BAC Information

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BAC

Clone NameB6Ng01-122B02
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,169 - 41,059,73750,438,929 - 50,439,086
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122B02.bB6Ng01-122B02.g
ACCDH925592DH925593
length979158
definitionDH925592|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B02, 5' end.DH925593|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,169 - 41,059,737)(50,438,929 - 50,439,086)
sequence
gaattctttattcagctctgagccccattttttaatggggttattcgatt
ttctggagcccaccttcttgagttctttatatatatattggaaattagtc
ccctatccaatttgggataagtaaagatcctttcccaatctcttggtggt
ctttttgtcttattgacggtgtcttttgccttgcagaagctttgtagttt
catgaggtcccatttgtcaattctctatcttacagcacaagccattgctc
ttctattcaggaatttttcccctgtgcccatttcttcaaggcttttcccc
actttctcctctataagtttcagtgtctctggtattatgtggagttcctt
gatccacttagatttgaccttagtacaaggagataggaatggatcaattt
gcattcttctacatgataacaaccagttgtgccagcaccatttgttgaaa
atgctgtcttttttccactggatggttttagctcccttgtcgaagatcaa
gtgaccataggtgtgtgggttcatttctgggtcttcaattctattccatt
ggtctacttgtctgtcactataccagtaccatgcagtttttatcacaatt
gctatgtagtaaagctttaggtcaggcatggtgattccaccagaggtact
tttatccttgagaagagcttttgctatcctaggttttttgttattccaga
tgaatttgcagattgctctttctaattcgttgaagaattgagttggaatt
ttgatggggattgcattgaatctgtagattgcttttggcaagatagccat
ttttacaatgttgatcctgccaatccatgagcatgggagatctttccatc
ttctgagatcttctttaatttctttcttcagagacttgaagtcttatcgt
acagatcgttcacttccttagtagagtcacgccaagatatttatatattt
gtgactattgagaggtgtgtttccctaat
tccatgttccttcttcttagagattttgctatagtagttttcacccttca
aaccattcattattttcaatttctttatttttactatactgtgtgcatgc
acatatgcgtgtgtgtctgtgtacatgcattcgtgtgtgtgtgtgtgtgt
gtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059169_41059737
seq2: B6Ng01-122B02.b_47_618 (reverse)

seq1  GTATAGTGACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAA  50
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  GTATAGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGACCCAGAAA  50

seq1  CGAATCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACC  100
       ||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACC  100

seq1  ATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTG  150

seq1  GTTGTTATCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTA  200
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  GTTGTTATCATGTAGAAGAATGCAAATTGATCCATTCCTATCTCCTTGTA  200

seq1  CTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACA  250
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  CTAAGGTCAAATCTAAGTGGATCAAGGAACTCCACATAATACCAGAGACA  250

seq1  CTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCAC  300
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  CTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAAATGGGCAC  300

seq1  AGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGA  350
      |||||||||||||||| |||||| ||||||||||||||||||||||| ||
seq2  AGGGGAAAAATTCCTGAATAGAAGAGCAATGGCTTGTGCTGTAAGATAGA  350

seq1  GAATAGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAA  400
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTGACAAATGGGACCTCATGAAACTACAAAGCTTCTGCAAGGCAAAA  400

seq1  GACACCGTCAATAAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTT  449
      |||||||||||||||||||||||  |||||| ||||||||||||||||||
seq2  GACACCGTCAATAAGACAAAAAGACCACCAAGAGATTGGGAAAGGATCTT  450

seq1  TACCTATCCTAAATCAGATAGGGGACTAATATCCA--ATATATATCAAGA  497
      ||| ||||| ||||  |||||||||||||| ||||  |||||||| ||||
seq2  TACTTATCCCAAATTGGATAGGGGACTAATTTCCAATATATATATAAAGA  500

seq1  ACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGG  547
      ||||||||||||||  ||||||||||| ||||||||||||||||||||||
seq2  ACTCAAGAAGGTGGGCTCCAGAAAATCGAATAACCCCATTAAAAAATGGG  550

seq1  GCTCAGAGCTAAACAAAGAATT  569
      |||||||||| || ||||||||
seq2  GCTCAGAGCTGAATAAAGAATT  572

seq1: chr2_50438929_50439086
seq2: B6Ng01-122B02.g_73_230 (reverse)

seq1  ACACACACACACACACACACACACACGAATGCATGTACACAGACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACGAATGCATGTACACAGACACACAC  50

seq1  GCATATGTGCATGCACACAGTATAGTAAAAATAAAGAAATTGAAAATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTGCATGCACACAGTATAGTAAAAATAAAGAAATTGAAAATAAT  100

seq1  GAATGGTTTGAAGGGTGAAAACTACTATAGCAAAATCTCTAAGAAGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGTTTGAAGGGTGAAAACTACTATAGCAAAATCTCTAAGAAGAAGG  150

seq1  AACATGGA  158
      ||||||||
seq2  AACATGGA  158