BAC Information

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BAC

Clone NameB6Ng01-122H16
Chromosome3 (Build37)
Map Location 50,649,795 - 50,795,861
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
Downstream geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122H16.bB6Ng01-122H16.g
ACCDH925891DH925892
length1,089807
definitionDH925891|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H16, 5' end.DH925892|Mus musculus domesticus DNA, BAC clone: B6Ng01-122H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,649,795 - 50,650,888)(50,795,055 - 50,795,861)
sequence
gaattccatgcaaaggattacaagcattttagatggactttctaatggag
cagaagtggccataaaaatctgctggagggtatctgccattggtcggtgc
cgatggactctcgctttttattttgctgtctaagatttctctaacttatc
ttctggttgcactctaatgaaatacgccctctcacagaactcagaaactt
gtatgcaagtctatggcaactaaggagaatatttttcaaacataataatg
tgtatgggggcagaggggcacgacaatgcagtgttctctcaattgtgggg
tataataagttcatggtaaccttctgtcttagttaaggtcactattgcta
tgatgaaaaattatgacaaaggtatcttgggaggaaaggatttgtttggc
ttatgcatttatatcagtttctcatcaaagaaggtcaggacaggcactca
aagagggcaggaacctggaggcaggatctgatgcagaggccacaaagaag
tgctgtttactgagttcctcctcggggcttgctcagcctgacttattaca
gaatccaggaccaccagcccaggaatgaccccacctacaatggtctgggc
cctcccctgtaaaccactaatttaaaaaaaaaaaatcctataggtttgcc
tacaggtggatcttatgaaggtattttctcaactgacactgcctcctctc
tgataaccctagcttatgtcatattgatataatgctagccagagtacctc
tcctggggaaagagttggtattgagtttgaagtgaatgcaagataggaac
tcaacacaatgactcactgcatgctaaagatgttcttttcataggaccaa
aggagcggaaagggtttgcaacctcataggaggaacaacatatgaactaa
ccagtacccccagagctcccaggaactaaaccaccaaccaaagagtacac
atggagagacccatgactcagccacagaggatggtcttgtggtcatcaat
gggaggagaggccatgtctgtgaaggctctatgctccagtgtagggaatg
ccaggtcaggagagggagttgggttgggttgggtgatca
gaattcagagcccattttggtggtaaggagacaactggatcccttagatg
atgcaaagaatattgaattatgacctaagaggcctgcatttaaaaacaaa
aaccaaaaagaaccccagggaaacattgaaaggaatggaaggagagacag
aggaactagagagcctgcaagggttgaggttggtgcgtaaatgtgatgca
ggagacagacattctagctgatgggcagaaggaggaatacaaactggtgc
agtccctatggaaatcagtggaagtttctcaaaacacaaaagccagggag
accatatgacccagctatatcactcccgggcatgtgccggaaggactcca
ccccacccctgagatacttacacatccctagctattactgctcttttata
taaagaagaaggaaatccaatcatcctaaatgtccataaacagataatta
gatgataaaaaagtggtacatggacacggtgagactttattcaaccataa
agaaaaatgatatgaaaatctcaggaaagtgtatggaacggaaaaacaaa
attgtaagtggggtgacaaacccaggctcagaaggacaaatgcggagtgc
ttctcctcatatgaggatctcagcttctgacttttatacacggatatctg
tgtttccggagcgagcgtgtgcaaagttcatgataatagaaaggagatgg
ggagacttgaaaatgtggtcttgaagaagagcgtgggagggtaagagaac
attacccttacgtgttacgatagggaaaagggaacaccggggtgggggta
ggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50649795_50650888
seq2: B6Ng01-122H16.b_47_1135

seq1  GAATTCCATGCAAAGGATTACAAGCATTTTAGATGGACTTTCTAATGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCAAAGGATTACAAGCATTTTAGATGGACTTTCTAATGGAG  50

seq1  CAGAAGTGGCCATAAAAATCTGCTGGAGGGTATCTGCCATTGGTCGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGGCCATAAAAATCTGCTGGAGGGTATCTGCCATTGGTCGGTGC  100

