BAC Information

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BAC

Clone NameB6Ng01-122D04
Chromosome3 (Build37)
Map Location 41,720,471 - 41,871,906
singlet/doubletdoublet
Overlap geneLOC666031
Upstream gene3110057O12Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
Downstream geneLOC100039204, LOC100039219
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122D04.bB6Ng01-122D04.g
ACCDH925688DH925689
length8831,230
definitionDH925688|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D04, 5' end.DH925689|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,720,471 - 41,721,350)(41,870,645 - 41,871,906)
sequence
gaattccactatagtactatccttggccccaatagggccacagtattagc
aattacagatacaatttctttaatgtgtattttaaaatttgacacatact
tgctgacttcacacagccacagccctctagtgacatgaacttggcctgca
cttcagaaggaaatttccagagaggccaagcataaagtggtttgcttaaa
aatgagcatataaattgaactagatttctcccatggtttaggttcatctt
ggtttttaaaaacttttggaaagtgcgtaaagtttttaagaccacatatt
ctataatgtcaagtgtcggcagggtttttgttcaggggagaatataggtt
ttaagagaataaggataggcaaattcttgcttggattttaggcattcaat
ctgttaacaactgaagctgtgatggttccagttatgaggtgtagctttcc
aacagaataaagggtaatatttaacatgaaagcaatagttggtattatgt
atctgggaggcagggtggtcaatggcagagctagggtggccagactgcat
tctgtcatgcctgcaaagtctctcccttgctcacactcctctaagaagaa
aagagcagtctaaggacatgttagccattccattacttgtcaacaactag
gtaatgctttgctagggctgggtgtacagaagaaatgaagaaacaatgat
caccaccacacagttcacaatgtctgtttctgtcaatgcgccaacaatca
atacttaagaaaagtgtgtgtggtggggggcagggggaggtggaactcat
gctaggttgaaattcagaagaccatttgaggaagacattttagagagcca
gttctctttttcatgtaggcccagagtgttgac
gaattcatttgtgcaggctctcagatgttccagggattacggaaaaggga
aattctgagctcttctcagactggaatctagaaaagtcctgaagtagaaa
atccttaacatcaaattggacatgcccttttctgaggtgcatggtatcaa
tgtgaatggagccccacaaacgcaagacaaccttgcagccttccttatgc
caccagattacagtgtaggtcctagtaactcatcctatcaccaaaaggga
aaaggaaagctcccccatgacctctgtctgtctgtctgtctgtctgtctt
tcaagacagagtttctccttgttgccctggctgtcctagaactctttctc
tctgtgtgtaaaccagattgacttaaaactcatagagatttgcctgcttc
tgcttcccgagagctgggattaaaggtgtgcaccaccaccacccagctca
ggacacattttttttttaaaaaagccaagaaactagtcaggcttattaac
agtatgccaagttacagcaaattctgctcaacttagtagctctccacatg
caacaaaagagaagttccaccttgcaatttggcatccattcctcttcctc
ttaaataaaaaaaaaaaatcacaccatcttttgttttaattttgccacct
ggagccttaaattttgccctcaactttataattcacaatgcagctctcag
atgggcgtgattaaccacgctgagccatctggtagcctcccgttttaacc
aatcattcttgctaagtaggtattaagatcagttgttcctggaagcagga
ggagggcatctgctgtaaacagggatatgttgcaatctttttaaaacatt
attttgaatttgagctgcttctaaattcccatactctctacactagttat
cgttctgcccttggaatgtgcttcaccggcatctcatctggagtatccct
gaaaggatagagcaggacatgctattgaagccctgcagaaataaatataa
tcttagtcacacttaagagctattcgttgtatcatcagcatcaccagtca
ctacgtcatttaggttcagctgtcaatagctcttctgggaaccaaccagc
aacttgtggtaaccgtcaagccgactgaacatactgccaaagcttcaact
agctatgagagaggccagagatacataaagccttctgtaaggaattggaa
ccttgacttgaaatccagggcaattctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41720471_41721350
seq2: B6Ng01-122D04.b_48_929

seq1  GAATTCCACTATAGTACTATCCTTGGCCCCAATAGGGCCACAGTATTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTATAGTACTATCCTTGGCCCCAATAGGGCCACAGTATTAGC  50

seq1  AATTACAGATACAATTTCTTTAATGTGTATTTTAAAATTTGACACATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGATACAATTTCTTTAATGTGTATTTTAAAATTTGACACATACT  100

seq1  TGCTGACTTCACACAGCCACAGCCCTCTAGTGACATGAACTTGGCCTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACTTCACACAGCCACAGCCCTCTAGTGACATGAACTTGGCCTGCA  150

seq1  CTTCAGAAGGAAATTTCCAGAGAGGCCAAGCATAAAGTGGTTTGCTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAGGAAATTTCCAGAGAGGCCAAGCATAAAGTGGTTTGCTTAAA  200

