BAC Information

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BAC

Clone NameB6Ng01-121N02
Chromosome3 (Build37)3 (Build37)
Map Location 41,059,157 - 41,059,73783,379,792 - 83,380,840
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121N02.bB6Ng01-121N02.g
ACCDH925404DH925405
length9581,051
definitionDH925404|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N02, 5' end.DH925405|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,157 - 41,059,737)(83,379,792 - 83,380,840)
sequence
gaattctttgttcagctctgagccccatttttttaatggggttatttgat
tttctgaagtccaccttcttgagttctttatatatattggatattagtcc
cctatccgatttgggataggtaaagatcctttcccaatctgttggtggcc
tttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttt
atgaggtcccacttattgattcttgatcttacagcacaagccattgctgt
tctattcaggaaattttcccctgtacccatgtcttcgaggcttttcccta
ctttctcctctataagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacgaggagatagaaatggatcaattcg
cattcttctacatgataaccgccagttgtgccagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttagctctcttgtcaaagatcaag
tgaccataggtgtgtgggttcatctctgggtcttcaattctgttccattg
gtctacttgtctgtcactataccaataccatgcaaaaatatggaatgctt
cacgaatttgcgtgtcatccttgcgcaggggccatgctaatcttctctgt
atcgttccaattttagtatatgtgctgctgaagcgagcacctgactcgac
atattgagaacacagctttgacaaagttaggtctcgatcttttattattt
tactttatgttttttagcgacttttctcttatccagtaaaattattttag
gttcagtccaagaagcacttagtcttcgctggtcattgtgtaaagtaact
cccttcaggagttacaattcagggaaggaaagatggatagtccctaacca
tgagagtgcagtgaagaagcaactgagacccctgcgaagcagagacgtgc
ggctgtgt
gaattccttccacctctgagttagctaagaccaaaggagcttttcccaga
caggagagaaacattccaatctgttgacatcaagaggcccgtgggatcat
ccagggaagatcatggtagaggatgaagactgaggccttcctggtaaagg
ctttggaagaacatgaggtcatggggtcggtcaaggatgtaaattgagaa
aagcaacaagtactcctgctggctccttttgatgaagacatgccttggtc
accaaaaagcaaacacacatgcatgctcttttaaaatgccaaaacaaatg
caagattttcccttggaaaacagtatcaacactggcagacaattttgaag
gaagatgtggaggactgggcccgcctggtccatttatgctcagacactgc
ctcttcacacactaaagctactgttcattgttgggccagaactacaggcc
aagccttctgagctctttggctttcttaagggatgacccaacgcagtgcc
agctggcaatggatatgaacaaattggcagggtcccacctgctctaaatg
aatgcatgtgtatctctcagactctgggcaaatattcattggcctggcta
atgaaagagcttaggttggccagctcactcacaccaatggagcctaaatc
tcaaaaccagacaccctgagaggaccaaggagaaggactttcgttccccg
agtcctctgtagaatgactatcaaagaattgaatgcatttttgtggagag
aagctggtagggctgaaaaccacccctgcctccaaaccaacattgaaaca
taaatctatgtcctaaagaacatagctccctaaaaactgttatttaatct
cagaggaacggaaggtcttgacttacagttcatctcaaacctaaaatggg
atccaggccaaggaataaggaagatccattcccatgtcatgacacccaga
gccttgccagtatcccagtgctagatggggtgggatagaagctttacgct
gcactctctgctttggatccatgatcctggaatcatagacaaaccaggcc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059157_41059737
seq2: B6Ng01-121N02.b_45_627 (reverse)

seq1  TGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAATTG  50
      ||||||||| ||||||||||||||||||| |||||||||||| |||||||
seq2  TGCATGGTATTGGTATAGTGACAGACAAGTAGACCAATGGAACAGAATTG  50

seq1  AAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACAAG  100
      ||||| |||| | ||| |||||||||||||||||||||||||| ||||||
seq2  AAGACCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTTGACAAG  100

seq1  GGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTG  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTG  150

seq1  CTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCC  200
      |||||||||||||  ||||||||||||||||||||||||||||||| | |
seq2  CTGGCACAACTGGCGGTTATCATGTAGAAGAATGCGAATTGATCCATTTC  200

seq1  TATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATA  250
      |||||||| ||||||||||||||||||||||||| ||||||| |||||||
seq2  TATCTCCTCGTACTAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATA  250

seq1  AAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGA  300
      ||||||||||||||||||||||||||||||||||| ||||||||||| ||
seq2  AAACCAGAGACACTGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGA  300

seq1  AGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTG  350
      ||| ||||  ||||||||||| |||||| |||||||||||||||||||||
seq2  AGACATGGGTACAGGGGAAAATTTCCTGAATAGAACAGCAATGGCTTGTG  350

seq1  CTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTC  400
      |||||||||  |||||  | || ||||||||||| ||| |||||||||||
seq2  CTGTAAGATCAAGAATCAATAAGTGGGACCTCATAAAATTGCAAAGCTTC  400

seq1  TGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGATTG  449
      ||||| |||||||||||||||||||||||||||||| |||||||||||||
seq2  TGCAAAGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGATTG  450

seq1  GGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAATA  499
      ||||||||||||||||||||| ||||| ||||||||||||||||||||||
seq2  GGAAAGGATCTTTACCTATCCCAAATCGGATAGGGGACTAATATCCAATA  500

seq1  TATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATT  549
      ||||| ||||||||||||||||||| | ||||||||||||||||||||||
seq2  TATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATT  550

