcac
tcttagaatgccatgctggcatcttttttgtgtgttaagttccagctctc
ttgaatcatcaggtgctcagtttgggtctcttagccattttctcctctat
ccccaccaccccctccccccaaaaagggaattcaattaagacacaggaaa
taagtcttatgatcaggaagtgactaagtcctttgttcacagtccctttt
catttttttctttgccaatggtggcagctcaaaaataaagttgtgaagtc
acaataagctttatcttgatacatttctttcatttataaaatgaaggtag
taatgatatgtaatttataggattatattaaatattttagtgaaatgaag
tcttaaaaacattttcttggacagaaactactactcactaagtggaagat
ataatagatattagcatgattcatttcattcagttaactcacatttattt
taataaggatagggtatcttttgagttttgcagatgtgaagaaatcaacc
aaccttctgtctggttaaagaagatcccatgagacatccaaattctatgt
acctttcagatgagggattgccctcttaacaggatcactgcaaaagctcc
atagcttgaagttcttgctattcttgcagcagctttctttaacactgtct
ctcaagggcagagcatcctttgctcttttcatcttcccctgggtatcact
gttttctatactgacatgatgaagacccaaaacacagcttaaagtctacg
atcatacaccagatgccatgcagtgatacatcctcttctcgtttatactt
caccagaatatggcgcctgatacagaattacatgggctagattgcatggg
gagtgaatcgctgactgcttatgagccacttctctcgaagtatagcaggc
tgtaaatatattaccc
gaattcaaactgaaaaaaaaatcaaaatacatgtagcataaatagataaa
actgaaaggagaaatagactggaccacattacagacaggaatctatactc
tcctaataataactgagagaattaatgtactataaaattaacaagcacat
actgagcagtgttcctaaccaacttagcaaaattagtattaatagaacat
atagaaaacaactgtagaataccattttttttctataattacatatggga
tgttccccgagatagaccttctgttgctccataaaaataattctcaaact
acttaaatctttcaagatcttttattcatcctcaatggaattaaattaag
acaaaccatgaaaaggcatctagaagtgttctcaatttgactagctaaaa
tctagcaggtgatcttcttgtgatggttctgccttggattaaaatctatg
atggatttccaactaaaggcaaggaccaggagaatttcatttaggaaaag
ttcctgctattaatatgtatttcctcctattattaaatatatatatatat
attcactaagtataaacccacccttttgagcagatctctgcagaataatg
aagatatattgtcttgtagtgatactaatatagacaaataggtgatttct
taattctcaatgatgatcctataagaattcctaaaattatagttattatt
aagctattttcttatagtcaaacatgcaatgagaactctgccagtcttca
agtatcatgtgttaattgcttctgagatagtgaacaggcatctactatgc
agagaacattcccaaaggttataaaaccattaaccaaagtcataaaaagg
gaactattgatttactataagtgcaggcagagataaatatcggctgagtt
tatgtatacaaaacttcactgacagtcacagaagtcacttttatgatatt
tattatttacatttcaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117362692_117363937
seq2: B6Ng01-121D21.b_47_1262

seq1  GAATTCTTTCTAATAAAGGCATTTTGCATTAGTTTCCATAGTGGTGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTAATAAAGGCATTTTGCATTAGTTTCCATAGTGGTGAGGT  50

seq1  CTTTTGGGAACCTCTCTGTAAGCCGTCTTGATTCAGTAGGGTAATTTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGAACCTCTCTGTAAGCCGTCTTGATTCAGTAGGGTAATTTAGG  100

seq1  AAATGAGTCATCTTTGAATTTGAAGCAGCTAAAGCAGAAGCCAACAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTCATCTTTGAATTTGAAGCAGCTAAAGCAGAAGCCAACAGTTT  150

seq1  GTTTGGAGCAGCAGAGTTGACCAGTTAAAGAGTTAAGTTGGCCTTTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGCAGCAGAGTTGACCAGTTAAAGAGTTAAGTTGGCCTTTGGGG  200