seq1  CGATGGACTCTCGCTTTTTATTTTGCTGTCTAAGATTTCTCTAACTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGACTCTCGCTTTTTATTTTGCTGTCTAAGATTTCTCTAACTTATC  150

seq1  TTCTGGTTGCACTCTAATGAAATACGCCCTCTCACAGAACTCAGAAACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTGCACTCTAATGAAATACGCCCTCTCACAGAACTCAGAAACTT  200

seq1  GTATGCAAGTCTATGGCAACTAAGGAGAATATTTTTCAAACATAATAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAAGTCTATGGCAACTAAGGAGAATATTTTTCAAACATAATAATG  250

seq1  TGTATGGGGGCAGAGGGGCACGACAATGCAGTGTTCTCTCAATTGTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGGGGGCAGAGGGGCACGACAATGCAGTGTTCTCTCAATTGTGGGG  300

seq1  TATAATAAGTTCATGGTAACCTTCTGTCTTAGTTAAGGTCACTATTGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAAGTTCATGGTAACCTTCTGTCTTAGTTAAGGTCACTATTGCTA  350

seq1  TGATGAAAAATTATGACAAAGGTATCTTGGGAGGAAAGGATTTGTTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAAAATTATGACAAAGGTATCTTGGGAGGAAAGGATTTGTTTGGC  400

seq1  TTATGCATTTATATCAGTTTCTCATCAAAGAAGGTCAGGACAGGCACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCATTTATATCAGTTTCTCATCAAAGAAGGTCAGGACAGGCACTCA  450

seq1  AAGAGGGCAGGAACCTGGAGGCAGGATCTGATGCAGAGGCCACAAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCAGGAACCTGGAGGCAGGATCTGATGCAGAGGCCACAAAGAAG  500

seq1  TGCTGTTTACTGAGTTCCTCCTCGGGGCTTGCTCAGCCTGACTTATTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTACTGAGTTCCTCCTCGGGGCTTGCTCAGCCTGACTTATTACA  550

seq1  GAATCCAGGACCACCAGCCCAGGAATGACCCCACCTACAATGGTCTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCCAGGACCACCAGCCCAGGAATGACCCCACCTACAATGGTCTGGGC  600

seq1  CCTCCCCTGTAAACCACTAATTTAAAAAAAAAAAATCCTATAGGTTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTGTAAACCACTAATTTAAAAAAAAAAAATCCTATAGGTTTGCC  650

seq1  TACAGGTGGATCTTATGAAGGTATTTTCTCAACTGACACTGCCTCCTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTGGATCTTATGAAGGTATTTTCTCAACTGACACTGCCTCCTCTC  700

seq1  TGATAACCCTAGCTTATGTCATATTGATATAATGCTAGCCAGAGTACCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACCCTAGCTTATGTCATATTGATATAATGCTAGCCAGAGTACCTC  750

seq1  CCCTGGGGAAAGAGTTGGTATTGAGTTTGAAGTGAATGCAAGATAGGAAC  800
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGAAAGAGTTGGTATTGAGTTTGAAGTGAATGCAAGATAGGAAC  800

seq1  TCAACACAATGACTCACTGCATGCTAAAGATGTTC-TTTCATAGGACCAA  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAACACAATGACTCACTGCATGCTAAAGATGTTCTTTTCATAGGACCAA  850

seq1  AGGAGCGGAAAGGGTTTGCAACCTCATAGGAGGAACAACAATATGAACTA  899
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGAGCGGAAAGGGTTTGCAACCTCATAGGAGGAACAAC-ATATGAACTA  899

seq1  ACCAGTACCCCCAGAGCTCCCAGGAACTAAACCACCAACCAAAGAGTACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCCCCAGAGCTCCCAGGAACTAAACCACCAACCAAAGAGTACA  949

seq1  CATGGAGAGACCCATGACTCCAGCCACAGAGGATGGCCTTGTTGGTCATC  999
      ||||||||||||||||||| |||||||||||||||| |||| ||||||||
seq2  CATGGAGAGACCCATGACT-CAGCCACAGAGGATGGTCTTG-TGGTCATC  997

seq1  AATGGGAGGAGAGGCCCATGGTCCTGTGAAGGCTCTATGCTCCAGTGTAG  1049
      |||||||||||||| |||||   |||||||||||||||||||||||||| 
seq2  AATGGGAGGAGAGG-CCATG--TCTGTGAAGGCTCTATGCTCCAGTGTA-  1043

