BAC Information

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BAC

Clone NameB6Ng01-121P06
Chromosome18 (Build37)3 (Build37)
Map Location 16,271,225 - 16,272,44571,831,223 - 71,831,751
singlet/doubletsingletsinglet
Overlap geneLOC100040202
Upstream geneKctd1, LOC100040151, Aqp4, LOC665473, Chst9, LOC670012, LOC100040551, EG225228
Downstream genePpia-ps18_172.1, EG665509, Cdh2, LOC665519, 1700001G01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121P06.bB6Ng01-121P06.g
ACCDH925505DH925506
length1,188870
definitionDH925505|Mus musculus domesticus DNA, BAC clone: B6Ng01-121P06, 5' end.DH925506|Mus musculus domesticus DNA, BAC clone: B6Ng01-121P06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,271,225 - 16,272,445)(71,831,223 - 71,831,751)
sequence
gaattcagttattgattcagtacttaactctgtgacatctgcctttgctc
tactcgttgaatgttcatatattgtgtatggctaagccttgaagtaatgc
tgaaaaaataacctttttgttgcctttctggagaaccttaccagttatta
aaatgagtataatatgactatttctacaaaaataaaatgttaatacattt
ttgtacagttattgaaaacaactgagctaagtctaaaaaaatggagaaag
ccagattcgttcattacagtgttcaataaaggtaagacacttacaatata
ttctaaatagcaaagtcttttatctaggaagcaagatcatgtcaattacc
aaactgcagtagtgtggcagtgctggaagatgctctggtggttcctggag
aagttggagaccttttcaaacttagtcagatactgataactacagtataa
gtatgcagaggtccactaaaggtctctctatatgtttttgttttattttg
tatcctccttttgtgaatgttaaagtgttcagtagttatgattgctgcat
gtcatattagcacatatttgtgaggtacaatgtaataatgttagatatat
gtgcacagtatagtgattgattcaagataattagcatacctaccacctta
aatgctgttcatgtctgcattgtctaaatttgttgatgattttaccatgc
acataaagcttgcttattactaccactccataacatttctcatctccctt
cctcacttgcctcgacctcctcttctctacaagtctcttcttcatgttaa
tgtccattttggagtctgagccagagtttaagggtgaacattgatgtgac
tacgagtttgagttctcccttggttgctggtgggttcatcagaagtacac
atttgaagacaaggacttcctcctctccatcatctacttgctacatcact
cactagtgacagtgtgacagccctgaaaacctgggcgctgtctgagcgaa
aagtcatggaaacttagtctcctggatcgtgcatcctgtaataggaatgt
tccaatgtcctacttagtggtaatgatctggggtgcttcctaaatgctta
tataatgctcctagatgtaatttgaactatagctaactgattctaggcga
tctgatcgaactcgtacggaaagctagtcactgcccta
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcgaatgctttttccgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggatttccatatattaaacc
atccctgcgtccctggaataaaacctacttggtcaggatgtatgatagct
ttaatgtgttcttggatagcgaaaattttattgagtatttttgcatctat
attcataagggaaattggtctgaagttctctatctttgttgaatctttct
gtggtttaggtatcagagtaattgtggcttcatagaatgagttgggtaga
gttccttctacttctattttgtggttgagtttgtgcagaactggaattag
atcttctttgaagttctgatagaactctgcactaaacccatctggtcctg
ggctttttttggttgggagactattaatgactgcttctatttctttaggg
gatataggactgtttagatcattaacctgatcctgatttaactttgtacc
tggtatctgtctagaaatttgtccatttcatccaggttttccagttttgt
tgagtatagcctgttgtagaaggatctgatggtgttttggatttcttcag
gatctgttgttatgtctcccttttgatttctgattttgttaattaggatg
ttgtccctgtgccctctagtgagtctagctaagggtttatctatcttgtt
gattttctcaaagaaccaactcctcgtttggtttatctttgaatagttct
tcttgtttccacttgggtgatttcaccccggagtttgatatttcctgccg
tctactctcttgggtgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_16271225_16272445
seq2: B6Ng01-121P06.b_48_1235 (reverse)

