BAC Information

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BAC

Clone NameB6Ng01-121E08
Chromosome3 (Build37)
Map Location 64,080,711 - 64,210,445
singlet/doubletdoublet
Overlap gene4930518C23Rik, EG637004, EG667031, EG637053
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739
Downstream geneLOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121E08.bB6Ng01-121E08.g
ACCDH924997DH924998
length9361,164
definitionDH924997|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E08, 5' end.DH924998|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,080,711 - 64,081,651)(64,209,264 - 64,210,445)
sequence
gaattcatatcatataaaatcttgttacttggatcttctcattcctcgat
tccaccacaagtaaattaatattatgacaaaatataattttttctttata
tcaaattataaaatagaagatttatgttattcttctttcctaagagtttc
taaaagacattagaaagaagtaaatataaaggtttttggctatacatgaa
ttcattagatttttgtttgtttgtttgtttttctttctttttttttttaa
gatttatttattatatgtaagtacactgtagctgtcttcagacacaccag
aagagggcggaagatctcattatggatggttgtgagccaccatgtggttg
ctgggatttgaactccggacctttggaagagcagtcgggtgcccttaccc
actgagccatctcaccagactgaattcattagattttatggaaggcaggc
ctcatcacagctgcaggttggatgagctccatgaaggccacacttaagat
aagtttcaagttacccacctttccttatattgcttttcctagtaatttcc
ttcctattcttcacatttacttctgtgtctctcaaaaataaatactgtag
gtttgaggttgtgggccattaattcaacattagtctccaaagagttagtt
tctggatttaatctggagtatcacaaaagaaaaggaaagaaagagaggaa
ggagccgggcgtggtggcgcacgcctttaatcccagcactcgggaggcag
aggcaggcagatttctgtgttcgaggccagcctggtctacaaagtgagct
ccaggacagccagggctatacagagaaaccctgtctcgaaaaacaaaaac
aaacaaacaaacaaaaaaaaaaaaaaaaaaacaaagaagagaggaggatg
ttaggaggaagtatagatatagaaaagatgaataag
gaattcctttatgatgtacaccctagcaaggatccaaatgatgtcttgac
cattgaattctggcaaactgcttttaactgtacctggcccaacagcagtg
tggcttacaatgtggaccacagagtgaatatgactggtaaagaagacaga
ctgtatgacatgtctgatcagctctgcactggagaggagaagctggaaga
tctgaaaaatacctatctggatacatctcagctaagaatcacaaacaatg
tcagacaagctgtgtatctttttgctcatgcgatggatattttgagacaa
gatgacataagagaagaatatagggaaaagtcagtacttgaaagtaaatc
tatccttgattatataaaggtatgttatttgaccatattatgtagtgtaa
tataaaatcaagtgtttacacccatgttcatacctctgaaactgctaatt
tgcttccatgtgattgtatgtcatcaaaacatgtctgggtgacttgattg
ttcattttcaatcgtcatttcttaaaaacttgctaggtttgttgtcagtg
ataacaaacctgtctcccataaaaattattaatgcactttagaaaatata
ctgttattcttcacagcagtgaaatataatgtgtctaggagtaaaacatg
aggtattgcctctggtttccttctttggtctattccccatatacaatata
caactccaaatctaagatcactacttggattccaaaacaccaggttcatg
ttaggctaggatatttatggctcttcaggtaatgatgattcctgaatatt
atatacagttttccttacactccatgtcttttgtcttatctatttaaatg
aaagaatagaaaatgaggtcttcatataatatagcaagagccacacaaaa
ggatggatgtcaggaataaagattatagctggtatctaggacagtcatgt
ctactgtgtctgtccttcatcatctttcaaatgattcagttggtaaaagt
gagaagtcttgaaataaatgctcattcgttcattctgcttgtttttgtcc
atccctccatttacaaagataggaattgatacatcatacttggtcttgtc
gaccacagagatcacataacatcactaattgtacttctcatgccttacaa
atctcttttatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64080711_64081651
seq2: B6Ng01-121E08.b_48_973

seq1  GAATTCATATCATATAAAATCTTGTTACTTGGATCTTCTCATTCCTCGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCATATAAAATCTTGTTACTTGGATCTTCTCATTCCTCGAT  50

seq1  TCCACCACAAGTAAATTAATATTATGACAAAATATAATTTTTTCTTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCACAAGTAAATTAATATTATGACAAAATATAATTTTTTCTTTATA  100

