BAC Information

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BAC

Clone NameB6Ng01-122C01
Chromosome3 (Build37)
Map Location 45,320,371 - 45,321,463
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC676484, LOC100039296, Pcdh10, LOC100039282
Downstream geneLOC433580, LOC671801, EG241989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122C01.bB6Ng01-122C01.g
ACCDH925638DH925639
length1,2091,082
definitionDH925638|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C01, 5' end.DH925639|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgctggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcactgtctctggctttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtgtttctatcaccggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttcggggtcttcaattctattccattgg
tctactggtctgtctgtataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccacaggttcttt
tatccttgagaagagtttttgctgtcctaggatttttattattccagatg
aatttgcaaattgctccttctaattcgctgaagaaatgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatcgccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcaaagatttgaagttttatcatac
agatctttcacttccttagttagagtcacgccgagatatttatattattt
gtgactattgagaaggtgttgtttccctatttctttctcagctgtttatt
atttgtatagagaaagccattgactgttgagttattttatatcagctatc
acgagctgtttatcagttaggagttctctgtagaatttttctgtcactta
atattactatccaatcatctgcaaatgaacttgactcccttccagtgtat
ctgatccttgtggcgatgtctggctataactcatgagatacatggtgaat
aatgctcag
gaattctgatatctaagtaaggtgggttttcccagcattgagatgtctgt
ggtcaatgtgaatcttgagcatggaagagtgggatcaccacgatctttcc
tttcctttccagcctcgaaagagggaaagactcaatggcccattctgacc
agggaataaaagtcaagcagtcctctcatttattacccacaagaaatgct
gaaacaaattcaaagaggaattattctcagtaagagacagctgaagctct
attactgaaaataaatgtacagaatattgttgcagccatgcctcaacaaa
aaaatatactcttttgaaataagatttattttgtgtataaatggtttgtt
ttataacttcaatttatacccattttttacatttattacttaagagggac
ttttatacatggatataatgtattttgatcccattaattcctcattacac
tcctctctttttgtataccttcatttgacatgttcatgacgactttatat
acttgataattattctgcaacccacaatgaccaattaaagttgcttagac
tagctgaatatgtgggactgtcctatggagcatagctgacctgcaaaaaa
aaacccacctgcctaaaaagaaaatgaacttcccttcaactttatcaccc
atcatttttaccacttctttctgtttttaattaaaaggcacgatgtcaac
aatagttacttcttcctctttttacagtatcttaattctctaatcccatt
tctatttgacagtttgactcagcaattactgcttaggattgcatttgtca
agtctggaacatttacatgcttctttgctcaatgtcttaggaattactta
agattgctcttaagccatggccatgactccatcattgccttaggcattct
gtgaggcctgatttgtattctatatctgaatataacagcttaactcttta
gcaatgattatactctttgagtgattcttctcatagctgatctcttcacg
tagtagatttggatcatgagtgatttgtagatgctatctgcagggatcat
tatgttggatacttagagaaatttcctatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_45320371_45321463
seq2: B6Ng01-122C01.g_66_1147

seq1  GAATTCTGATATCTAAGTAAGGTGGGTTTTCCCAGCATTGAGATGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATATCTAAGTAAGGTGGGTTTTCCCAGCATTGAGATGTCTGT  50

seq1  GGTCAATGTGAATCTTGAGCATGGAAGAGTGGGATCACCACGATCTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAATGTGAATCTTGAGCATGGAAGAGTGGGATCACCACGATCTTTCC  100

seq1  TTTCCTTTCCAGCCTCGAAAGAGGGAAAGACTCAATGGCCCATTCTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCCAGCCTCGAAAGAGGGAAAGACTCAATGGCCCATTCTGACC  150

seq1  AGGGAATAAAAGTCAAGCAGTCCTCTCATTTATTACCCACAAGAAATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATAAAAGTCAAGCAGTCCTCTCATTTATTACCCACAAGAAATGCT  200

