BAC Information

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BAC

Clone NameB6Ng01-121I11
Chromosome3 (Build37)
Map Location 62,306,585 - 62,307,688
singlet/doubletsinglet
Overlap geneDhx36
Upstream geneLOC669910, LOC676965, 4631416L12Rik
Downstream geneGpr149, LOC676984, LOC666967, Mme
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121I11.bB6Ng01-121I11.g
ACCDH925188DH925189
length1,2701,073
definitionDH925188|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I11, 5' end.DH925189|Mus musculus domesticus DNA, BAC clone: B6Ng01-121I11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatgatcgtgggcccactgtcgtacttctctggctgtgaagtga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcagtccgtgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgtcctttccacgaaggaagtggtccaatgtagtcaacctgccacca
ggttgctggctggtcacctcgaggaatggtgccatatctggggctcagtg
ttggtttctgctgttggcagatctggcaatcagcagcagctgtagccagg
tcagctttggtgagtggaagcccgtgttgctgagcccaagcataacctcc
atctcgaccaccatggccactttgttcatgtgcccattgagcaatgacag
ggatggctggggagagaggctgactgtccacagaacgggtcatcttatcc
acttgattattgaactcctcctcggctgaagtcaccttttggtgagcatt
tacatgggacacaaatatcttcacatcctttgcccatttgtagagatcta
tccacatacttcttccccagatgtctttctcaccaattttccaattgtga
tctttccaagtccctgaccatccagccaatccattggctacagcccatga
gtcggtgaataatcgtacatctggccatttcttcttgcaaacaaactgta
ataccatgtgtactgcccgaagttctgcccactgtgaagatttcccttca
cctgtgtctttcaaggttgtcccagaaaggggttgtaatgctgcagctgt
ccacttctgggtggtgcctgcataacgtgcagagccatcagtaaaccagg
ctctagtcttcttcttttcggtcagttgatcatagggaacaccccatgaa
gctataggcacatgttggcagcagatggcattgtaacaggagtagaacca
taaggcatttgagcaacttctcatgtaactgcttggtgccttcaggacct
gctctggcccgatcacgatgtaaccactttccatttgataatagactgct
tccttgcacgttccacatttatgacttgcaagtcttgaatagtatccagc
tctatgatgggtagatcaggtcccatataaacttggtgtcatatgtcaac
gttagtttccatatgcccaataacgccagagactgtttttactaggagaa
gaaagtgatcgtcgctatga
gaattcatgtgcacatgttctgaagtagacctatcttgtttctccaactt
gaatatgcataggattcacctggcacctagttaaagtaaatgaccggaca
gagccagagagtctacttctctaacagacttacacatgatgccagcgtta
ctcgccatgtaggtcattccagctgtaaagtgggcaacacataattagag
gaagagaagaccggggagaaaattcaagggtggaatacccagaggtgggg
agaagggcatggaaattgatagtggcaggcagtcgaattctggagacgag
gaaatggagcacttgccagtaggtttgctggtgatgctgaaaactagaac
atagctttaggcctggggaaacgaaacggcggggatgatttcactttgta
tgtttggtggagaggttgggcattaatgactgctgattttctgtttgggc
cttgagcgccagatattgtgagaggttctaccattcattataggatgggc
atagcttctctacaaaatctgtagagatccagattcaggtttctgttaat
gattagtacaattaggaaaatctcatcattgctttaattgacttaaaaag
gtcctcttttaaccttgactaccacagggacataaaagcacagtccatat
accatctacctaagttccacttaaataatccgtaattcctaaggtttctt
tattctctttttaaactattttatctttcaattaatatgtggactttttc
cttcttgagttctttaatctaataggctcatattttgaccactcttgatt
ccccattgcctgtgaattcatgtgcacattattaagtatggattataaga
agttgagtttgtaggctcataatttggaagaatatttgttaaacttccta
tataaatgaagtctcaaagatacgttgacattgttttatttgcatggcat
ttcattcatgctgcatgtagatttctataagctctaagactgctttctag
ttctgatacttctcattttatcactgaagcagctactgcatagccatctc
tgaataccacgtcttatgaaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_62306585_62307688
seq2: B6Ng01-121I11.g_66_1138 (reverse)

seq1  GATTTCATAAGGAACTGTTGGGTATTCAGAGATGGCTAATGCAGTAGCTG  50
      |||||||||||  || ||  ||||||||||||||||| ||||||||||||
seq2  GATTTCATAAG--AC-GT--GGTATTCAGAGATGGCT-ATGCAGTAGCTG  44

seq1  CTTCAGGTGATAAAAATGAAGAAAGTATCAGAACTAGAAAAGGCAGTCTT  100
      ||||| ||||| |||||||   ||||||||||||||||||  |||||| |
seq2  CTTCA-GTGAT-AAAATGA--GAAGTATCAGAACTAGAAA--GCAGTC-T  87