seq1  TAGGGCAGTGACTTAGCTATCCGTGCCCAAGGTCGGATCAAGGACTGCCT  50
      |||||||||||| ||||| |||||   | || || |||||  ||  ||||
seq2  TAGGGCAGTGAC-TAGCTTTCCGT--ACGAGTTC-GATCA--GATCGCCT  44

seq1  AGAATCTAAGTTAGCTATATGTCAAAATATCAATCCTTAGGAGCACTTAT  100
      ||||||  |||||||||||  ||||| ||   |||  |||||||| ||||
seq2  AGAATC--AGTTAGCTATAGTTCAAATTA--CATC--TAGGAGCA-TTAT  87

seq1  AATAAAGCAATATTAAGGGAAAGCA-CACAGATCCATTTACCAACTAAAG  149
      |   ||||   ||| |||  ||||| | ||||||   ||||| ||| |||
seq2  A--TAAGC---ATTTAGG--AAGCACCCCAGATC--ATTACC-ACT-AAG  126

seq1  TAGGACATTGGAACATTCCCTATACAGGATGCCACGATTCCAGGAGACTA  199
      |||||||||||||||||||   ||||||||| ||||| ||||||||||||
seq2  TAGGACATTGGAACATTCCTATTACAGGATG-CACGA-TCCAGGAGACTA  174

seq1  AGTTTCCATGAACTTTTCGCCTCCAGACAGCGCCCAGGTTTTCAGGGCCT  249
      |||||||||| |||||||||   |||||||||||||||||||||||| ||
seq2  AGTTTCCATG-ACTTTTCGC--TCAGACAGCGCCCAGGTTTTCAGGG-CT  220

seq1  GTCACACTTGTCACTAGTGGAGTGGATGTAGCAAGTAGATGATGGAGAGG  299
      ||||||| |||||||||| |||| ||||||||||||||||||||||||||
seq2  GTCACAC-TGTCACTAGT-GAGT-GATGTAGCAAGTAGATGATGGAGAGG  267

seq1  AGGAAGTCCTTGTCTTCAAATGTGTACTTCCTGATGAACCCACCAGCAAC  349
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGAAGTCCTTGTCTTCAAATGTGTACTT-CTGATGAACCCACCAGCAAC  316

seq1  CAAGGGAGAACTCAAACTCGTAGTCACATCAATGTTCACCCTTAAACTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGAACTCAAACTCGTAGTCACATCAATGTTCACCCTTAAACTCT  366

seq1  GGCTCAGACTCCAAAATGGACATTAACATGAAGAAGAGACTTGTAGAGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGACTCCAAAATGGACATTAACATGAAGAAGAGACTTGTAGAGAA  416

seq1  GAGGAGGTCGAGGCAAGTGAGGAAGGGAGATGAGAAATGTTATGGAGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGTCGAGGCAAGTGAGGAAGGGAGATGAGAAATGTTATGGAGTGG  466

seq1  TAGTAATAAGCAAGCTTTATGTGCATGGTAAAATCATCAACAAATTTAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATAAGCAAGCTTTATGTGCATGGTAAAATCATCAACAAATTTAGA  516

seq1  CAATGCAGACATGAACAGCATTTAAGGTGGTAGGTATGCTAATTATCTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAGACATGAACAGCATTTAAGGTGGTAGGTATGCTAATTATCTTG  566

seq1  AATCAATCACTATACTGTGCACATATATCTAACATTATTACATTGTACCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCACTATACTGTGCACATATATCTAACATTATTACATTGTACCT  616

seq1  CACAAATATGTGCTAATATGACATGCAGCAATCATAACTACTGAACACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAATATGTGCTAATATGACATGCAGCAATCATAACTACTGAACACTT  666

seq1  TAACATTCACAAAAGGAGGATACAAAATAAAACAAAAACATATAGAGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCACAAAAGGAGGATACAAAATAAAACAAAAACATATAGAGAGA  716

