BAC Information

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BAC

Clone NameB6Ng01-121N15
Chromosome10 (Build37)3 (Build37)
Map Location 16,550,076 - 16,550,41542,241,118 - 42,242,280
singlet/doubletsingletsinglet
Overlap geneLOC100039576
Upstream geneLOC382457, LOC546472
Downstream geneLOC627511, Cited2, Txlnb, LOC665321
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121N15.bB6Ng01-121N15.g
ACCDH925428DH925429
length2031,153
definitionDH925428|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N15, 5' end.DH925429|Mus musculus domesticus DNA, BAC clone: B6Ng01-121N15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,550,076 - 16,550,415)(42,241,118 - 42,242,280)
sequence
taccagaggtttaaggatgttgttacaaccaatgtttctcatattacaca
ataaatttaaaatggaagaaacaaacaaacaaaaaaagaagttggcctag
ttggccatcagtggaaagagaggcccattggtcgcgcaaactttatatgc
ctcagtacaggggaatgccagggccaagaagtgggagtgggtgggtaggg
gag
gaattccttgttttttcatggtttctcaagtattttgactgtgtcatctg
tttagataacattgctgttctcgctgtttgcagtagctttgtttgaggtc
tgaaatctatctagcttctcaagtgtgtttgtagaagtcagtattctcct
gtcatgtgggtctcaaggatcaaacctaggtcacctggctttatgtcctt
agccccaaactaaatattttgaagtttgtttttgcctttggaggatatgg
ggctggccaagagagattcgtgattttattatttttttattttattttat
ttttatacctatagagcccatcttcttttggtaatattatctttctaaat
tatagtgaaatctactgtaagcttttaagggtcagtttgtaaagtattta
tattaaaatggttgacatatttaaccatgtttaacttccttgaaatatca
aagatgtacatggagacattaattctgaaaccttggaaaatgatttcctc
tctcaaggagacttgactgtcaacaataattgctgtcactgaatcaagtt
tataatgaattaatcaaaatgcacatgaaatgtgtttatatttataccaa
atcacaagaaattattttgctatacattttacagaaatgtattctgaggt
ggaataagaggaaaaattgatgaaacaaatgatctgagaatatgagtgct
acatcatgtctctacctgaagtaaagaagcatagaatttcaccagcttca
gttgctataagatatttgagaatcaatttccttgcacttgcatattcttg
caaaccaatctaggcagccaaattttctcgttacactgtacataccatat
cgtaattctgggtagcaggattctgaattagagatgattccatgtgttat
tagcatgggtcccttcaaaaatattaaggtgtgattcctatcatacagaa
gaggcctcactaatctagcacagtgacaccctcctcttgatagtgcctgc
ctgtttatcatgtattaccatatataaaaatgattggtatatgggaacat
ccctctagctactctgtgtcattcagtgacccaacatttctcacactaag
gtctggttcagtttagtaaatatctcgacaatgtttagtggcgagaagaa
aat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_16550076_16550415
seq2: B6Ng01-121N15.b_121_255

seq1  AAACAAACAAACAAAAAAAGCCCTCTAAAACTATGCTCTCTCTGCAACCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAGATTTATCTTTAAAATGCTCAAAGTCAGCTATTGGATGGATCACAGGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCCCCAATGGAGGAGCTAGAGAAAGTAACCAAGGAGCTAAAGGGATCTGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  AACCCTATAGGTAGAACAACAATATGAACTAACCAGTATCCCCGGAGCTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTGACTCTAGC-TGCATATGTATCAGAAGATGGCCTAGTCGGCCATCACT  249
         |  | | |   || |   |  ||||| ||||||||| |||||||| |
seq2  ---AAACAAACAAACAAA---AAAAGAAGTTGGCCTAGTTGGCCATCAGT  44

seq1  GCAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGGG  299
      | ||||||||||||||||| |  |||||||||||||||| ||||||||||
seq2  GGAAAGAGAGGCCCATTGGTCGCGCAAACTTTATATGCCTCAGTACAGGG  94

seq1  GAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAG  340
      ||| ||||||||||| ||| |||||||||||||||||||||
seq2  GAATGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAG  135

seq1: chr3_42241118_42242280
seq2: B6Ng01-121N15.g_68_1220 (reverse)

seq1  ATTTTCTTTCCTC-CCATTAAACATTGTCTGAGATATTTCATAAACTGAA  49
      ||||||||  ||| ||| ||||||||||| |||||||||  ||||||| |
seq2  ATTTTCTT--CTCGCCACTAAACATTGTC-GAGATATTTACTAAACTG-A  46

seq1  ACCAGAAACCTTTAGTGTGAGAAAATTGTTGGTGTCACTGAAATGA-ACA  98
      ||||||   | |||||||||||||  |||||| ||||||| ||||| |||
seq2  ACCAGA---CCTTAGTGTGAGAAA--TGTTGG-GTCACTG-AATGACACA  89

seq1  GAGTAGCTAAGAAGGAATGTCACCATATATCCAAATACATTTTATATATG  148
      |||||||||   ||| ||||  |||||||  | |||   |||||||||| 
seq2  GAGTAGCTA--GAGGGATGTTCCCATATA--CCAATCATTTTTATATAT-  134

