BAC Information

Click to search

BAC

Clone NameB6Ng01-121J07
Chromosome3 (Build37)
Map Location 53,082,454 - 53,224,815
singlet/doubletdoublet
Overlap geneLOC666413
Upstream geneFoxo1, LOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808
Downstream gene8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121J07.bB6Ng01-121J07.g
ACCDH925228DH925229
length1,1691,111
definitionDH925228|Mus musculus domesticus DNA, BAC clone: B6Ng01-121J07, 5' end.DH925229|Mus musculus domesticus DNA, BAC clone: B6Ng01-121J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,082,454 - 53,083,648)(53,223,679 - 53,224,815)
sequence
gaattctacccctaccccgtgtgtgtgtgggtacagctggaagagactgg
agcaaggggatccaaaagcagagttcaggctagagcttaatttatctggg
gtcggtaatgcttggtctctctaggcagccagagtcccttctgtctgata
ctcttagcaatgccagtgttcctgggcataggggctggcctctcccacca
aggccttggaagcgaccaggaaacctcatagcttctgctgagcatgtcag
agctgttccagcattaactgatgcagacttcctgtggtgcccattcctca
aatgtccactagacccttctcataactcctcccctttgataacatctctt
tcccttaacatttgctaggtggacacttaaataacatgaagatcaagtca
agcatgggggaccagagaagaatctcgggattaacagaaggagaagagat
ccgctgtagtccagtacccttggattaaaccctgaagatcagcaccctcc
tccttccctcaggatacagtctgtggtccctctgctttaaaatctgcggc
tctattcacagtagttgctcaccttttattgctgaaaagcttggcctatg
actacacaagactagggatgaagtggtaccttgttgagaggatttttttt
tttaaagaaataattcggcaagaaaaatagccatgagcataattcaataa
gcaaactcgcggtgaggatgaagcacatgcagaaggtcataaaacttccc
agcaaaggaaatcaatgtctttaagtatgatttgtcatttggaatttgga
gtctaagccacagtgccttccctggggtacgagcatttagtgctagacaa
agaagattagctttctttcctacagagcagaaagaagtatgcttttctgg
tgagcccagcaaggaggtccctggggatggcctcgctaattagatagttc
agttggactggtgcagtactcatatagaagtatacataaggggctagaga
gatggctcagagtagagttgtgctgcttttcagaagatctgagtcaatcc
agcacttatagtgtagctacacatctataaaatctgttcctctctggttc
agcatacacgcaggagaaactgataaataaaaaataattattcctagata
ctaaaaaggaaactgccag
gaattcccatgtcttcatcccaaagtcacctttaccttcctgatacttcc
cgtttgcttctaggagatttctaggaatttgaggccaacctgggctgcat
gatataaactaggctagaccaggatccagaggaaggacccatccctataa
gggggcggagctagttgcctccttagtaagaatcgaaaacgtgggggcgt
tgcttgttttcttttctttttgtttgtttgtttttttccattcactttat
atatgagtggctgatgtctacagatctctcatctggacacttacatcttt
gttcttaagacatcagtaagtgaaaaggaatttggtctgtgacccactat
tccgttgagttgcctcagacaagtccatttgtagttttgggcttcacttt
cctcgcatctaaagtaaaaggctgagccagattatctccgaagatccttc
cagctcctaatgctgtgctcggtgatcttttccacatgttggaccgtgca
gtgcgagcatgtgtgtccactaagttaacctgcgttaaacactgttgcag
aaagcaggtgcccagctgcagctgcagccggaggtcaatgccttcctgtg
ctctgactcttcgccccatttttcactccccaataacaaggaaagtggcg
gcattttgtagagcagcggttctcaacctgtgggtcgtgacccctttggg
gattgattgacacttttagaaagggtcatccaagaccatcagaaaactca
gatatgtatattacaattcataacactaataaaattacagttatgaagta
gtaacaaaaataattttttgatggaggttactacaacatgaggaactgta
ttaaagggtcatggtcttaggaaggttgagaaccgctgacctagagcatc
agacagttgttcatctttatccactttcttcttagatatagtccacactt
gagggatatgagcacctgagatgtctcatatactgggtgatgctgttggc
tggacttcagctctgacttgaagaagcttgttcttgcctcttgtactttt
tgtttccactaagccacattggataggaggagagccactcccagaagatg
gagccctgcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53082454_53083648
seq2: B6Ng01-121J07.b_47_1215