seq1  TCAAATTATAAAATAGAAGATTTATGTTATTCTTCTTTCCTAAGAGTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATAAAATAGAAGATTTATGTTATTCTTCTTTCCTAAGAGTTTC  150

seq1  TAAAAGACATTAGAAAGAAGTAAATATAAAGGTTTTTGGCTATACATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACATTAGAAAGAAGTAAATATAAAGGTTTTTGGCTATACATGAA  200

seq1  TTCATTAGATTTTTGTTTGTTTGTTTGTTTTTCTTTCTTTTTTTTTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAGATTTTTGTTTGTTTGTTTGTTTTTCTTTCTTTTTTTTTTTAA  250

seq1  GATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAG  300

seq1  AAGAGGGCGGAAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCGGAAGATCTCATTATGGATGGTTGTGAGCCACCATGTGGTTG  350

seq1  CTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCCCTTACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCCCTTACCC  400

seq1  ACTGAGCCATCTCACCAGACTGAATTCATTAGATTTTATGGAAGGCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATCTCACCAGACTGAATTCATTAGATTTTATGGAAGGCAGGC  450

seq1  CTCATCACAGCTGCAGGTTGGATGAGCTCCATGAAGGCCACACTTAAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACAGCTGCAGGTTGGATGAGCTCCATGAAGGCCACACTTAAGAT  500

seq1  AAGTTTCAAGTTACCCACCTTTCCTTATATTGCTTTTCCTAGTAATTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAAGTTACCCACCTTTCCTTATATTGCTTTTCCTAGTAATTTCC  550

seq1  TTCCTATTCTTCACATTTACTTCTGTGTCTCTCAAAAATAAATACTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTCTTCACATTTACTTCTGTGTCTCTCAAAAATAAATACTGTAG  600

seq1  GTTTGAGGTTGTGGGCCATTAATTCAACATTAGTCTCCAAAGAGTTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGTTGTGGGCCATTAATTCAACATTAGTCTCCAAAGAGTTAGTT  650

seq1  TCTGGATTTAATCTGGAGTATCACAAAAGAAAAGGAAAGAAAGAGAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATTTAATCTGGAGTATCACAAAAGAAAAGGAAAGAAAGAGAGGAA  700

seq1  GGAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCGGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAG  750

seq1  AGGCAGGCAGATTTCTGTGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGATTTCTGTGTTCGAGGCCAGCCTGGTCTACAAAGTGAGCT  800

seq1  CCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAAAA  850
      ||||||||||||||||||||||||||||||||||||||        ||||
seq2  CCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCG--------AAAA  842

seq1  ACAAAACAAAACAAACAAAAAAAAAAAAAAAAAAAAAAAACAAAAGAAAG  900
      ||||||  |||||||| ||| |||||||||||||||||||||||   |||
seq2  ACAAAAACAAACAAAC-AAACAAAAAAAAAAAAAAAAAAACAAA--GAAG  889

seq1  AGAAGGAAGGATGTAAGGAAGGAAGTAATAGATATAGAAAA  941
      |||  | ||||||| ||| ||||||| ||||||||||||||
seq2  AGA--GGAGGATGTTAGG-AGGAAGT-ATAGATATAGAAAA  926

seq1: chr3_64209264_64210445
seq2: B6Ng01-121E08.g_67_1230 (reverse)

seq1  AAAATAAAGAGATATTGATAAGGCAATGAAGAAGTAACAAATTAGTGATG  50
      |||||||| ||| |||  |||||| ||| |||||||   |||||||||||
seq2  AAAATAAA-AGAGATTTGTAAGGC-ATG-AGAAGTA--CAATTAGTGATG  45

seq1  TTATGTGGATCTCCTGTGGGTCTGACAAGACCAAGTATTGATG-ATCAAA  99
      |||||| ||||| |||| |||| |||||||||||||| ||||| ||| ||
seq2  TTATGT-GATCT-CTGT-GGTC-GACAAGACCAAGTA-TGATGTATC-AA  89

seq1  TTCCTTATCTTTTGTAAATTGGAAGGATGGACAAAAACAAGCAGAAATTG  149
      |||| |||| |||||||| |||| ||||||||||||||||||||||  ||
seq2  TTCC-TATC-TTTGTAAA-TGGAGGGATGGACAAAAACAAGCAGAA--TG  134

seq1  AACGGATGAGCATATATTTCAAGACTTCTCACCTTTTACCAACTTGAATC  199
      |||| |||||||| ||||||||||||||||| ||||||||||| ||||||
seq2  AACGAATGAGCATTTATTTCAAGACTTCTCA-CTTTTACCAAC-TGAATC  182