seq1  GGTAATACATGATAAAACAAGCAAGGCACTATCAAGAGGAGTGTGTGCAC  198
      ||||||||||||| ||||| || |||||||||||||||||| |||| |||
seq2  GGTAATACATGAT-AAACAGGC-AGGCACTATCAAGAGGAGGGTGT-CAC  181

seq1  TGTGCTAGATTAGTGA-GCATC-TCTGTATGATAGGAATCACAC--TAAT  244
      |||||||||||||||| || || |||||||||||||||||||||  ||||
seq2  TGTGCTAGATTAGTGAGGCCTCTTCTGTATGATAGGAATCACACCTTAAT  231

seq1  ATTTTTG-AGGGA-CCATACTAATAACACATGGAATCATCTCTAATTCAG  292
      ||||||| ||||| |||| |||||||||||||||||||||||||||||||
seq2  ATTTTTGAAGGGACCCATGCTAATAACACATGGAATCATCTCTAATTCAG  281

seq1  ACT-CTGCT-CCCAGAATTACGATATGGTATGTACAGTGTAACGAGAAAA  340
      | | ||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTGCTACCCAGAATTACGATATGGTATGTACAGTGTAACGAGAAAA  331

seq1  TTTGGCTGCCTAGATTGGTTTGCAAGAATTATGCAAGTGCAAGGAAATTG  390
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGGCTGCCTAGATTGGTTTGCAAGAA-TATGCAAGTGCAAGGAAATTG  380

seq1  ATTCTCAAATATCTTATAGCAACTGAAGCTGGTGAAATTCTATGCTTCTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCAAATATCTTATAGCAACTGAAGCTGGTGAAATTCTATGCTTCTT  430

seq1  TACTTCAGGTAGAGACATGATGTAGCACTCATATTCTCAGATCATTTGTT  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAGGTAGAGACATGATGTAGCACTCATATTCTCAGATCATTTGTT  480

seq1  TCATCAATTTTTCCTCTTATTCCACCTCAGAATACATTTCTGTAAAATGT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAATTTTTCCTCTTATTCCACCTCAGAATACATTTCTGTAAAATGT  530

seq1  ATAGCAAAATAATTTCTTGTGATTTGGTATAAATATAAACACATTTCATG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAATAATTTCTTGTGATTTGGTATAAATATAAACACATTTCATG  580

seq1  TGCATTTTGATTAATTCATTATAAACTTGATTCAGTGACAGCAATTATTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTGATTAATTCATTATAAACTTGATTCAGTGACAGCAATTATTG  630

seq1  TTGACAGTCAAGTCTCCTTGAGAGAGGAAATCATTTTCCAAGGTTTCAGA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGTCAAGTCTCCTTGAGAGAGGAAATCATTTTCCAAGGTTTCAGA  680

seq1  ATTAATGTCTCCATGTACATCTTTGATATTTCAAGGAAGTTAAACATGGT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATGTCTCCATGTACATCTTTGATATTTCAAGGAAGTTAAACATGGT  730

seq1  TAAATATGTCAACCATTTTAATATAAATACTTTACAAACTGACCCTTAAA  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTCAACCATTTTAATATAAATACTTTACAAACTGACCCTTAAA  780

seq1  AGCTTACAGTAGATTTCACTATAATTTAGAAAGATAATATTACCAAAAGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACAGTAGATTTCACTATAATTTAGAAAGATAATATTACCAAAAGA  830

seq1  AGATGGGCTCTATAGGTATAAAAATAAAATAAAATAAAAAAATAATAAAA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGGCTCTATAGGTATAAAAATAAAATAAAATAAAAAAATAATAAAA  880

seq1  TCACGAATCTCTCTTGGCCAGCCCCATATCCTCCAAAGGCAAAAACAAAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGAATCTCTCTTGGCCAGCCCCATATCCTCCAAAGGCAAAAACAAAC  930

seq1  TTCAAAATATTTAGTTTGGGGCTAAGGACATAAAGCCAGGTGACCTAGGT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATATTTAGTTTGGGGCTAAGGACATAAAGCCAGGTGACCTAGGT  980

seq1  TTGATCCTTGAGACCCACATGACAGGAGAATACTGACTTCTACAAACACA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTTGAGACCCACATGACAGGAGAATACTGACTTCTACAAACACA  1030

seq1  CTTGAGAAGCTAGATAGATTTCAGACCTCAAACAAAGCTACTGCAAACAG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAGCTAGATAGATTTCAGACCTCAAACAAAGCTACTGCAAACAG  1080

seq1  CGAGAACAGCAATGTTATCTAAACAGATGACACAGTCAAAATACTTGAGA  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAACAGCAATGTTATCTAAACAGATGACACAGTCAAAATACTTGAGA  1130

seq1  AACCATGAAAAAACAAGGAATTC  1163
      |||||||||||||||||||||||
seq2  AACCATGAAAAAACAAGGAATTC  1153