BAC Information

Click to search

BAC

Clone NameB6Ng01-122M01
Chromosome3 (Build37)
Map Location 97,177,387 - 97,178,111
singlet/doubletsinglet
Overlap genenone
Upstream genePafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
Downstream geneOlfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2, Phgdh
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122M01.bB6Ng01-122M01.g
ACCDH926096DH926097
length7251,184
definitionDH926096|Mus musculus domesticus DNA, BAC clone: B6Ng01-122M01, 5' end.DH926097|Mus musculus domesticus DNA, BAC clone: B6Ng01-122M01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttatttaaatgtagggtgtgggagaacttattactgtaatgga
caggaatgacccactgtgtggagataagagacttgggaccttagagtctg
tgcagaaacttttctcagtatgggattcatttttagagtaacctggggtc
catgtgtgagttgagacaatttggatagtcagttaataaggagatgtcat
tatgtgatgcacgaagtcactgagaaggaacaggcattagaaaaaagata
atgaattactttgggaacttgcaggtgctgtgagaagtccgtacgcaagt
gttcatttagtactaaaattatagtgctttgtcatggatggcagtgaagt
gtttcccacaggcacgttcctgtgttgcagcttggtccttactggggtct
ggttttctcaggagctggaaactttagaaggtgatgtacctggggggaag
taggtctttgacaggcatttcctgtccctgtccacatcctttggctcctt
gcttcctgaccagcgtcgtgaaatgaacaactttattccgtcacaccttc
ctgctctgacgctctgctttactgtgaccccgaaacagagtccagataac
cacatgctggaaaccctaagactgtgtgccaaaataaatctcctcatttt
aaattacttttcttttcttttctttttttttttttttttaacctgagaca
gggtttctctgtatagccctggctg
gaattctcacccgagaaatatcgaatggcagagaagcacctgaaaaaatg
ttcaatatctttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcagttcctca
gaaaattggacatagtactaccggaggatcctgcaatatctcttctggac
atatatccagaagatgttccaaccagtaagaaggacacatgctctactat
gttcatagcagccttatttataacagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaagatataagatacaatttgctaaacgcatgaaactcaa
gaataacgaagaccaaagtgtgggacactttgccccttcttagaattgga
aggagttacagagacaaagttttggaactgagacgaaaggatggaccatc
tagagactgccatatccagggatccatcccataatcagcttccaaacgct
gacaccattgcatacactagcaagatttttgctgaaaggacccagatata
gctgtcttcttgtgagactatgccggggccttagcaaacacagaagtgga
tgctcacagtcagctattggggtggaatcacagggcccccaaatgaagga
actagaagaagtacccaaaggagcttaaagggtatctgcatctctatagg
tggaacaacattatgaacctaccagtattcccagagctcttgtactctta
gctgcatatgttcaaagaagcttagtccggcatcactggaaaggaagggc
caatgacttgcaaacctatatatggccagttacaatggaaatgccccatg
cccataaatggggaacttggaaggcctaggcgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_97177387_97178111
seq2: B6Ng01-122M01.b_48_772

seq1  GAATTCCTTATTTAAATGTAGGGTGTGGGAGAACTTATTACTGTAATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTTAAATGTAGGGTGTGGGAGAACTTATTACTGTAATGGA  50

seq1  CAGGAATGACCCACTGTGTGGAGATAAGAGACTTGGGACCTTAGAGTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATGACCCACTGTGTGGAGATAAGAGACTTGGGACCTTAGAGTCTG  100

seq1  TGCAGAAACTTTTCTCAGTATGGGATTCATTTTTAGAGTAACCTGGGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAACTTTTCTCAGTATGGGATTCATTTTTAGAGTAACCTGGGGTC  150

seq1  CATGTGTGAGTTGAGACAATTTGGATAGTCAGTTAATAAGGAGATGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGAGTTGAGACAATTTGGATAGTCAGTTAATAAGGAGATGTCAT  200

seq1  TATGTGATGCACGAAGTCACTGAGAAGGAACAGGCATTAGAAAAAAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATGCACGAAGTCACTGAGAAGGAACAGGCATTAGAAAAAAGATA  250

seq1  ATGAATTACTTTGGGAACTTGCAGGTGCTGTGAGAAGTCCGTACGCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTACTTTGGGAACTTGCAGGTGCTGTGAGAAGTCCGTACGCAAGT  300

seq1  GTTCATTTAGTACTAAAATTATAGTGCTTTGTCATGGATGGCAGTGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTAGTACTAAAATTATAGTGCTTTGTCATGGATGGCAGTGAAGT  350

seq1  GTTTCCCACAGGCACGTTCCTGTGTTGCAGCTTGGTCCTTACTGGGGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCACAGGCACGTTCCTGTGTTGCAGCTTGGTCCTTACTGGGGTCT  400

seq1  GGTTTTCTCAGGAGCTGGAAACTTTAGAAGGTGATGTACCTGGGGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCAGGAGCTGGAAACTTTAGAAGGTGATGTACCTGGGGGGAAG  450

seq1  TAGGTCTTTGACAGGCATTTCCTGTCCCTGTCCACATCCTTTGGCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTTTGACAGGCATTTCCTGTCCCTGTCCACATCCTTTGGCTCCTT  500

seq1  GCTTCCTGACCAGCGTCGTGAAATGAACAACTTTATTCCGTCACACCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGACCAGCGTCGTGAAATGAACAACTTTATTCCGTCACACCTTC  550

seq1  CTGCTCTGACGCTCTGCTTTACTGTGACCCCGAAACAGAGTCCAGATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGACGCTCTGCTTTACTGTGACCCCGAAACAGAGTCCAGATAAC  600

seq1  CACATGCTGGAAACCCTAAGACTGTGTGCCAAAATAAATCTCCTCATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTGGAAACCCTAAGACTGTGTGCCAAAATAAATCTCCTCATTTT  650

seq1  AAATTACTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTAACCTGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTTAACCTGAGACA  700

seq1  GGGTTTCTCTGTATAGCCCTGGCTG  725
      |||||||||||||||||||||||||
seq2  GGGTTTCTCTGTATAGCCCTGGCTG  725