seq1  TAGAGGCTATAGAAATCCTAAACATGCAGCAATGAAATGAAATGCCAATG  150
      |||||  ||||||||||    ||||||||| ||| ||||||||||| |||
seq2  TAGAGCTTATAGAAATC---TACATGCAGC-ATG-AATGAAATGCC-ATG  131

seq1  CAAATAAAAACAAATGTCAAACGTAATTCTTTGAAGACTTTCATTTTATA  200
      |||||||||   |||||| ||||||  |||||| |||| |||| ||||||
seq2  CAAATAAAA--CAATGTC-AACGTA--TCTTTG-AGAC-TTCA-TTTATA  173

seq1  TAGGAAGTTTAACAAAATATTCTTCCAAAATTATGAGCCTACAAACCTCA  250
      ||||||||||||| |||||||||||| |||||||||||||||||| ||||
seq2  TAGGAAGTTTAAC-AAATATTCTTCC-AAATTATGAGCCTACAAA-CTCA  220

seq1  ACTTCTTTATAATCCATACTTAATAATGTGCACATGAATTCACAGGCAAT  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTC-TTATAATCCATACTTAATAATGTGCACATGAATTCACAGGCAAT  269

seq1  GGGGAATCAAGAGTGGTCAAAATATGAGCCTATTAGATTAAAGAACTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATCAAGAGTGGTCAAAATATGAGCCTATTAGATTAAAGAACTCAA  319

seq1  GAAGGAAAAAGTCCACATATTAATTGAAAGATAAAATAGTTTAAAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAAGTCCACATATTAATTGAAAGATAAAATAGTTTAAAAAGAG  369

seq1  AATAAAGAAACCTTAGGAATTACGGATTATTTAAGTGGAACTTAGGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAACCTTAGGAATTACGGATTATTTAAGTGGAACTTAGGTAGA  419

seq1  TGGTATATGGACTGTGCTTTTATGTCCCTGTGGTAGTCAAGGTTAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATGGACTGTGCTTTTATGTCCCTGTGGTAGTCAAGGTTAAAAGA  469

seq1  GGACCTTTTTAAGTCAATTAAAGCAATGATGAGATTTTCCTAATTGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTTTTAAGTCAATTAAAGCAATGATGAGATTTTCCTAATTGTACT  519

seq1  AATCATTAACAGAAACCTGAATCTGGATCTCTACAGATTTTGTAGAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTAACAGAAACCTGAATCTGGATCTCTACAGATTTTGTAGAGAAG  569

seq1  CTATGCCCATCCTATAATGAATGGTAGAACCTCTCACAATATCTGGCGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCATCCTATAATGAATGGTAGAACCTCTCACAATATCTGGCGCT  619

seq1  CAAGGCCCAAACAGAAAATCAGCAGTCATTAATGCCCAACCTCTCCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCCAAACAGAAAATCAGCAGTCATTAATGCCCAACCTCTCCACCA  669

seq1  AACATACAAAGTGAAATCATCCCCGCCGTTTCGTTTCCCCAGGCCTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACAAAGTGAAATCATCCCCGCCGTTTCGTTTCCCCAGGCCTAAAG  719

seq1  CTATGTTCTAGTTTTCAGCATCACCAGCAAACCTACTGGCAAGTGCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTCTAGTTTTCAGCATCACCAGCAAACCTACTGGCAAGTGCTCCA  769

seq1  TTTCCTCGTCTCCAGAATTCGACTGCCTGCCACTATCAATTTCCATGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCGTCTCCAGAATTCGACTGCCTGCCACTATCAATTTCCATGCCC  819

seq1  TTCTCCCCACCTCTGGGTATTCCACCCTTGAATTTTCTCCCCGGTCTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCCACCTCTGGGTATTCCACCCTTGAATTTTCTCCCCGGTCTTCT  869

seq1  CTTCCTCTAATTATGTGTTGCCCACTTTACAGCTGGAATGACCTACATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTAATTATGTGTTGCCCACTTTACAGCTGGAATGACCTACATGG  919

seq1  CGAGTAACGCTGGCATCATGTGTAAGTCTGTTAGAGAAGTAGACTCTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTAACGCTGGCATCATGTGTAAGTCTGTTAGAGAAGTAGACTCTCTG  969

seq1  GCTCTGTCCGGTCATTTACTTTAACTAGGTGCCAGGTGAATCCTATGCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCCGGTCATTTACTTTAACTAGGTGCCAGGTGAATCCTATGCAT  1019

seq1  ATTCAAGTTGGAGAAACAAGATAGGTCTACTTCAGAACATGTGCACATGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTTGGAGAAACAAGATAGGTCTACTTCAGAACATGTGCACATGA  1069

seq1  ATTC  1104
      ||||
seq2  ATTC  1073