seq1  -AAAAAATGGGGCTCAGAGCTAAACAAAGAATT  581
       |||||||||||||||||||| |||||||||||
seq2  AAAAAAATGGGGCTCAGAGCTGAACAAAGAATT  583

seq1: chr3_83379792_83380840
seq2: B6Ng01-121N02.g_69_1119

seq1  GAATTCCTTCCACCTCTGAGTTAGCTAAGACCAAAGGAGCTTTTCCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCCACCTCTGAGTTAGCTAAGACCAAAGGAGCTTTTCCCAGA  50

seq1  CAGGAGAGAAACATTCCAATCTGTTGACATCAAGAGGCCCGTGGGATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGAAACATTCCAATCTGTTGACATCAAGAGGCCCGTGGGATCAT  100

seq1  CCAGGGAAGATCATGGTAGAGGATGAAGACTGAGGCCTTCCTGGTAAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAGATCATGGTAGAGGATGAAGACTGAGGCCTTCCTGGTAAAGG  150

seq1  CTTTGGAAGAACATGAGGTCATGGGGTCGGTCAAGGATGTAAATTGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGAAGAACATGAGGTCATGGGGTCGGTCAAGGATGTAAATTGAGAA  200

seq1  AAGCAACAAGTACTCCTGCTGGCTCCTTTTGATGAAGACATGCCTTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACAAGTACTCCTGCTGGCTCCTTTTGATGAAGACATGCCTTGGTC  250

seq1  ACCAAAAAGCAAACACACATGCATGCTCTTTTAAAATGCCAAAACAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAAGCAAACACACATGCATGCTCTTTTAAAATGCCAAAACAAATG  300

seq1  CAAGATTTTCCCTTGGAAAACAGTATCAACACTGGCAGACAATTTTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTTCCCTTGGAAAACAGTATCAACACTGGCAGACAATTTTGAAG  350

seq1  GAAGATGTGGAGGACTGGGCCCGCCTGGTCCATTTATGCTCAGACACTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTGGAGGACTGGGCCCGCCTGGTCCATTTATGCTCAGACACTGC  400

seq1  CTCTTCACACACTAAAGCTACTGTTCATTGTTGGGCCAGAACTACAGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACACACTAAAGCTACTGTTCATTGTTGGGCCAGAACTACAGGCC  450

seq1  AAGCCTTCTGAGCTCTTTGGCTTTCTTAAGGGATGACCCAACGCAGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTTCTGAGCTCTTTGGCTTTCTTAAGGGATGACCCAACGCAGTGCC  500

seq1  AGCTGGCAATGGATATGAACAAATTGGCAGGGTCCCACCTGCTCTAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCAATGGATATGAACAAATTGGCAGGGTCCCACCTGCTCTAAATG  550

seq1  AATGCATGTGTATCTCTCAGACTCTGGGCAAATATTCATTGGCCTGGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATGTGTATCTCTCAGACTCTGGGCAAATATTCATTGGCCTGGCTA  600

seq1  ATGAAAGAGCTTAGGTTGGCCAGCTCACTCACACCAATGGAGCCTAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAGCTTAGGTTGGCCAGCTCACTCACACCAATGGAGCCTAAATC  650

seq1  TCAAAACCAGACACCCTGAGAGGACCAAGGAGAAGGAC-TTCGTTCCCCG  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAAAACCAGACACCCTGAGAGGACCAAGGAGAAGGACTTTCGTTCCCCG  700

seq1  AGTCCTCTGTAGAATGACTATCAAAGAATTGAATGCATTTTTGTGGAGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGTAGAATGACTATCAAAGAATTGAATGCATTTTTGTGGAGAG  750

seq1  AAGCTGGTAGGGCTGAAAACCACCCCTGCCTCCAAAACCAACATTGAAAC  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGCTGGTAGGGCTGAAAACCACCCCTGCCTCC-AAACCAACATTGAAAC  799

seq1  ATAAATCTATGTCCTAAAGAACATAGCTCCCTAAAAACTGTTAATTAAAT  849
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  ATAAATCTATGTCCTAAAGAACATAGCTCCCTAAAAACTGTT-ATTTAAT  848

seq1  CTCAGAGGAACGGAAGGTC-TGAC-TACAG-TCATCTCAAACCTAAAAT-  895
      ||||||||||||||||||| |||| ||||| |||||||||||||||||| 
seq2  CTCAGAGGAACGGAAGGTCTTGACTTACAGTTCATCTCAAACCTAAAATG  898

seq1  GGAT-CAGGCCAAGGAATAAGGGAGATCCA-TCCCATGTCATGACACCCA  943
      |||| ||||||||||||||||| ||||||| |||||||||||||||||||
seq2  GGATCCAGGCCAAGGAATAAGGAAGATCCATTCCCATGTCATGACACCCA  948

seq1  GAGCCTTGCCAGTATCCCAGTGTCAGAT-GGGTGGGATAGAAGCTTTACC  992
      ||||||||||||||||||||||  |||| |||||||||||||||||||| 
seq2  GAGCCTTGCCAGTATCCCAGTGCTAGATGGGGTGGGATAGAAGCTTTACG  998

seq1  CTGCACTCTCTGCTTGGGATCCCATGATCCTGTGAATCATAAGGACAAAC  1042
      ||||||||||||||| |||| ||||||||||| ||||||||  |||||||
seq2  CTGCACTCTCTGCTTTGGAT-CCATGATCCTG-GAATCATA--GACAAAC  1044

seq1  CAGGCCC  1049
      |||||||
seq2  CAGGCCC  1051