BAC Information

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BAC

Clone NameB6Ng01-122J21
Chromosome3 (Build37)
Map Location 23,719,453 - 23,888,906
singlet/doubletdoublet
Overlap geneEG635702
Upstream geneLOC623751, LOC100039548
Downstream geneEG665189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122J21.bB6Ng01-122J21.g
ACCDH925996DH925997
length1,0181,027
definitionDH925996|Mus musculus domesticus DNA, BAC clone: B6Ng01-122J21, 5' end.DH925997|Mus musculus domesticus DNA, BAC clone: B6Ng01-122J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,887,867 - 23,888,906)(23,719,453 - 23,720,497)
sequence
gaattcccctataaggaaaggtgttgtgaaattcattgacttttctgtaa
tgctatgttgtactatattatatcagtgatagcacactattaaaccaaga
catggactccattcaggtatgttttcactaaaaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaaaaaaaaaaaaggatgctaatttcttgggctgaaaaaat
ggtttaatagttaaatacatctactgtaaatatgaggatccactaaatgt
tccatgaaagtggaacccaaccttactttctgccaaaggatgtggagaga
aaaaacaaaaagagtggcaaattataccagctgtttaggtgagctctggt
tttggttgaaaggttctgcctcaaaaaaaaagcaaaggtggaaataaatg
aaaaagctgggtttacacaggcacaggcatccacatatatccaacaaggg
atcccactcatatgtcaacacatatttataaacatctccactattacaca
tatgaaaagacaatgctggtttctaggaaggcatagataaactgacatca
ataggagtcatttaaattgacttcatgctctattttgtgatagacaaaga
aattaactatgctgattggtttaaggttgtagatagataatcatcataga
aagagatataagtcaccttatgttattttgattagaaattgaagagtttg
tgtcttcttattccaaatatgttgctttttttcctttttccaatatttta
ttaggtatttttttcatttacatttcaaatgctatcccaaaagtacccta
tacacccctgctccctaccaacacacttccacttcttggccctggtgttc
ccctatactggacatataaagttttcaagaacaaaggggactctcttctc
aatgatgcctactagcatctctgctacatatgcagctagagaccgctagc
tctaggtactgatagtcatattgttgtccactatagtgcagcctcagctc
ctgatactctcagctcct
gaattcattgaatcactactacatttttacatttatatctattcttaaat
aacttaaactacaaaataactaaatacatgtttcttttacttaatatcca
tattttagagatacttgagaatctatttcataagatctaagtgttacgaa
ttaaaaatcaaatacctgtattgtcattgacttcttcaattaatgaaaat
ttccttacctgaaaccttatttcttaaattctaatacttaatgcatgaaa
aaaaagtgcatgtgcctctgggttggaccctttggaattgtagatgaaag
ctgagaggaaagatgttaatggatttttgaaacaggcacgttggtacatg
tcacttgacatttattcctcactcagtgaatattctggcagacacattag
tccagtatccccaaaccaataccattcagtgaactgactggtatgcaaag
atcaagacctcttggagaagaatatgtcctcagcctaaattatacaagtg
tcagggagtctgggagataatcttacaatatcactaaatatttcacaatt
gtaaagttataaaggaaatatttaagatacaggactttgttacttttagc
acagaatatggaagaacatttacattttgatagcaaaagaagaaataaca
tatttgcatccttcactcaatcagaaggaaaattgggggagggagtggga
ttaaaaatgtgggtttttagtgaatctctttactaacctcaaaagacagg
aaatgttgggtaatttttttcgtagaatttgaaatcgtttttcaattccc
aaatgcagatgaggtacatttaaaacaagctatgctactgttcaacagct
gtgataaattacgtcttttgaagctagctacacatgcttctgccctctgt
ggctttgtgagcacataaagcatcagttcagagaagccttatgcctgcac
atgtgggaattcgtctggtcatcctgctatttcattttatactgataact
ttaagataatacatgtatgtattattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_23887867_23888906
seq2: B6Ng01-122J21.b_49_1066 (reverse)

seq1  AGGAGCTTGAGAAAGTATCCAAGGAGCTGAAGGGGCCTGCAACCCTATAG  50
      |||||||   || ||||||  |||||||||    | |||||   ||||| 
seq2  AGGAGCT---GAGAGTATC--AGGAGCTGA----GGCTGCA---CTATA-  37

seq1  GTGGAACAACAATATGAACTAATCAGTAACCCTAGAGCTAGC-GTCTCTA  99
      |||| ||||||||||| ||| |||||||  |||||||||||| |||||||
seq2  GTGG-ACAACAATATG-ACT-ATCAGTA--CCTAGAGCTAGCGGTCTCTA  82