seq1  GGGAATGCCAGGGCCAGGAAGAGGGAGT--GGGTGGGTT-GGTGATCA  1094
      |||||||||| || |||| |||||||||  || |||||| ||||||||
seq2  GGGAATGCCA-GGTCAGG-AGAGGGAGTTGGGTTGGGTTGGGTGATCA  1089

seq1: chr3_50795055_50795861
seq2: B6Ng01-122H16.g_69_875 (reverse)

seq1  CCACCCCTACCCCCACCCCGGTGTTCCCTTTTCCCTATCGTAACACGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCTACCCCCACCCCGGTGTTCCCTTTTCCCTATCGTAACACGTAA  50

seq1  GGGTAATGTTCTCTTACCCTCCCACGCTCTTCTTCAAGACCACATTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATGTTCTCTTACCCTCCCACGCTCTTCTTCAAGACCACATTTTCA  100

seq1  AGTCTCCCCATCTCCTTTCTATTATCATGAACTTTGCACACGCTCGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCCCATCTCCTTTCTATTATCATGAACTTTGCACACGCTCGCTCC  150

seq1  GGAAACACAGATATCCGTGTATAAAAGTCAGAAGCTGAGATCCTCATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAGATATCCGTGTATAAAAGTCAGAAGCTGAGATCCTCATATG  200

seq1  AGGAGAAGCACTCCGCATTTGTCCTTCTGAGCCTGGGTTTGTCACCCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAGCACTCCGCATTTGTCCTTCTGAGCCTGGGTTTGTCACCCCAC  250

seq1  TTACAATTTTGTTTTTCCGTTCCATACACTTTCCTGAGATTTTCATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTTTGTTTTTCCGTTCCATACACTTTCCTGAGATTTTCATATCA  300

seq1  TTTTTCTTTATGGTTGAATAAAGTCTCACCGTGTCCATGTACCACTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTATGGTTGAATAAAGTCTCACCGTGTCCATGTACCACTTTTT  350

seq1  TATCATCTAATTATCTGTTTATGGACATTTAGGATGATTGGATTTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTAATTATCTGTTTATGGACATTTAGGATGATTGGATTTCCTTC  400

seq1  TTCTTTATATAAAAGAGCAGTAATAGCTAGGGATGTGTAAGTATCTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATATAAAAGAGCAGTAATAGCTAGGGATGTGTAAGTATCTCAGG  450

seq1  GGTGGGGTGGAGTCCTTCCGGCACATGCCCGGGAGTGATATAGCTGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGTGGAGTCCTTCCGGCACATGCCCGGGAGTGATATAGCTGGGTC  500

seq1  ATATGGTCTCCCTGGCTTTTGTGTTTTGAGAAACTTCCACTGATTTCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTCTCCCTGGCTTTTGTGTTTTGAGAAACTTCCACTGATTTCCAT  550

seq1  AGGGACTGCACCAGTTTGTATTCCTCCTTCTGCCCATCAGCTAGAATGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGCACCAGTTTGTATTCCTCCTTCTGCCCATCAGCTAGAATGTC  600

seq1  TGTCTCCTGCATCACATTTACGCACCAACCTCAACCCTTGCAGGCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTGCATCACATTTACGCACCAACCTCAACCCTTGCAGGCTCTCT  650

seq1  AGTTCCTCTGTCTCTCCTTCCATTCCTTTCAATGTTTCCCTGGGGTTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCTGTCTCTCCTTCCATTCCTTTCAATGTTTCCCTGGGGTTCTT  700

seq1  TTTGGTTTTTGTTTTTAAATGCAGGCCTCTTAGGTCATAATTCAATATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTTGTTTTTAAATGCAGGCCTCTTAGGTCATAATTCAATATTC  750

seq1  TTTGCATCATCTAAGGGATCCAGTTGTCTCCTTACCACCAAAATGGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATCATCTAAGGGATCCAGTTGTCTCCTTACCACCAAAATGGGCTC  800

seq1  TGAATTC  807
      |||||||
seq2  TGAATTC  807