BAC Information

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BAC

Clone NameB6Ng01-122H10
Chromosome3 (Build37)
Map Location 93,566,862 - 93,752,778
singlet/doubletdoublet
Overlap geneEG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346
Upstream geneLce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550
Downstream geneTdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122H10.bB6Ng01-122H10.g
ACCDH925879DH925880
length965317
definitionDH925879|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H10, 5' end.DH925880|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,752,236 - 93,752,778)(93,566,862 - 93,567,178)
sequence
gaattcttcttgagcatgaatttattttattgtattatattgtatggaat
ttccttttagatattacatcccaacaccagttttcccttactcctttcct
ccaagtaacttccccccccccccagacttcttctatgtctactcctttgc
ttcttttcagaagatagtagacctgccaaagatgtcaaccaaatgaaaca
ggtcacaataatactgacacatgccctcatactaaggcaggacaaagcaa
cgcagtaggaggaaagggatcccaaaagtaggcaaaagattcaaagaatt
gtagcgtgtaattataaaaaataatccacaatatgtctggctacttgctt
tcaaccgagatctcacctgcccccatggtttctgctgcaaactggctgcc
aagctgcccagatcttcccagtccaattgcttcctttgggtagccagcag
aaagccagctgctgcttgcacaagtccctgtaacccagtaaaataaaact
ccagaggcttgtaatttatcagtcagatttataatactaaatcatcaacc
cctaaaatgattacacaaagaattcaaaagtcaattgataataggacaag
ctgcatacctagacagggcaaatgtatgccaaattactcaattgaccttc
aacgatatccatagctacctgtggctctttcagaccacgaggttatggtt
catcttcttccttcatcttctctccatcccctgtcttgtttctctctttc
cctgtctctgtttctaccctttctaaaattttcactctactccctcctcc
cattgcccaatcacagcctctagacttatatgactaagaattcacctgag
tgcacctgactatgggcactcttgagggagcaaaacatactaacagcact
ctacagagacaggccctcctcccactgttaggaatccccccagaacacca
agctgctcaactata
tctcttctgaaaggaagcaaaggagtggaggtggaagaggactgttagag
ggccagggatttcagggaaggagggagggaaaactgggctgtaatgtata
agagaaaaaaattttttttccagacagggtttctctgtgtagccctggct
gtcctggaactcactttgtagaccaggctggcctcgaactcagaaatctg
cctgcctctgccttccgagtgctgggattaaaggcatgcaccaccatgtc
cggcttaagagaaaatttactgtaaaggaaaaataccataaaaaataaat
tcatgtttaataaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93752236_93752778
seq2: B6Ng01-122H10.b_50_592 (reverse)

seq1  GATTTAGTATTATAAATCTGACTGATAAATTACAAGCCTCTGGAGTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGTATTATAAATCTGACTGATAAATTACAAGCCTCTGGAGTTTTA  50

seq1  TTTTACTGGGTTACAGGGACTTGTGCAAGCAGCAGCTGGCTTTCTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGGGTTACAGGGACTTGTGCAAGCAGCAGCTGGCTTTCTGCTGG  100

seq1  CTACCCAAAGGAAGCAATTGGACTGGGAAGATCTGGGCAGCTTGGCAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAAAGGAAGCAATTGGACTGGGAAGATCTGGGCAGCTTGGCAGCC  150

seq1  AGTTTGCAGCAGAAACCATGGGGGCAGGTGAGATCTCGGTTGAAAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCAGCAGAAACCATGGGGGCAGGTGAGATCTCGGTTGAAAGCAAG  200

seq1  TAGCCAGACATATTGTGGATTATTTTTTATAATTACACGCTACAATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGACATATTGTGGATTATTTTTTATAATTACACGCTACAATTCTT  250

seq1  TGAATCTTTTGCCTACTTTTGGGATCCCTTTCCTCCTACTGCGTTGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTTTGCCTACTTTTGGGATCCCTTTCCTCCTACTGCGTTGCTTT  300

seq1  GTCCTGCCTTAGTATGAGGGCATGTGTCAGTATTATTGTGACCTGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCCTTAGTATGAGGGCATGTGTCAGTATTATTGTGACCTGTTTCA  350

seq1  TTTGGTTGACATCTTTGGCAGGTCTACTATCTTCTGAAAAGAAGCAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTGACATCTTTGGCAGGTCTACTATCTTCTGAAAAGAAGCAAAGG  400

seq1  AGTAGACATAGAAGAAGTCTGGGGGGGGGGGGAAGTTACTTGGAGGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACATAGAAGAAGTCTGGGGGGGGGGGGAAGTTACTTGGAGGAAAG  450

seq1  GAGTAAGGGAAAACTGGTGTTGGGATGTAATATCTAAAAGGAAATTCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGGGAAAACTGGTGTTGGGATGTAATATCTAAAAGGAAATTCCAT  500

seq1  ACAATATAATACAATAAAATAAATTCATGCTCAAGAAGAATTC  543
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAATACAATAAAATAAATTCATGCTCAAGAAGAATTC  543

seq1: chr3_93566862_93567178
seq2: B6Ng01-122H10.g_73_389

seq1  TCTCTTCTGAAAGGAAGCAAAGGAGTGGAGGTGGAAGAGGACTGTTAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGAAAGGAAGCAAAGGAGTGGAGGTGGAAGAGGACTGTTAGAG  50

seq1  GGCCAGGGATTTCAGGGAAGGAGGGAGGGAAAACTGGGCTGTAATGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGGATTTCAGGGAAGGAGGGAGGGAAAACTGGGCTGTAATGTATA  100

seq1  AGAGAAAAAAATTTTTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAAAATTTTTTTTCCAGACAGGGTTTCTCTGTGTAGCCCTGGCT  150

seq1  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTG  200

seq1  CCTGCCTCTGCCTTCCGAGTGCTGGGATTAAAGGCATGCACCACCATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTGCCTTCCGAGTGCTGGGATTAAAGGCATGCACCACCATGTC  250

seq1  CGGCTTAAGAGAAAATTTACTGGAAAGGAAAAATACCATAAAAAATAAAT  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGGCTTAAGAGAAAATTTACTGTAAAGGAAAAATACCATAAAAAATAAAT  300

seq1  TCATGTTTAAGAAAACT  317
      |||||||||| ||||||
seq2  TCATGTTTAATAAAACT  317