seq1  GCTGCATATGTAGCAGAAGATGGCCTAGTAGGCCATCATTGAGAAGAGAG  149
      |||||||||||||||| |||||  |||||||| |||||||||||||||||
seq2  GCTGCATATGTAGCAG-AGATG--CTAGTAGG-CATCATTGAGAAGAGAG  128

seq1  TCCCCTTTG-TCTTGAAAACTTTATATGTCCCAGTATAGGGGAACACCAG  198
      ||||||||| ||||||||||||||||||| ||||||||||||||||||||
seq2  TCCCCTTTGTTCTTGAAAACTTTATATGT-CCAGTATAGGGGAACACCAG  177

seq1  GGCCAAGAAGTGGAAGTGTGTTGGTAGGGGAGCAGGGGTGTATAGGGTAC  248
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCCAAGAAGTGGAAGTGTGTTGGTA-GGGAGCAGGGGTGTATAGGGTAC  226

seq1  TTTTGGGATAGCATTTGAAATGTAAATGAAAAAAATACCTAATAAAATAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGATAGCATTTGAAATGTAAATGAAAAAAATACCTAATAAAATAT  276

seq1  TGGAAAAAGGAAAAAAAGCAACATATTTGGAATAAGAAGACACAAACTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAGGAAAAAAAGCAACATATTTGGAATAAGAAGACACAAACTCT  326

seq1  TCAATTTCTAATCAAAATAACATAAGGTGACTTATATCTCTTTCTATGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTCTAATCAAAATAACATAAGGTGACTTATATCTCTTTCTATGAT  376

seq1  GATTATCTATCTACAACCTTAAACCAATCAGCATAGTTAATTCCTTTGTC  448
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GATTATCTATCTACAACCTTAAACCAATCAGCATAGTTAATTTCTTTGTC  426

seq1  TATCACAAAATAGAGCATGAAGTCAATTTAAATGACTCCTATTGATGTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAAAATAGAGCATGAAGTCAATTTAAATGACTCCTATTGATGTCA  476

seq1  GTTTATCTATGCCTTCCTAGAAACCAGCATTGTCTTTTCATATGTGTAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTATGCCTTCCTAGAAACCAGCATTGTCTTTTCATATGTGTAAT  526

seq1  AGTGGAGATGTTTATAAATATGTGTTGACATATGAGTGGGATCCCTTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGATGTTTATAAATATGTGTTGACATATGAGTGGGATCCCTTGTT  576

seq1  GGATATATGTGGATGCCTGTGCCTGTGTAAACCCAGCTTTCTCATTTATT  648
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGATATATGTGGATGCCTGTGCCTGTGTAAACCCAGCTTTTTCATTTATT  626

seq1  TCCACCTTTGCTTTTTTTTTGAGGCAGAACCTTTCAACCAAAACCAGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTTTGCTTTTTTTTTGAGGCAGAACCTTTCAACCAAAACCAGAGC  676

seq1  TCACCTAAACAGCTGGTATAATTTGCCACTCTCTCTGTTTCTTCTCTCCA  748
      |||||||||||||||||||||||||||||||| | ||||| |||||||||
seq2  TCACCTAAACAGCTGGTATAATTTGCCACTCTTTTTGTTTTTTCTCTCCA  726

seq1  CATCCTTTGGCAGAAAGTAAGGTTGGGTTCCACTCTCATGGAACATTTAG  798
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CATCCTTTGGCAGAAAGTAAGGTTGGGTTCCACTTTCATGGAACATTTAG  776

seq1  TGGATCCTCATATCTACAGTAGATGTATTTAACTATTAAACCATTTCTTC  848
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TGGATCCTCATATTTACAGTAGATGTATTTAACTATTAAACCATTTTTTC  826

seq1  AGCCCAAGAAATTAGCATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGAAATTAGCATCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  876

seq1  TTTTTTTTTTTTTAGTGAAAACATACCTGAATGGAGTCCATGTCTTGGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTAGTGAAAACATACCTGAATGGAGTCCATGTCTTGGTT  926

seq1  TAATAGTGTGCTATCACTGATATAATATAGTACAACATAGCATTACAGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTGTGCTATCACTGATATAATATAGTACAACATAGCATTACAGAA  976

seq1  AAGTCAATGAATTTCACAACACCTTTCCTTATAGGGGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAATGAATTTCACAACACCTTTCCTTATAGGGGAATTC  1018

seq1: chr3_23719453_23720497
seq2: B6Ng01-122J21.g_66_1092

seq1  GAATTCATTGAATCACTACTACATTTTTACATTTATATCTATTCTTAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAATCACTACTACATTTTTACATTTATATCTATTCTTAAAT  50

