BAC Information

Click to search

BAC

Clone NameB6Ng01-122F12
Chromosome3 (Build37)12 (Build37)
Map Location 41,059,141 - 41,059,73713,992,047 - 13,993,307
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122F12.bB6Ng01-122F12.g
ACCDH925794DH925795
length9641,231
definitionDH925794|Mus musculus domesticus DNA, BAC clone: B6Ng01-122F12, 5' end.DH925795|Mus musculus domesticus DNA, BAC clone: B6Ng01-122F12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,141 - 41,059,737)(13,992,047 - 13,993,307)
sequence
gaattcttcgtttagctgtaagtaccatttttaaatggggttatttgatt
ttctggagtccactttcttgagttctttatatatattggatattagtccc
ctatctgatttaggattgataaagatcctttcccaatctgttggtggccc
ttttgtcttattgacagtgtgttttgccttacagaagctttgcaatttta
tggggccccatttgtcgattctcgatctttcagcacaagccattgctgtt
ctattcaggaattttccccctgtgcccatattttcgaggcttttctcagc
tttctcctctataagtttcagtgtctctggttttatgtggagttccttga
tccacttagatttgagcttagtacaaggagataggaatggatcaattcgc
attcttgtacatgataaccaccggttgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtgaaagatcaagt
gacaataggtgtgtgggttcatatctgggtcttcaattctatttcattgg
tctacttgtctggttaccagtactgtgcagtttttatcacaattgctctg
tagtacagctttaggtcaggcatggtgattccaccagaggttcatttatc
attgagaagagtttttcctatcctaggttttttgttattccagatgaatt
tgcagattgcgttttcaaattcactgaagaattgagttggaattttgatg
gggattgcattgaatctgtagattgcttttggaatgatagccatttttac
tatattgatcctgccaatccatgagcatgggagatctttccatcttctga
ggtcttctttgatttctttcttcagagacttgaagttcttatcatacaga
tctttcacttccttaattagaatcacgccaaggtattttatatatttgtg
actatggagaaggg
gaattcataatatagactgctctagtgtcaaatttctgctaatcctcctg
tctctgtctcctgagtacaaggactgtggtcatgggccaccaatcccagt
cacaggtcacagtctttaaaatgagggcattaataatacctgacatacag
ttttctctgaaattaacaataacacctacctctaaacatatattagcctg
atctagtcacctcgatcctagggtcctaagcatcttgcccagaccccagc
ctcagtggtttctatacaacaactaatttctgaagggcattaaatgagaa
atcatttttttaaagctaagtgtcttttaatggctcacttgtccataatt
attacacttacagttttgtttagttttttatttattattttttaattagg
tattttcttcatttttaagagacccttataacctctcttctgccgggaac
agatgcaccacatctccactgtggcaatattttgttctgtattttgttgg
ctccattatgtgagccagccaaatgctgccttagaaatcaagatgaagtt
tcttccatgttcaaaagacctagaaatggccattcatgaacctctaaaat
gtatttgagcatccaatgctattggttttcagaatctgcctcagaggcag
atgctgtatatgctggatactcattatcatctcctagatcagtggttctc
aaccttcctaatgatgcaaccttttagtacagttcctcaggttgtggtga
cccccaacaattatttttgttgatgcttaataactgtaattgtgttactc
taattaattgtaatgtcaacatttgatatgcaggatatctgattatgcta
cccctatgacagggtcatttgacactcaaagggatgcactctctggagag
aaaggaaattggtccttacaaatgctgtgttctctttgtgctctctggca
cttgcagtacatgtgggtctctgctttcagtaccagtcctcacaatactc
aggctattatgtgagcttcttgaagtttacagtatctccagaatccatga
ggtccagtataattatccatcatcatcatcatcatccgcatcacatcaca
tctactcattatcagatatcagttcttcctcagtaatacatccaccacag
tttcaacttcccccttcccaatcttcgttccgtccaacctaactctccaa
aacacctttttctgcctccctcggtaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059141_41059737
seq2: B6Ng01-122F12.b_48_641 (reverse)

seq1  CAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGAC  50
      ||||||||||||||||||||  |||||||||      |||||||| ||||
seq2  CAATTGTGATAAAAACTGCACAGTACTGGTA----ACCAGACAAGTAGAC  46