seq1  GAAACAAATTCAAAGAGGAATTATTCTCAGTAAGAGACAGCTGAAGCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATTCAAAGAGGAATTATTCTCAGTAAGAGACAGCTGAAGCTCT  250

seq1  ATTACTGAAAATAAATGTACAGAATATTGTTGCAGCCATGCCTCAACAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGAAAATAAATGTACAGAATATTGTTGCAGCCATGCCTCAACAAA  300

seq1  AAAATATACTCTTTTGAAATAAGATTTATTTTGTGTATAAATGGTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACTCTTTTGAAATAAGATTTATTTTGTGTATAAATGGTTTGTT  350

seq1  TTATAACTTCAATTTATACCCATTTTTTACATTTATTACTTAAGAGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACTTCAATTTATACCCATTTTTTACATTTATTACTTAAGAGGGAC  400

seq1  TTTTATACATGGATATAATGTATTTTGATCCCATTAATTCCTCATTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACATGGATATAATGTATTTTGATCCCATTAATTCCTCATTACAC  450

seq1  TCCTCTCTTTTTGTATACCTTCATTTGACATGTTCATGACGACTTTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTTTTGTATACCTTCATTTGACATGTTCATGACGACTTTATAT  500

seq1  ACTTGATAATTATTCTGCAACCCACAATGACCAATTAAAGTTGCTTAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATAATTATTCTGCAACCCACAATGACCAATTAAAGTTGCTTAGAC  550

seq1  TAGCTGAATATGTGGGACTGTCCTATGGAGCATAGCTGACCTGCAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAATATGTGGGACTGTCCTATGGAGCATAGCTGACCTGCAAAAAA  600

seq1  AAACCCACCTGCCTAAAAAGAAAATGAACTTCCCTTCAACTTTATCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCACCTGCCTAAAAAGAAAATGAACTTCCCTTCAACTTTATCACCC  650

seq1  ATCATTTTTACCACTTCTTTCTGTTTTTAATTAAAAGGCACGATGTCAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTTACCACTTCTTTCTGTTTTTAATTAAAAGGCACGATGTCAAC  700

seq1  AATAGTTACTTCTTCCTCTTTTTACAGTATCTTAATTCTCTAATCCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTACTTCTTCCTCTTTTTACAGTATCTTAATTCTCTAATCCCATT  750

seq1  TCTATTTGACAGTTTGACTCAGCAATTACTGCTTAGGATTGCATTTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGACAGTTTGACTCAGCAATTACTGCTTAGGATTGCATTTGTCA  800

seq1  AGTCTGGAACATTTACATGCTTCTTTGCTCAATGTCTTAGGAATTACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGAACATTTACATGCTTCTTTGCTCAATGTCTTAGGAATTACTTA  850

seq1  AGATTGCTCTTAAGCCATGGCCATGACTCCATCATTGCCTTAGGCATTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCTCTTAAGCCATGGCCATGACTCCATCATTGCCTTAGGCATTCT  900

seq1  GTGAGGCCTGATTTGTATTCTATATCTGAATATTAACAGCTTAACTCTTT  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGAGGCCTGATTTGTATTCTATATCTGAATA-TAACAGCTTAACTCTTT  949

seq1  AGCAAATGAATTATACTCTTTGAAGTGATTCTTCTCATAGCTGGATCTCT  1000
      ||| |||| ||||||||||||| ||||||||||||||||||| |||||||
seq2  AGC-AATG-ATTATACTCTTTG-AGTGATTCTTCTCATAGCT-GATCTCT  995

seq1  TCACGTTAGTAGATTTGGAATCATGAGTGATTTGTAGATGCTATCTGCAG  1050
      ||||| |||||||||||| |||||||||||||||||||||||||||||||
seq2  TCACG-TAGTAGATTTGG-ATCATGAGTGATTTGTAGATGCTATCTGCAG  1043

seq1  GGATCCATTAATGTTGGATACTTAGAGAAAATTTCCCTATTTT  1093
      |||| |||| ||||||||||||||||||||  || ||||||||
seq2  GGAT-CATT-ATGTTGGATACTTAGAGAAA--TTTCCTATTTT  1082