seq1  GAATTCTACCCCTACCCCGTGTGTGTGTGGGTACAGCTGGAAGAGACTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCCCTACCCCGTGTGTGTGTGGGTACAGCTGGAAGAGACTGG  50

seq1  AGCAAGGGGATCCAAAAGCAGAGTTCAGGCTAGAGCTTAATTTATCTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGGATCCAAAAGCAGAGTTCAGGCTAGAGCTTAATTTATCTGGG  100

seq1  GTCGGTAATGCTTGGTCTCTCTAGGCAGCCAGAGTCCCTTCTGTCTGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTAATGCTTGGTCTCTCTAGGCAGCCAGAGTCCCTTCTGTCTGATA  150

seq1  CTCTTAGCAATGCCAGTGTTCCTGGGCATAGGGGCTGGCCTCTCCCACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGCAATGCCAGTGTTCCTGGGCATAGGGGCTGGCCTCTCCCACCA  200

seq1  AGGCCTTGGAAGCGACCAGGAAACCTCATAGCTTCTGCTGAGCATGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGGAAGCGACCAGGAAACCTCATAGCTTCTGCTGAGCATGTCAG  250

seq1  AGCTGTTCCAGCATTAACTGATGCAGACTTCCTGTGGTGCCCATTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCCAGCATTAACTGATGCAGACTTCCTGTGGTGCCCATTCCTCA  300

seq1  AATGTCCACTAGACCCTTCTCATAACTCCTCCCCTTTGATAACATCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCACTAGACCCTTCTCATAACTCCTCCCCTTTGATAACATCTCTT  350

seq1  TCCCTTAACATTTGCTAGGTGGACACTTAAATAACATGAAGATCAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAACATTTGCTAGGTGGACACTTAAATAACATGAAGATCAAGTCA  400

seq1  AGCATGGGGGACCAGAGAAGAATCTCGGGATTAACAGAAGGAGAAGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGGGGGACCAGAGAAGAATCTCGGGATTAACAGAAGGAGAAGAGAT  450

seq1  CCGCTGTAGTCCAGTACCCTTGGATTAAACCCTGAAGATCAGCACCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTGTAGTCCAGTACCCTTGGATTAAACCCTGAAGATCAGCACCCTCC  500

seq1  TCCTTCCCTCAGGATACAGTCTGTGGTCCCTCTGCTTTAAAATCTGCGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCTCAGGATACAGTCTGTGGTCCCTCTGCTTTAAAATCTGCGGC  550

seq1  TCTATTCACAGTAGTTGCTCACCTTTTATTGCTGAAAAGCTTGGCCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCACAGTAGTTGCTCACCTTTTATTGCTGAAAAGCTTGGCCTATG  600

seq1  ACTACACAAGACTAGGGATGAAGTGGTACCTTGTTGAGAGGATTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACAAGACTAGGGATGAAGTGGTACCTTGTTGAGAGGATTTTTTTT  650

seq1  TTTAAAGAAATAATTCGGCAAGAAAAATAGCCATGAGCATAATTCAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGAAATAATTCGGCAAGAAAAATAGCCATGAGCATAATTCAATAA  700

seq1  GCAAACTCGCGGTGAGGATGAAGCACATGCAGAAGGTCATAAAACTTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACTCGCGGTGAGGATGAAGCACATGCAGAAGGTCATAAAACTTCCC  750

seq1  AGCAAAGGAAATCAATGTCTTTAAGTATGATTTGTCATTTGGAATTTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGAAATCAATGTCTTTAAGTATGATTTGTCATTTGGAATTTGGA  800