seq1  CAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCA  100
      ||||| ||||||||||||||| |||| | ||| |||||||||||| ||||
seq2  CAATGAAATAGAATTGAAGACCCAGATATGAACCCACACACCTATTGTCA  96

seq1  CTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCA  150
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCTTTCACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCA  146

seq1  TTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATG  200
      |||||||||||||||||||||||||| ||| ||||||||||| |||||||
seq2  TTTTCAACAAATGGTGCTGGCACAACCGGTGGTTATCATGTACAAGAATG  196

seq1  CGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGAT  250
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  CGAATTGATCCATTCCTATCTCCTTGTACTAAGCTCAAATCTAAGTGGAT  246

seq1  CAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAG  296

seq1  TGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGA  350
        | ||||||||| ||| |||||| |||||||| |||||||||| |||||
seq2  CTGAGAAAAGCCTCGAAAATATGGGCACAGGGGGAAAATTCCTGAATAGA  346

seq1  ACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCAT  400
      ||||||||||||||||||| ||||| |||||| |||||||||| || |||
seq2  ACAGCAATGGCTTGTGCTGAAAGATCGAGAATCGACAAATGGGGCCCCAT  396

seq1  GAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAA  450
       ||| ||||||||||||| ||||||||| |||| ||||||||||||||| 
seq2  AAAATTGCAAAGCTTCTGTAAGGCAAAACACACTGTCAATAAGACAAAAG  446

seq1  GG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG  499
      || ||||||||||||||||||||||||||| | |||||||||||||||||
seq2  GGCCACCAACAGATTGGGAAAGGATCTTTATCAATCCTAAATCAGATAGG  496

seq1  GGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAA  549
      ||||||||||||||||||||| ||||||||||||| ||||| ||||||||
seq2  GGACTAATATCCAATATATATAAAGAACTCAAGAAAGTGGACTCCAGAAA  546

seq1  ATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  597
      |||||||||||||||| ||||||||  || | |||||||| |||||||
seq2  ATCAAATAACCCCATTTAAAAATGGTACTTACAGCTAAACGAAGAATT  594

seq1: chr12_13992047_13993307
seq2: B6Ng01-122F12.g_67_1297 (reverse)

seq1  TTGTTTATGAGGGGAGGCAGAAAAGAGCTGGATTTGGGGAAGAGTAGAGT  50
      |||||||    ||||||||||||| || ||  ||| ||  |||||   ||
seq2  TTGTTTACCGAGGGAGGCAGAAAA-AGGTG--TTTTGG--AGAGTTAGGT  45

seq1  TGGGAGGGGAAGGGGAGAGACTGGAGGAAGGGGG-AGTAGAAACTGTGGT  99
      |||    |||| |    ||| ||  ||||||||| ||| |||||||||||
seq2  TGG--ACGGAACG---AAGATTG--GGAAGGGGGAAGTTGAAACTGTGGT  88

seq1  TGGAATGTAATATATGAGAGAAGAATTGAT-GATGATGATGATGATGATG  148
        | ||||| ||  |||| |||||| ||||   |||| |||| |  ||| 
seq2  --GGATGTATTA-CTGAG-GAAGAACTGATATCTGATAATGA-GTAGAT-  132

seq1  GTGATGGTGATGGTGATGATGATGATGATGATGGTGATAGATTATACTGG  198
      ||||| ||||||  |||||||||||||||||||  |||| ||||||||||
seq2  GTGAT-GTGATGCGGATGATGATGATGATGATG--GATA-ATTATACTGG  178

seq1  ACCTCATGGGATTCTGGAGATACTGTTAAAAACTCCAGGAAGCTCACAAT  248
      ||||||| ||||||||||||||||||   ||||| || ||||||||| ||
seq2  ACCTCAT-GGATTCTGGAGATACTGT---AAACTTCAAGAAGCTCAC-AT  223

seq1  AATAAGCCCTGAGTATTGTGAAGGACTGGTACTGAAAGCAGGAGACCCAC  298
      ||||   ||||||||||||| ||||||||||||||||||| |||||||||
seq2  AATA--GCCTGAGTATTGTG-AGGACTGGTACTGAAAGCA-GAGACCCAC  269

seq1  ATGTTACTGCAAGTGCCAGAGAGCACAAAGAGAACACAGCATTTGTAAGG  348
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATG-TACTGCAAGTGCCAGAGAGCACAAAGAGAACACAGCATTTGTAAGG  318