seq1  CCAACAAAAAGATGGCAAGCATTTACCAAAGCCATAGAGATTCTTTAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAAAAGATGGCAAGCATTTACCAAAGCCATAGAGATTCTTTAGGG  250

seq1  ATTTTGCCCTTCATAGTTTTCCCTAATGATGGGACAGAGTATCCTGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCCTTCATAGTTTTCCCTAATGATGGGACAGAGTATCCTGTCAC  300

seq1  TCTTAGAATGCCATGCTGGCATCTTTTTTGTGTGTTAAGTTCCAGCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAATGCCATGCTGGCATCTTTTTTGTGTGTTAAGTTCCAGCTCTC  350

seq1  TTGAATCATCAGGTGCTCAGTTTGGGTCTCTTAGCCATTTTCTCCTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCATCAGGTGCTCAGTTTGGGTCTCTTAGCCATTTTCTCCTCTAT  400

seq1  CCCCACCACCCCCTCCCCCCAAAAAGGGAATTCAATTAAGACACAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCACCCCCTCCCCCCAAAAAGGGAATTCAATTAAGACACAGGAAA  450

seq1  TAAGTCTTATGATCAGGAAGTGACTAAGTCCTTTGTTCACAGTCCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTTATGATCAGGAAGTGACTAAGTCCTTTGTTCACAGTCCCTTTT  500

seq1  CATTTTTTTCTTTGCCAATGGTGGCAGCTCAAAAATAAAGTTGTGAAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTCTTTGCCAATGGTGGCAGCTCAAAAATAAAGTTGTGAAGTC  550

seq1  ACAATAAGCTTTATCTTGATACATTTCTTTCATTTATAAAATGAAGGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAAGCTTTATCTTGATACATTTCTTTCATTTATAAAATGAAGGTAG  600

seq1  TAATGATATGTAATTTATAGGATTATATTAAATATTTTAGTGAAATGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATATGTAATTTATAGGATTATATTAAATATTTTAGTGAAATGAAG  650

seq1  TCTTAAAAACATTTTCTTGGACAGAAACTACTACTCACTAAGTGGAAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAAACATTTTCTTGGACAGAAACTACTACTCACTAAGTGGAAGAT  700

seq1  ATAATAGATATTAGCATGATTCATTTCATTCAGTTAACTCACATTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGATATTAGCATGATTCATTTCATTCAGTTAACTCACATTTATTT  750

seq1  TAATAAGGATAGGGTATCTTTTGAGTTTTGCAGATGTGAAGAAATCAACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGGATAGGGTATCTTTTGAGTTTTGCAGATGTGAAGAAATCAACC  800

seq1  AACCTTCTGTCTGGTTAAAGAAGATCCCATGAGACATCCAAATTCTATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTGTCTGGTTAAAGAAGATCCCATGAGACATCCAAATTCTATGT  850

seq1  ACCTTTCAGATGAGGGATTGCCCTCTTAACAGGATCACTGCAAAAGCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCAGATGAGGGATTGCCCTCTTAACAGGATCACTGCAAAAGCTCC  900

seq1  ATAGCTTGAAGTTCTTGCTATTCTTGCAGGCAGCTTTCTTTAACACTGTC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAGCTTGAAGTTCTTGCTATTCTTGCA-GCAGCTTTCTTTAACACTGTC  949

seq1  TCTCAAGGGCAGGAGCATCCTTTGCTCTTTTTCATCTTCCCCTGGGTATC  1000
      ||||||||||| ||||||||||||||| ||||||||||||||||||||||
seq2  TCTCAAGGGCA-GAGCATCCTTTGCTC-TTTTCATCTTCCCCTGGGTATC  997

