BAC Information

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BAC

Clone NameB6Ng01-122C07
Chromosome3 (Build37)
Map Location 133,805,638 - 133,806,905
singlet/doubletsinglet
Overlap genenone
Upstream gene9130221D24Rik, Ppa2, E130014J05Rik, EG620205, LOC100039168
Downstream geneLOC668862, LOC100039199, Cxxc4, Ppia-ps3_1390.1, LOC100039234, Tacr3, LOC229837, LOC100039290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122C07.bB6Ng01-122C07.g
ACCDH925648DH925649
length1,2311,202
definitionDH925648|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C07, 5' end.DH925649|Mus musculus domesticus DNA, BAC clone: B6Ng01-122C07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataatgaataattattttaacaaaatttagtaatgatggtataa
tctactctggctttaaatttatttacacagctagtagcaacagtaggtag
catgcaaaaataaattttcatttcagtagagagccagttttcagaataaa
gtagatagaataatcatttttctaatggctgacttataaacatagacgtt
ttgtgagccaaggttcaagtgtgagaactctctattgtgcctcaagccct
cttctagtactgtggcccatgaaatataagatgctcatcagtgttcctat
cttacagagcccctcatagctcccatctcatcacttccatgtcccatctc
attccaggcaaacacctgtattttctcagggagtttctaacattcccctc
tttcaggaataaagacttttctcctgtagttagtgatgacacaataggag
ataacccaagtatagcggacacatcatattctatgatatactacatccta
ttattagagaaattttcttccaaacaattcagctatgattgttgcatcat
aagaaaactgagataatattaacaaaaaaatatggagaagagaatacaag
aatagattttgatatacttgaaaagcctccctttggtgtgttcaaaatca
gtaaataatgaagcagattagagctgaaccacacagggcagttcccagaa
caataagcttatgtctttcataagtgacatgtatcccttgtgttccctct
gagctaaatggagtaaatcaccccacgactgtccactctcttcacaatcg
tcatttcatcttacagttttattttcacaagcaacggaattatcattttg
ggattctatgacttctggtaattattcaaaaactcaacaaatgtataacc
ctctaattacatccttctcctaagctactagtctcccctatgttcattct
acttcctgcttttttctttacatctaacagagtttagaatgaaattcagt
aaccgtgccaggggttgtaaaacgagatatgaaatccacactgatgagcg
ctggtcatgttgtttctgtggctctctcgtgacctcatctccctgattga
tttggagatagttatgttaattcttttccattcaccacctggaaaactac
ctttttctgattcctcctgactgctatgttgatgttcctcggattctata
tctcaggaaccctccaggcactatgtagctc
gaattctttgtctatttctatacatatgccttatcagtatcagacatata
ttttccaaagatgttcttcacgtttgtgacttctacttttattaccttaa
gaataactttcacagagtaaaagttttatcagtgatgcagctgtgtaggg
atgatgcattggttgttgaatatgagaattcaaccaactcagtgctacta
agatgcactccagggcttttctgtagatgtttagcaatttccttcttgct
tatggtactgctactcgctttgagatgggttttatgcaagctgtgagatc
tgagtttacattcatgctcctgcaagctcctatcaaatcctgatagtttt
attgatgagtgtgtctactcttttggaaatcccttttctgtataaaaata
agcttatatgagggtcagtttctgagtcctctactctgattctattgatt
gttttcatcaatactgcattatctttttggagaagggttgtttctttgtt
gtttggtttggttttctgagacaaagtttccctatgacaggcttgctttg
gacttctatgtagcctaggctggtcccaaacttgcctggatctcccaagg
gataggatagtgcactgcactgcactatcttgattcatgtgggttttttt
tgaaaattgaataagctttgttttccaatcttgttccactttagtattgt
gttagattattctgtgttatttgccaacataaacaaactttagactaaat
ttggtgatatccataatgtaacttgtcagaatttcgattgggatttcatt
taatgtgtgaataaatatggggagaacatttttaacagactctaactctc
cttgaaaacaaaatgcctggcatttactagaacttctgtttgtcagagtt
tataattttttatgctggtttctattagccagctatatctgtgatttctg
ctaatttaaatgatcaatgggtctacttctactatatgcataatatttat
ctatcttatttttcagtctattctgatgcccaaatattttataggaccac
agattgctattatcaagaacttcctacaccctaccggctgacgggaactg
ttatattaagagatgtctatgaaactattcatgatggcattaaactccat
tataattgtaccatagcaattgacaatctaccttaccagtgtctcctctc
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_133805638_133806905
seq2: B6Ng01-122C07.b_46_1276

seq1  GAATTCATAATGAATAATTATTTTAACAAAATTTAGTAATGATGGTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATGAATAATTATTTTAACAAAATTTAGTAATGATGGTATAA  50

seq1  TCTACTCTGGCTTTAAATTTATTTACACAGCTAGTAGCAACAGTAGGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTGGCTTTAAATTTATTTACACAGCTAGTAGCAACAGTAGGTAG  100

seq1  CATGCAAAAATAAATTTTCATTTCAGTAGAGAGCCAGTTTTCAGAATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAAAATAAATTTTCATTTCAGTAGAGAGCCAGTTTTCAGAATAAA  150

seq1  GTAGATAGAATAATCATTTTTCTAATGGCTGACTTATAAACATAGACGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGAATAATCATTTTTCTAATGGCTGACTTATAAACATAGACGTT  200