seq1  GTCTAAGCCACAGTGCCTTCCCTGGGGTACGAGCATTTAGTGCTAGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGCCACAGTGCCTTCCCTGGGGTACGAGCATTTAGTGCTAGACAA  850

seq1  AGAAGATTAGCTTTCTTTCCTACAGAGCAGAAAGAAGTATGCTTTTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATTAGCTTTCTTTCCTACAGAGCAGAAAGAAGTATGCTTTTCTGG  900

seq1  TGAGCCCAGCAAGGAGGTCCCTGGGGATGGCCTCGCTAATTAGATAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCCAGCAAGGAGGTCCCTGGGGATGGCCTCGCTAATTAGATAGTTC  950

seq1  AGTTGGACTGGTGCAGTACTCATATAGAAGTATACATAAGGGGCTAGAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGACTGGTGCAGTACTCATATAGAAGTATACATAAGGGGCTAGAGA  1000

seq1  GATGGCTCAGAGGTTAAGAGTTGTGGCTGCTTTTCCAGAGATCCTGAGTT  1050
      ||||||||||||    |||||||| ||||||||||   |||| ||||| |
seq2  GATGGCTCAGAG---TAGAGTTGT-GCTGCTTTTCAGAAGAT-CTGAG-T  1044

seq1  CAATTCCCAGCACCTTATAGGTGGTAGCTTACAACCATCTATAAGATCTG  1100
      ||||  |||||| |||||||   ||||| ||||  ||||||||| |||||
seq2  CAAT--CCAGCA-CTTATAG--TGTAGC-TACA--CATCTATAAAATCTG  1086

seq1  GTTCCCTCTTCTGGTGTGCAGGCATACACGCAGGGAGAAAACTGTATAAA  1150
        | |||| ||||  || || ||||||||||| |||| |||||| |||||
seq2  --TTCCTC-TCTG--GTTCA-GCATACACGCA-GGAG-AAACTG-ATAAA  1127

seq1  TAATAAATAAATATTTCCTAAGTATACATAAAAAGAAACTGCCAG  1195
      ||| |||||| || ||||||   ||||  |||| |||||||||||
seq2  TAAAAAATAATTA-TTCCTA--GATACTAAAAAGGAAACTGCCAG  1169

seq1: chr3_53223679_53224815
seq2: B6Ng01-121J07.g_68_1178 (reverse)

seq1  CTGCAGGGCTTCCTACTTTCTGGAAGTGGCTTCTTCCTCCTTTATCACAA  50
      ||||||||||  | |  |||||| |||||||   ||||||  |||| |||
seq2  CTGCAGGGCT--CCATCTTCTGGGAGTGGCT--CTCCTCC--TATC-CAA  43

seq1  TGTGGCCCTTAGTGGAACACAAAAGTTACAAAGAGCACAGAACAAGCCCT  100
      |||||  |||||||||| ||||||  ||| |||||   ||||||||  ||
seq2  TGTGG--CTTAGTGGAA-ACAAAAAGTAC-AAGAGGCAAGAACAAG--CT  87

seq1  TCTTCAAGTTCAGAGGCTGAAAGTCCAGCCAACAGCATCACCCAGTATAT  150
      |||||||| ||||| |||| ||||||||||||||||||||||||||||||
seq2  TCTTCAAG-TCAGA-GCTG-AAGTCCAGCCAACAGCATCACCCAGTATAT  134

seq1  GAGACAATTCCTTCAGGTGCTTCAATATCCCTCAAGTGTGGACTTATATT  200
      ||||||  ||  |||||||||   ||||||||||||||||||| |||| |
seq2  GAGACA--TC--TCAGGTGCT--CATATCCCTCAAGTGTGGAC-TATA-T  176

seq1  CTAAGAAGAAAAGTGGATAAAGATGAACAACTTGTCTGATTGCTCTAGGT  250
      |||||||| |||||||||||||||||||||| ||||||| ||||||||||
seq2  CTAAGAAG-AAAGTGGATAAAGATGAACAAC-TGTCTGA-TGCTCTAGGT  223