seq1  ACTGTTTTCTATAACTGACATGATGAAGGACCCAAAACACAGGCTTAAAG  1050
      |||||||||||| |||||||||||||| ||||||||||||| ||||||||
seq2  ACTGTTTTCTAT-ACTGACATGATGAA-GACCCAAAACACA-GCTTAAAG  1044

seq1  TCTACAGATCATACACCAGATGCCATTGGCCAAGTGATACAATCCCTCTT  1100
      ||||| ||||||||||||||||||||  ||  |||||||||   ||||||
seq2  TCTAC-GATCATACACCAGATGCCAT--GC--AGTGATACA--TCCTCTT  1087

seq1  CCTTCCTTTTATACTTCACCCAGAATATTGCGCCCTGATACAG-ATTACA  1149
      |    | ||||||||||| ||||||||| ||| |||||||||| ||||| 
seq2  C---TCGTTTATACTTCA-CCAGAATATGGCG-CCTGATACAGAATTAC-  1131

seq1  ATGGGCTAGAATTTGGCCATGGGGAGTTAGAATCGTCTGAGCTGCTTATG  1199
      ||||||||||  |||  ||||||||||  |||||| |||| |||||||||
seq2  ATGGGCTAGA--TTG--CATGGGGAGT--GAATCG-CTGA-CTGCTTATG  1173

seq1  AATGCACACTGCTCCTTCTGGATGATAACAGGCTGTAA--ATATTACCC  1246
      |  || |||| |||  || | |  ||| ||||||||||  |||||||||
seq2  A--GC-CACTTCTC--TC-GAAGTATAGCAGGCTGTAAATATATTACCC  1216

seq1: chr3_117428906_117429422
seq2: B6Ng01-121D21.g_65_581 (reverse)

seq1  CATATTAATAGCAGGAACTTTTCCTAAATGAAATTCTCCTGGTCCTTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTAATAGCAGGAACTTTTCCTAAATGAAATTCTCCTGGTCCTTGCC  50

seq1  TTTAGTTGGAAATCCATCATAGATTTTAATCCAAGGCAGAACCATCACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTGGAAATCCATCATAGATTTTAATCCAAGGCAGAACCATCACAA  100

seq1  GAAGATCACCTGCTAGATTTTAGCTAGTCAAATTGAGAACACTTCTAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCACCTGCTAGATTTTAGCTAGTCAAATTGAGAACACTTCTAGAT  150

seq1  GCCTTTTCATGGTTTGTCTTAATTTAATTCCATTGAGGATGAATAAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTCATGGTTTGTCTTAATTTAATTCCATTGAGGATGAATAAAAGA  200

seq1  TCTTGAAAGATTTAAGTAGTTTGAGAATTATTTTTATGGAGCAACAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAAGATTTAAGTAGTTTGAGAATTATTTTTATGGAGCAACAGAAG  250

seq1  GTCTATCTCGGGGAACATCCCATATGTAATTATAGAAAAAAAATGGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTCGGGGAACATCCCATATGTAATTATAGAAAAAAAATGGTATT  300

seq1  CTACAGTTGTTTTCTATATGTTCTATTAATACTAATTTTGCTAAGTTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGTTGTTTTCTATATGTTCTATTAATACTAATTTTGCTAAGTTGGT  350

seq1  TAGGAACACTGCTCAGTATGTGCTTGTTAATTTTATAGTACATTAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACACTGCTCAGTATGTGCTTGTTAATTTTATAGTACATTAATTCT  400

seq1  CTCAGTTATTATTAGGAGAGTATAGATTCCTGTCTGTAATGTGGTCCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTATTATTAGGAGAGTATAGATTCCTGTCTGTAATGTGGTCCAGT  450

seq1  CTATTTCTCCTTTCAGTTTTATCTATTTATGCTACATGTATTTTGATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTCCTTTCAGTTTTATCTATTTATGCTACATGTATTTTGATTTT  500

seq1  TTTTTCAGTTTGAATTC  517
      |||||||||||||||||
seq2  TTTTTCAGTTTGAATTC  517