seq1  AATGAGCATATAAATTGAACTAGATTTCTCCCATGGTTTAGGTTCATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCATATAAATTGAACTAGATTTCTCCCATGGTTTAGGTTCATCTT  250

seq1  GGTTTTTAAAAACTTTTGGAAAGTGCGTAAAGTTTTTAAGACCACATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAAAAACTTTTGGAAAGTGCGTAAAGTTTTTAAGACCACATATT  300

seq1  CTATAATGTCAAGTGTCGGCAGGGTTTTTGTTCAGGGGAGAATATAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGTCAAGTGTCGGCAGGGTTTTTGTTCAGGGGAGAATATAGGTT  350

seq1  TTAAGAGAATAAGGATAGGCAAATTCTTGCTTGGATTTTAGGCATTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGAATAAGGATAGGCAAATTCTTGCTTGGATTTTAGGCATTCAAT  400

seq1  CTGTTAACAACTGAAGCTGTGATGGTTCCAGTTATGAGGTGTAGCTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACAACTGAAGCTGTGATGGTTCCAGTTATGAGGTGTAGCTTTCC  450

seq1  AACAGAATAAAGGGTAATATTTAACATGAAAGCAATAGTTGGTATTATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATAAAGGGTAATATTTAACATGAAAGCAATAGTTGGTATTATGT  500

seq1  ATCTGGGAGGCAGGGTGGTCAATGGCAGAGCTAGGGTGGCCAGACTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAGGCAGGGTGGTCAATGGCAGAGCTAGGGTGGCCAGACTGCAT  550

seq1  TCTGTCATGCCTGCAAAGTCTCTCCCTTGCTCACACTCCTCTAAGAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCATGCCTGCAAAGTCTCTCCCTTGCTCACACTCCTCTAAGAAGAA  600

seq1  AAGAGCAGTCTAAGGACATGTTAGCCATTCCATTACTTGTCAACAACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGTCTAAGGACATGTTAGCCATTCCATTACTTGTCAACAACTAG  650

seq1  GTAATGCTTTGCTAGGGCTGGGTGTACAGAAGAAATGAAGAAACAATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGCTTTGCTAGGGCTGGGTGTACAGAAGAAATGAAGAAACAATGAT  700

seq1  CACCACCACACAGTTCACAATGTCTGTTTCTGTCAATGCGCCAACAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCACACAGTTCACAATGTCTGTTTCTGTCAATGCGCCAACAATCA  750

seq1  ATACTTAAGAAAAGTGTGTGTGGTGGGGGGCAGGGGGAGGTGGAACTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAGAAAAGTGTGTGTGGTGGGGGGCAGGGGGAGGTGGAACTCAT  800

seq1  GCTAGGTGGAAA-TCAGAAGACCATGTGAGGAAGACAATAGAGAGAGCCA  849
      ||||||| |||| |||||||||||| ||||||||||| |  |||||||||
seq2  GCTAGGTTGAAATTCAGAAGACCATTTGAGGAAGACATTTTAGAGAGCCA  850

seq1  GTTCTCTTTATCATGTAGGCCCAGAG-GTTGA  880
      ||||||||| |||||||||||||||| |||||
seq2  GTTCTCTTTTTCATGTAGGCCCAGAGTGTTGA  882

seq1: chr3_41870645_41871906
seq2: B6Ng01-122D04.g_68_1297 (reverse)

seq1  GAGAGAATTTGCACTGTAGTTTCAAGTGTCAAGGTTCAATTTCCACTTAC  50
      ||||||| |||| ||| | ||||||  |||||||||| | |||  |||||
seq2  GAGAGAA-TTGCCCTGGA-TTTCAA--GTCAAGGTTCCAATTC--CTTAC  44

seq1  AGAGAAAGTTTTCTAATGATTCATCGGGCTCTTCTATAGCTAGTTGTAGC  100
        |||| | |||   |||  ||   || ||||   ||||||||||| |||
seq2  --AGAAGGCTTT---ATGTATCTCTGGCCTCTCTCATAGCTAGTTGAAGC  89

seq1  TTTTGGGCCAGTATGGGTGCAGTTCGAGCTTGACCTGTCTACCACAGATG  150
      |||   | ||||||  || ||| ||| |||||||  |  |||||||  | 
seq2  TTT---GGCAGTAT--GTTCAG-TCG-GCTTGAC--GGTTACCACAAGTT  130

seq1  GCTGTGTGTGTTCACAGAAGAGCTAATGACACAGCTGAAACTAAATGAAC  200
      |||| ||  |||| ||||||||||| ||  ||||||||| ||||||| ||
seq2  GCTG-GTTGGTTCCCAGAAGAGCTATTG--ACAGCTGAACCTAAATG-AC  176

seq1  GTTAGTGGACTGGTGATGGCTGATGATACCACGAATAGCTCTTTAGTGTG  250
      | |||| |||||||||| ||||||||||| ||||||||||||| ||||||
seq2  G-TAGT-GACTGGTGAT-GCTGATGATACAACGAATAGCTCTTAAGTGTG  223