seq1  ACCAATTTCCTTTCTCTTCAGAGAGTGCCATCCCTTTGAGTGTCAAATGA  398
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  ACCAATTTCCTTTCTCTCCAGAGAGTG-CATCCCTTTGAGTGTCAAATGA  367

seq1  CCCTGTCATAGGGGTAGCAT-ATCAGATATCCTGCATATCAAATGTTGAC  447
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCTGTCATAGGGGTAGCATAATCAGATATCCTGCATATCAAATGTTGAC  417

seq1  ATTACAATTAATTAGAGTAACACAATTACAGTTATTAAGCATCAACAAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAATTAATTAGAGTAACACAATTACAGTTATTAAGCATCAACAAAA  467

seq1  ATAATTGTTGGGGGTCACCACAACCTGAGGAACTGTACTAAAAGGTTGCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGTTGGGGGTCACCACAACCTGAGGAACTGTACTAAAAGGTTGCA  517

seq1  TCATTAGGAAGGTTGAGAACCACTGATCTAGGAGATGATAATGAGTATCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAGGAAGGTTGAGAACCACTGATCTAGGAGATGATAATGAGTATCC  567

seq1  AGCATATACAGCATCTGCCTCTGAGGCAGATTCTGAAAACCAATAGCATT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATACAGCATCTGCCTCTGAGGCAGATTCTGAAAACCAATAGCATT  617

seq1  GGATGCTCAAATACATTTTAGAGGTTCATGAATGGCCATTTCTAGGTCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTCAAATACATTTTAGAGGTTCATGAATGGCCATTTCTAGGTCTT  667

seq1  TTGAACATGGAAGAAACTTCATCTTGATTTCTAAGGCAGCATTTGGCTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATGGAAGAAACTTCATCTTGATTTCTAAGGCAGCATTTGGCTGG  717

seq1  CTCACATAATGGAGCCAACAAAATACAGAACAAAATATTGCCACAGTGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATAATGGAGCCAACAAAATACAGAACAAAATATTGCCACAGTGGA  767

seq1  GATGTGGTGCATCTGTTCCCGGCAGAAGAGAGGTTATAAGGGTCTCTTAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTGCATCTGTTCCCGGCAGAAGAGAGGTTATAAGGGTCTCTTAA  817

seq1  AAATGAAGAAAATACCTAATTAAAAAATAATAAATAAAAAACTAAACAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAGAAAATACCTAATTAAAAAATAATAAATAAAAAACTAAACAAA  867

seq1  ACTGTAAGTGTAATAATTATGGACAAGTGAGCCATTAAAAGACACTTAGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTAAGTGTAATAATTATGGACAAGTGAGCCATTAAAAGACACTTAGC  917

seq1  TTTAAAAAAATGATTTCTCATTTAATGCCCTTCAGAAATTAGTTGTTGTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAAATGATTTCTCATTTAATGCCCTTCAGAAATTAGTTGTTGTA  967

seq1  TAGAAACCACTGAGGCTGGGGTCTGGGCAAGATGCTTAGGACCCTAGGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACCACTGAGGCTGGGGTCTGGGCAAGATGCTTAGGACCCTAGGAT  1017

seq1  CGAGGTGACTAGATCAGGCTAATATATGTTTAGAGGTAGGTGTTATTGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTGACTAGATCAGGCTAATATATGTTTAGAGGTAGGTGTTATTGTT  1067

seq1  AATTTCAGAGAAAACTGTATGTCAGGTATTATTAATGCCCTCATTTTAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGAGAAAACTGTATGTCAGGTATTATTAATGCCCTCATTTTAAA  1117

seq1  GACTGTGACCTGTGACTGGGATTGGTGGCCCATGACCACAGTCCTTGTAC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGACCTGTGACTGGGATTGGTGGCCCATGACCACAGTCCTTGTAC  1167

seq1  TCAGGAGACAGAGACAGGAGGATTAGCAGAAATTTGACACTAGAGCAGTC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGACAGAGACAGGAGGATTAGCAGAAATTTGACACTAGAGCAGTC  1217

seq1  TATATTATGAATTC  1261
      ||||||||||||||
seq2  TATATTATGAATTC  1231