seq1  ATTTGAAAGATGATGAAGGACAGACACAGTAGACATGACTGTCCTAGATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAGATGATGAAGGACAGACACAGTAGACATGACTGTCCTAGATA  232

seq1  CCAGCTATAATCTTTATTCCCTGACATCCATCCTTTTGTGTGGCTCTTGC  299
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAGCTATAATCTTTATT-CCTGACATCCATCCTTTTGTGTGGCTCTTGC  281

seq1  TATATTATATGAAGACCTCATTTTCTATTCTTTCATTTAAATAGATAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTATATGAAGACCTCATTTTCTATTCTTTCATTTAAATAGATAAGA  331

seq1  CAAAAGACATGGAGTGTAAGGAAAACTGTATATAATATTCAGGAATCATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGACATGGAGTGTAAGGAAAACTGTATATAATATTCAGGAATCATC  381

seq1  ATTACCTGAAGAGCCATAAATATCCTAGCCTAACATGAACCTGGTGTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCTGAAGAGCCATAAATATCCTAGCCTAACATGAACCTGGTGTTTT  431

seq1  GGAATCCAAGTAGTGATCTTAGATTTGGAGTTGTATATTGTATATGGGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCAAGTAGTGATCTTAGATTTGGAGTTGTATATTGTATATGGGGA  481

seq1  ATAGACCAAAGAAGGAAACCAGAGGCAATACCTCATGTTTTACTCCTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCAAAGAAGGAAACCAGAGGCAATACCTCATGTTTTACTCCTAGA  531

seq1  CACATTATATTTCACTGCTGTGAAGAATAACAGTATATTTTCTAAAGTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTATATTTCACTGCTGTGAAGAATAACAGTATATTTTCTAAAGTGC  581

seq1  ATTAATAATTTTTATGGGAGACAGGTTTGTTATCACTGACAACAAACCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAATTTTTATGGGAGACAGGTTTGTTATCACTGACAACAAACCTA  631

seq1  GCAAGTTTTTAAGAAATGACGATTGAAAATGAACAATCAAGTCACCCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTTTTAAGAAATGACGATTGAAAATGAACAATCAAGTCACCCAGA  681

seq1  CATGTTTTGATGACATACAATCACATGGAAGCAAATTAGCAGTTTCAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTGATGACATACAATCACATGGAAGCAAATTAGCAGTTTCAGAG  731

seq1  GTATGAACATGGGTGTAAACACTTGATTTTATATTACACTACATAATATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAACATGGGTGTAAACACTTGATTTTATATTACACTACATAATATG  781

seq1  GTCAAATAACATACCTTTATATAATCAAGGATAGATTTACTTTCAAGTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATAACATACCTTTATATAATCAAGGATAGATTTACTTTCAAGTAC  831

seq1  TGACTTTTCCCTATATTCTTCTCTTATGTCATCTTGTCTCAAAATATCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTCCCTATATTCTTCTCTTATGTCATCTTGTCTCAAAATATCCA  881

seq1  TCGCATGAGCAAAAAGATACACAGCTTGTCTGACATTGTTTGTGATTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCATGAGCAAAAAGATACACAGCTTGTCTGACATTGTTTGTGATTCTT  931

seq1  AGCTGAGATGTATCCAGATAGGTATTTTTCAGATCTTCCAGCTTCTCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGATGTATCCAGATAGGTATTTTTCAGATCTTCCAGCTTCTCCTC  981

seq1  TCCAGTGCAGAGCTGATCAGACATGTCATACAGTCTGTCTTCTTTACCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCAGAGCTGATCAGACATGTCATACAGTCTGTCTTCTTTACCAG  1031

seq1  TCATATTCACTCTGTGGTCCACATTGTAAGCCACACTGCTGTTGGGCCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCACTCTGTGGTCCACATTGTAAGCCACACTGCTGTTGGGCCAG  1081

seq1  GTACAGTTAAAAGCAGTTTGCCAGAATTCAATGGTCAAGACATCATTTGG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGTTAAAAGCAGTTTGCCAGAATTCAATGGTCAAGACATCATTTGG  1131

seq1  ATCCTTGCTAGGGTGTACATCATAAAGGAATTC  1182
      |||||||||||||||||||||||||||||||||
seq2  ATCCTTGCTAGGGTGTACATCATAAAGGAATTC  1164