seq1  AACTTAAACTACAAAATAACTAAATACATGTTTCTTTTACTTAATATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAACTACAAAATAACTAAATACATGTTTCTTTTACTTAATATCCA  100

seq1  TATTTTAGAGATACTTGAGAATCTATTTCATAAGATCTAAGTGTTACGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAGAGATACTTGAGAATCTATTTCATAAGATCTAAGTGTTACGAA  150

seq1  TTAAAAATCAAATACCTGTATTGTCATTGACTTCTTCAATTAATGAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCAAATACCTGTATTGTCATTGACTTCTTCAATTAATGAAAAT  200

seq1  TTCCTTACCTGAAACCTTATTTCTTAAATTCTAATACTTAATGCATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTACCTGAAACCTTATTTCTTAAATTCTAATACTTAATGCATGAAA  250

seq1  AAAAAGTGCATGTGCCTCTGGGTTGGACCCTTTGGAATTGTAGATGAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGCATGTGCCTCTGGGTTGGACCCTTTGGAATTGTAGATGAAAG  300

seq1  CTGAGAGGAAAGATGTTAATGGATTTTTGAAACAGGCACGTTGGTACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGAAAGATGTTAATGGATTTTTGAAACAGGCACGTTGGTACATG  350

seq1  TCACTTGACATTTATTCCTCACTCAGTGAATATTCTGGCAGACACATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGACATTTATTCCTCACTCAGTGAATATTCTGGCAGACACATTAG  400

seq1  TCCAGTATCCCCAAACCAATACCATTCAGTGAACTGACTGGTATGCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTATCCCCAAACCAATACCATTCAGTGAACTGACTGGTATGCAAAG  450

seq1  ATCAAGACCTCTTGGAGAAGAATATGTCCTCAGCCTAAATTATACAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGACCTCTTGGAGAAGAATATGTCCTCAGCCTAAATTATACAAGTG  500

seq1  TCAGGGAGTCTGGGAGATAATCTTACAATATCACTAAATATTTCACAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGTCTGGGAGATAATCTTACAATATCACTAAATATTTCACAATT  550

seq1  GTAAAGTTATAAAGGAAATATTTAAGATACAGGACTTTGTTACTTTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTTATAAAGGAAATATTTAAGATACAGGACTTTGTTACTTTTAGC  600

seq1  ACAGAATATGGAAGAACATTTACATTTTGATAGCAAAAGAAGAAATAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATATGGAAGAACATTTACATTTTGATAGCAAAAGAAGAAATAACA  650

seq1  TATTTGCATCCTTCACTCAATCAGAAGGAAAATT-GGGGAGGGAGTGGGA  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATTTGCATCCTTCACTCAATCAGAAGGAAAATTGGGGGAGGGAGTGGGA  700

seq1  TTAAAAATGT-GGTTTTTAGTGAATCTCTTTACTAACCTCAAAAGACAGG  748
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGTGGGTTTTTAGTGAATCTCTTTACTAACCTCAAAAGACAGG  750

seq1  AAATGTTGGGTAATTTTTTTCGTAGAATTTGAAAATCGTTTTTCAATTCC  798
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAATGTTGGGTAATTTTTTTCGTAGAATTTG-AAATCGTTTTTCAATTCC  799

seq1  CAAATGCAGATGAGGTACATTTAAAACAAAGCTATTGCTACTGTTCAACA  848
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  CAAATGCAGATGAGGTACATTTAAAAC-AAGCTA-TGCTACTGTTCAACA  847

seq1  GCTGTGAATAAATAACGTC-TTTGAAGCTAAGCTACACATGC-TCTGCCC  896
      |||||| |||||| ||||| ||||||||| |||||||||||| |||||||
seq2  GCTGTG-ATAAATTACGTCTTTTGAAGCT-AGCTACACATGCTTCTGCCC  895

seq1  TCCTGTGGCTTTGTGAGCACATAAAGCATCAGGTTCAGAGAAGCCTTATG  946
      | ||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  T-CTGTGGCTTTGTGAGCACATAAAGCATCA-GTTCAGAGAAGCCTTATG  943

seq1  CCTGTCAGCATGTGGGAATTCGTTCTTGTTCATTCCTGCTATTTTCATTT  996
      |||| || |||||||||||||||   || ||| |||||||| ||||||||
seq2  CCTG-CA-CATGTGGGAATTCGT--CTGGTCA-TCCTGCTA-TTTCATTT  987

seq1  TTATTACTTGTATATACATTTTAAGATACATACATGTATGTATATATTT  1045
      |   ||||  ||     | ||||||||| |||||||||||||| |||||
seq2  T--ATACTGATA-----ACTTTAAGATA-ATACATGTATGTAT-TATTT  1027