seq1  CCTTTAGTGGACCTCTGCATACTTATACTGTAGTTATCAGTATCTGACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGTGGACCTCTGCATACTTATACTGTAGTTATCAGTATCTGACTA  766

seq1  AGTTTGAAAAGGTCTCCAACTTCTCCAGGAACCACCAGAGCATCTTCCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAAAAGGTCTCCAACTTCTCCAGGAACCACCAGAGCATCTTCCAG  816

seq1  CACTGCCACACTACTGCAGTTTGGTAATTGACATGATCTTGCTTCCTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCACACTACTGCAGTTTGGTAATTGACATGATCTTGCTTCCTAGA  866

seq1  TAAAAGACTTTGCTATTTAGAATATATTGTAAGTGTCTTACCTTTATTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACTTTGCTATTTAGAATATATTGTAAGTGTCTTACCTTTATTGA  916

seq1  ACACTGTAATGAACGAATCTGGCTTTCTCCATTTTTTTAGACTTAGCTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTAATGAACGAATCTGGCTTTCTCCATTTTTTTAGACTTAGCTCA  966

seq1  GTTGTTTTCAATAACTGTACAAAAATGTATTAACATTTTATTTTTGTAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTTCAATAACTGTACAAAAATGTATTAACATTTTATTTTTGTAGA  1016

seq1  AATAGTCATATTATACTCATTTTAATAACTGGTAAGGTTCTCCAGAAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCATATTATACTCATTTTAATAACTGGTAAGGTTCTCCAGAAAGG  1066

seq1  CAACAAAAAGGTTATTTTTTCAGCATTACTTCAAGGCTTAGCCATACACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAAGGTTATTTTTTCAGCATTACTTCAAGGCTTAGCCATACACA  1116

seq1  ATATATGAACATTCAACGAGTAGAGCAAAGGCAGATGTCACAGAGTTAAG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGAACATTCAACGAGTAGAGCAAAGGCAGATGTCACAGAGTTAAG  1166

seq1  TACTGAATCAATAACTGAATTC  1221
      ||||||||||||||||||||||
seq2  TACTGAATCAATAACTGAATTC  1188

seq1: chr3_71831223_71831751
seq2: B6Ng01-121P06.g_410_934 (reverse)

seq1  TCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCAGGGGTGAAAT  50
      |||||||||| |||||||||||||||||| ||||||||| ||||||||||
seq2  TCACCCAAGA-GAGTAGACGGCAGGAAAT-ATCAAACTCCGGGGTGAAAT  48

seq1  CAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGA  100
      || |||||||||||||||||||||||||||||| || |||||||||||||
seq2  CACCCAAGTGGAAACAAGAAGAACTATTCAAAG-ATAAACCAAACGAGGA  97

seq1  GTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTC  147

seq1  ACTAAAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAA  200
      |||| ||||||||||||||| |||||||||||||||||||||||| ||||
seq2  ACTAGAGGGCACAGGGACAACATCCTAATTAACAAAATCAGAAATCAAAA  197

seq1  GGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCT  247

seq1  TCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGAC  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAACAGGCTATACTCAACAAAACTGGAAAACCTGGATGAAATGGAC  297

seq1  AAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGA  350
      |||||||| ||||||||||||||| ||||||| ||||||||||| ||| |
seq2  AAATTTCTAGACAGATACCAGGTA-CAAAGTTAAATCAGGATCAGGTTAA  346

seq1  CCATCTAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATA  400
        ||||||||||||| ||||| |||||||||||||||||||| |||||||
seq2  TGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAATA  396

seq1  GTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTC  446

seq1  TATCAGACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCA  500
      ||||||| |||||||||||||||||||||| |||||||||||||    ||
seq2  TATCAGAACTTCAAAGAAGATCTAATTCCAGTTCTGCACAAACTCAACCA  496

seq1  CAAAATAGAAGTAGAAGGTACTCTACCCA  529
      |||||||||||||||||| ||||||||||
seq2  CAAAATAGAAGTAGAAGGAACTCTACCCA  525