seq1  ACTAAGATTTATTATTTATTTCCTGCAGGGCTTCATTAGCATGTCCCTGC  300
      |||||||||   ||||||||| ||||||||||||| |||||||| |||||
seq2  ACTAAGATT--ATATTTATTT-CTGCAGGGCTTCAATAGCATGT-CCTGC  269

seq1  TCTATCCCTTTCAGGGATACTCCAGATGAGATGCCGGTGAAGCACATTCC  350
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAT-CCTTTCAGGGATACTCCAGATGAGATGCCGGTGAAGCACATTCC  318

seq1  AAGGGCAGAACGATAACTAGTGTAGAGAGTATGGGAATTTAGAAGCAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCAGAACGATAACTAGTGTAGAGAGTATGGGAATTTAGAAGCAGCT  368

seq1  CAAATTCAAAATAATGTTTTAAAAAGATTGCAACATATCCCTGTTTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAAAATAATGTTTTAAAAAGATTGCAACATATCCCTGTTTACAG  418

seq1  CAGATGCCCTCCTCCTGCTTCCAGGAACAACTGATCTTAATACCTACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCCCTCCTCCTGCTTCCAGGAACAACTGATCTTAATACCTACTTA  468

seq1  GCAAGAATGATTGGTTAAAACGGGAGGCTACCAGATGGCTCAGCGTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATGATTGGTTAAAACGGGAGGCTACCAGATGGCTCAGCGTGGTT  518

seq1  AATCACGCCCATCTGAGAGCTGCATTGTGAATTATAAAGTTGAGGGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGCCCATCTGAGAGCTGCATTGTGAATTATAAAGTTGAGGGCAAA  568

seq1  ATTTAAGGCTCCAGGTGGCAAAATTAAAACAAAAGATGGTGTGATTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGCTCCAGGTGGCAAAATTAAAACAAAAGATGGTGTGATTTTTT  618

seq1  TTTTTTATTTAAGAGGAAGAGGAATGGATGCCAAATTGCAAGGTGGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTAAGAGGAAGAGGAATGGATGCCAAATTGCAAGGTGGAACT  668

seq1  TCTCTTTTGTTGCATGTGGAGAGCTACTAAGTTGAGCAGAATTTGCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTGTTGCATGTGGAGAGCTACTAAGTTGAGCAGAATTTGCTGTA  718

seq1  ACTTGGCATACTGTTAATAAGCCTGACTAGTTTCTTGGCTTTTTTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCATACTGTTAATAAGCCTGACTAGTTTCTTGGCTTTTTTAAAAA  768

seq1  AAAAATGTGTCCTGAGCTGGGTGGTGGTGGTGCACACCTTTAATCCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGTCCTGAGCTGGGTGGTGGTGGTGCACACCTTTAATCCCAGC  818

seq1  TCTCGGGAAGCAGAAGCAGGCAAATCTCTATGAGTTTTAAGTCAATCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGGGAAGCAGAAGCAGGCAAATCTCTATGAGTTTTAAGTCAATCTGG  868

seq1  TTTACACACAGAGAGAAAGAGTTCTAGGACAGCCAGGGCAACAAGGAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACACAGAGAGAAAGAGTTCTAGGACAGCCAGGGCAACAAGGAGAA  918

seq1  ACTCTGTCTTGAAAGACAGACAGACAGACAGACAGACAGAGGTCATGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTCTTGAAAGACAGACAGACAGACAGACAGACAGAGGTCATGGGG  968

seq1  GAGCTTTCCTTTTCCCTTTTGGTGATAGGATGAGTTACTAGGACCTACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTTCCTTTTCCCTTTTGGTGATAGGATGAGTTACTAGGACCTACAC  1018

seq1  TGTAATCTGGTGGCATAAGGAAGGCTGCAAGGTTGTCTTGCGTTTGTGGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATCTGGTGGCATAAGGAAGGCTGCAAGGTTGTCTTGCGTTTGTGGG  1068

seq1  GCTCCATTCACATTGATACCATGCACCTCAGAAAAGGGCATGTCCAATTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATTCACATTGATACCATGCACCTCAGAAAAGGGCATGTCCAATTT  1118

seq1  GATGTTAAGGATTTTCTACTTCAGGACTTTTCTAGATTCCAGTCTGAGAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAAGGATTTTCTACTTCAGGACTTTTCTAGATTCCAGTCTGAGAA  1168

seq1  GAGCTCAGAATTTCCCTTTTCCGTAATCCCTGGAACATCTGAGAGCCTGC  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGAATTTCCCTTTTCCGTAATCCCTGGAACATCTGAGAGCCTGC  1218

seq1  ACAAATGAATTC  1262
      ||||||||||||
seq2  ACAAATGAATTC  1230