seq1  CAGCGGTTCTCAACCTTCCTAAGACCATGACCCTTTAATACAGTTCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGTTCTCAACCTTCCTAAGACCATGACCCTTTAATACAGTTCCTCA  273

seq1  TGTTGTAGTAACCTCCATCAAAAAATTATTTTTGTTACTACTTCATAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAGTAACCTCCATCAAAAAATTATTTTTGTTACTACTTCATAACT  323

seq1  GTAATTTTATTAGTGTTATGAATTGTAATATACATATCTGAGTTTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTATTAGTGTTATGAATTGTAATATACATATCTGAGTTTTCTGA  373

seq1  TGGTCTTGGATGACCC-TTCTAAAAGTGTCAATCAATCCCCAAAGGGGTC  449
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGTCTTGGATGACCCTTTCTAAAAGTGTCAATCAATCCCCAAAGGGGTC  423

seq1  ACGACCCACAGGTTGAGAACCGCTGCTCTACAAAATGCCGCCACTTTCCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGACCCACAGGTTGAGAACCGCTGCTCTACAAAATGCCGCCACTTTCCT  473

seq1  TGTTATTGGGGAGTGAAAAATGGGGCGAAGAGTCAGAGCACAGGAAGGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGGGGAGTGAAAAATGGGGCGAAGAGTCAGAGCACAGGAAGGCA  523

seq1  TTGACCTCCGGCTGCAGCTGCAGCTGGGCACCTGCTTTCTGCAACAGTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCCGGCTGCAGCTGCAGCTGGGCACCTGCTTTCTGCAACAGTGT  573

seq1  TTAACGCAGGTTAACTTAGTGGACACACATGCTCGCACTGCACGGTCCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGCAGGTTAACTTAGTGGACACACATGCTCGCACTGCACGGTCCAA  623

seq1  CATGTGGAAAAGATCACCGAGCACAGCATTAGGAGCTGGAAGGATCTTCG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGAAAAGATCACCGAGCACAGCATTAGGAGCTGGAAGGATCTTCG  673

seq1  GAGATAATCTGGCTCAGCCTTTTACTTTAGATGCGAGGAAAGTGAAGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATCTGGCTCAGCCTTTTACTTTAGATGCGAGGAAAGTGAAGCCC  723

seq1  AAAACTACAAATGGACTTGTCTGAGGCAACTCAACGGAATAGTGGGTCAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTACAAATGGACTTGTCTGAGGCAACTCAACGGAATAGTGGGTCAC  773

seq1  AGACCAAATTCCTTTTCACTTACTGATGTCTTAAGAACAAAGATGTAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAATTCCTTTTCACTTACTGATGTCTTAAGAACAAAGATGTAAGT  823

seq1  GTCCAGATGAGAGATCTGTAGACATCAGCCACTCATATATAAAGTGAATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGATGAGAGATCTGTAGACATCAGCCACTCATATATAAAGTGAATG  873

seq1  GAAAAAAACAAACAAACAAAAAGAAAAGAAAACAAGCAACGCCCCCACGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAACAAACAAACAAAAAGAAAAGAAAACAAGCAACGCCCCCACGT  923

seq1  TTTCGATTCTTACTAAGGAGGCAACTAGCTCCGCCCCCTTATAGGGATGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGATTCTTACTAAGGAGGCAACTAGCTCCGCCCCCTTATAGGGATGG  973

seq1  GTCCTTCCTCTGGATCCTGGTCTAGCCTAGTTTATATCATGCAGCCCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCCTCTGGATCCTGGTCTAGCCTAGTTTATATCATGCAGCCCAGG  1023

seq1  TTGGCCTCAAATTCCTAGAAATCTCCTAGAAGCAAACGGGAAGTATCAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCAAATTCCTAGAAATCTCCTAGAAGCAAACGGGAAGTATCAGG  1073

seq1  AAGGTAAAGGTGACTTTGGGATGAAGACATGGGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAGGTGACTTTGGGATGAAGACATGGGAATTC  1111