BAC Information

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BAC

Clone NameB6Ng01-122A03
Chromosome3 (Build37)
Map Location 135,723,897 - 135,724,827
singlet/doubletsinglet
Overlap geneBank1
Upstream geneLOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923
Downstream geneLOC100039477, LOC668868, Ppp3ca, LOC668870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122A03.b
ACCDH925547
length928
definitionDH925547|Mus musculus domesticus DNA, BAC clone: B6Ng01-122A03, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgaaagcaaggaaacacacaaagagaagagacaagcatagagag
agagagagagaaagagagagagagagagagagagagaaagagagagagag
agagagagagagagagagagagagagagagagagagagagagagagagag
agaccacagggagattgaatggagctaggcacaggcccctatggaaagcc
tttttttcctgatcagagtggccccatcttaacacttcccccaaacctcc
aaaacctgctataccaggactctgacttaccttaacctctattacagata
tgcctgacaacctcctaacccaaatattcccccaaccggaaaaacatatt
ctgtacccgaggccttatgcaatagttagaggtttttcttggtgaatatt
gacaactgaccaatgaagtccgatcttttccacttcatgtctgaccctaa
gctgtatattaaaacgggattactccgagaatccttggataccgggcatg
ccttattcaatattccaccatcaacgactacctattctttagccttctat
cccactctataatacagacacagaatctcatctgtcgaagaaaaaaaaaa
actgatggtctcatgttgacctttgtataagaggacattaacttatttca
tatgcatgcaaaaagtggcttgcaaaagagataaatctttccttcatgag
aaatttttcgtgattgcaatatccgactgaaggttgtgggaagcaacctt
aacagtgtgagaaatcttttctagatgacatccgtatatcctatttgact
attattgaacatgaagatggatcaatatgctcttcccaatgtcagaaatt
ctatgaatcacatatagaggaaaagcttaagtttttcatctaatatctag
tcagagtctgtggagagctggagaccat
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_135723897_135724827
seq2: B6Ng01-122A03.b_45_972 (reverse)

seq1  ATGGTCTCCAGCTCTTCACAGACTCTGACAAGATATTAGTTAATACCCTT  50
      ||||||||||||||| ||||||||||||| ||||||||| | | |  |||
seq2  ATGGTCTCCAGCTCTCCACAGACTCTGACTAGATATTAGATGAAAAACTT  50

seq1  AAGCTTTTCCTCTATATGTGATTCATATTTTTTTCTGACATTGGGAAGAT  100
      |||||||||||||||||||||||||||    |||||||||||||||||| 
seq2  AAGCTTTTCCTCTATATGTGATTCATA-GAATTTCTGACATTGGGAAGAG  99

seq1  TATATTGATCCATCTTCATGTTCAATAATAGTTAAATATGATATACTGAT  150
       ||||||||||||||||||||||||||||||| ||||| ||||||| |||
seq2  CATATTGATCCATCTTCATGTTCAATAATAGTCAAATAGGATATACGGAT  149

seq1  TTCATCTAGAAAAGATTTCTTATACTTTTAATGTTGCTTTCCACAACTTT  200
       ||||||||||||||||||| | ||| |||| ||||||| ||||||| ||
seq2  GTCATCTAGAAAAGATTTCTCACACTGTTAAGGTTGCTTCCCACAACCTT  199

seq1  CACTTGGTTATTTTAATTATTTAAAAATTTCTCATGTTATTTTTTATTTA  250
      || | || ||||  ||| |   ||||||||||||||  |      |||||
seq2  CAGTCGGATATTGCAATCA-CGAAAAATTTCTCATG-AAGGAAAGATTTA  247

seq1  TCTCTTTTGGAAGCCACCTTTTGCATGCTTATGAAATATGTTAATGTCCT  300
      ||||||||| ||||||| |||||||||| ||||||||| |||||||||||
seq2  TCTCTTTTGCAAGCCACTTTTTGCATGCATATGAAATAAGTTAATGTCCT  297

seq1  CTTATACAAAGGTCAACATGAGACCATCAGTTTTTTTTTTTCTTCGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACAAAGGTCAACATGAGACCATCAGTTTTTTTTTTTCTTCGACAG  347

seq1  ATGAGATTCTGTGTCTTTATTATAGATTGCTATTTATTGTTAAATAATTT  400
      |||||||||||||||| ||||||||| ||  ||  |  | |||| |||  
seq2  ATGAGATTCTGTGTCTGTATTATAGAGTGGGATAGAAGGCTAAAGAATAG  397

seq1  TTAGTCGTTTTTGGTGGAATATTGAATATTGCATGTCCTGTATCCTTGGA  450
       ||||||||  |||||||||||||||||  ||||| || ||||||  |||
seq2  GTAGTCGTTGATGGTGGAATATTGAATAAGGCATGCCCGGTATCCAAGGA  447

seq1  TTCTCTGTGTAATCTTGTTTTAATATACAGTTTAGCTTCTGACATGAACT  500
      ||||| | ||||||  |||||||||||||| ||||  || |||||||| |
seq2  TTCTCGGAGTAATCCCGTTTTAATATACAGCTTAGGGTCAGACATGAAGT  497

seq1  TCTATAGATCTGACTTCATTTTTTTTTTGTCAATATTCACCAAGAAAAAC  550
         | ||||| |||||||||  |   ||||||||||||||||||||||||
seq2  GGAAAAGATCGGACTTCATTGGTCAGTTGTCAATATTCACCAAGAAAAAC  547

seq1  CTCTAACTATTGCATAAGGCCTCGGGTACAGACTATGTTTTTCCTGTTGG  600
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  CTCTAACTATTGCATAAGGCCTCGGGTACAGAATATGTTTTTCCGGTTGG  597

seq1  TTGTATATTTGGGTTTTGAGGTTGTCAGGCATATCTTTAATAGAGGTTAC  650
        | |||||||||||  ||||||||||||||||||| |||||||||||| 
seq2  GGGAATATTTGGGTTAGGAGGTTGTCAGGCATATCTGTAATAGAGGTTAA  647

seq1  TGTAAGTCAGAGTCCTGGTATAGCAGGTTTTGGAGGTTTCTGGGAAGTGT  700
       ||||||||||||||||||||||||||||||||||||||  |||||||||
seq2  GGTAAGTCAGAGTCCTGGTATAGCAGGTTTTGGAGGTTTGGGGGAAGTGT  697

seq1  TAAGATGGGGCCACTCTGATCAGGAAAAAAAGGCTTTCCCTAGGGGCCTC  750
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  TAAGATGGGGCCACTCTGATCAGGAAAAAAAGGCTTTCCATAGGGGCCTG  747

seq1  TGCCTAGCTCCATTCAATCTCCCTCTGGTCTCTCTCTCTCTCTCTCTCTC  800
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCCTAGCTCCATTCAATCTCCCTGTGGTCTCTCTCTCTCTCTCTCTCTC  797

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTC  847

seq1  TCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTATGCTTGTCTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTATGCTTGTCTCTT  897

seq1  CTCTTTGTGTGTTTCCTTGCTTTCAGAATTC  931
      |||||||||||||||||||||||||||||||
seq2  CTCTTTGTGTGTTTCCTTGCTTTCAGAATTC  928