seq1  TTGTGAGCCAAGGTTCAAGTGTGAGAACTCTCTATTGTGCCTCAAGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCCAAGGTTCAAGTGTGAGAACTCTCTATTGTGCCTCAAGCCCT  250

seq1  CTTCTAGTACTGTGGCCCATGAAATATAAGATGCTCATCAGTGTTCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGTACTGTGGCCCATGAAATATAAGATGCTCATCAGTGTTCCTAT  300

seq1  CTTACAGAGCCCCTCATAGCTCCCATCTCATCACTTCCATGTCCCATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGAGCCCCTCATAGCTCCCATCTCATCACTTCCATGTCCCATCTC  350

seq1  ATTCCAGGCAAACACCTGTATTTTCTCAGGGAGTTTCTAACATTCCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGGCAAACACCTGTATTTTCTCAGGGAGTTTCTAACATTCCCCTC  400

seq1  TTTCAGGAATAAAGACTTTTCTCCTGTAGTTAGTGATGACACAATAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAATAAAGACTTTTCTCCTGTAGTTAGTGATGACACAATAGGAG  450

seq1  ATAACCCAAGTATAGCGGACACATCATATTCTATGATATACTACATCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCAAGTATAGCGGACACATCATATTCTATGATATACTACATCCTA  500

seq1  TTATTAGAGAAATTTTCTTCCAAACAATTCAGCTATGATTGTTGCATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGAGAAATTTTCTTCCAAACAATTCAGCTATGATTGTTGCATCAT  550

seq1  AAGAAAACTGAGATAATATTAACAAAAAAATATGGAGAAGAGAATACAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTGAGATAATATTAACAAAAAAATATGGAGAAGAGAATACAAG  600

seq1  AATAGATTTTGATATACTTGAAAAGCCTCCCTTTGGTGTGTTCAAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATTTTGATATACTTGAAAAGCCTCCCTTTGGTGTGTTCAAAATCA  650

seq1  GTAAATAATGAAGCAGATTAGAGCTGAACCACACAGGGCAGTTCCCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAATGAAGCAGATTAGAGCTGAACCACACAGGGCAGTTCCCAGAA  700

seq1  CAATAAGCTTATGTCTTTCATAAGTGACATGTATCCCTTGTGTTCCCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGCTTATGTCTTTCATAAGTGACATGTATCCCTTGTGTTCCCTCT  750

seq1  GAGCTAAATGGAGTAAATCACCCCACGACTGTCCACTCTCTTCACAATCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAAATGGAGTAAATCACCCCACGACTGTCCACTCTCTTCACAATCG  800

seq1  TCATTTCATCTTACAGTTTTATTTTCACAAGCAACGGAATTATCATTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCATCTTACAGTTTTATTTTCACAAGCAACGGAATTATCATTTTG  850

seq1  GGATTCTATGACTTCTGGTAATTATTCAAAAACTCAACAAATGTATAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTATGACTTCTGGTAATTATTCAAAAACTCAACAAATGTATAACC  900

seq1  CTCTAATTACATCCTTCTCCTAAGCTACTAGTTCTCCCCTATGTTCATTC  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTCTAATTACATCCTTCTCCTAAGCTACTAG-TCTCCCCTATGTTCATTC  949

seq1  TACTTCCTGCTTTTTTTCTTTACATCTTAACAGAGTTTTAGGAATGAAAT  1000
      |||||||||| ||||||||||||||| |||||||||||   |||||||||
seq2  TACTTCCTGC-TTTTTTCTTTACATC-TAACAGAGTTT--AGAATGAAAT  995

seq1  TCAGTAACCGTGCCAGGGTTTGGTAAAAACGAGATATGAAAATCCACACT  1050
      |||||||||||||||||| |||   ||||||||||||| |||||||||||
seq2  TCAGTAACCGTGCCAGGGGTTG--TAAAACGAGATATG-AAATCCACACT  1042

seq1  GATGGAAGCGGCCTGGTCATGTTGTTTCTGTGCTTCTCTCCGTGACCTCA  1100
      ||||  ||||  ||||||||||||||||||||  ||||| ||||||||||
seq2  GATG--AGCG--CTGGTCATGTTGTTTCTGTGGCTCTCT-CGTGACCTCA  1087

seq1  TCTCCCTGATTGATTTTGGAGATTAGGTTTTATGTTTAAATATCTTTCTC  1150
      ||||||||||||| |||||||| |||   |||||||  ||| ||||| ||
seq2  TCTCCCTGATTGA-TTTGGAGA-TAG---TTATGTT--AAT-TCTTT-TC  1128

seq1  ATTTCACCTTCACCTGGAAAACATCACTTTTTTCTGTAGTTCACCTTTCC  1200
        |||||   ||||||||||||   || ||||||||          ||||
seq2  CATTCAC---CACCTGGAAAAC--TACCTTTTTCTG---------ATTCC  1164

seq1  T--TGACTTGCTCATGTTGTGATGTTCCTCCGTATTTCTATATCTC-TGA  1247
      |  |||| |||| ||||  ||||||||||| |   |||||||||||  ||
seq2  TCCTGAC-TGCT-ATGT--TGATGTTCCTCGG--ATTCTATATCTCAGGA  1208

seq1  GACCTCCAGGCAC--TTTAGCTC  1268
        |||||||||||  | ||||||
seq2  ACCCTCCAGGCACTATGTAGCTC  1231