BAC Information

Click to search

BAC

Clone NameB6Ng01-122N21
Chromosome3 (Build37)
Map Location 6,723,189 - 6,724,289
singlet/doubletsinglet
Overlap genenone
Upstream geneEG667759, LOC100041165, LOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349
Downstream geneOlfr289-ps1, EG667801, Pkia, LOC667807, 3110050N22Rik, Il7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122N21.bB6Ng01-122N21.g
ACCDH926184DH926185
length1,0911,194
definitionDH926184|Mus musculus domesticus DNA, BAC clone: B6Ng01-122N21, 5' end.DH926185|Mus musculus domesticus DNA, BAC clone: B6Ng01-122N21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtggttgtttgcatctgcgcctttcaccactgctggctcatgg
actgcttgaattaagatgaaccagagtgcagccatttcgtttattttaag
atgtcagattttggatatcaactgatatttacttagctgcttccttagat
caagggctttctctcttcttattcatgtaacaagatgcttatacatgctg
aattgtaatctgtgaggaaaaacaaaagcattgttggttgttcaaaaaat
aaaaaataagaactccaatttagaatgcagggaatgaatagaaatgtcag
gatgcatgtatttctcactgtagaattgtgctgtgcagaaacagaagccc
tggtttgaaacatattgcagaattattagctagaaatacaataagagact
tagtaaagctagagaggttgttccactatactttctgtgccaataatctg
gttttttaaaatgtgttatcattgaaatacaaattttagttctcaaactt
tactctgtaaaacggttgtagaattaaaaatgtgatcttcacaatatatg
agtttacacagttttgcaactatgtagtagattttagaaaatatttgaca
tttataccccatactttcaaacattgaaaaaaattgtcaccactagtgtt
tgaacaatcaaactggtctgtctggccagtgaagaaatgatgcctgtcgt
tagtgcagcaaatgtctggtgaattctctgacacagcagcctttccatac
cacattctcagccagaggaagtaagagaaatgcacatactgctagattgt
attttaatttgttggtgataaaaccaaatccatagattcaaacatagatg
tgatactgtcttaggtcagatgggcataaagaacatcaagtacctgagaa
aatatcttctgggtcatttaggtcttaactaatttagcagtatagaatgt
gtaaatgtgtctaatgcatagacttactcttaaatttgtacatcatggtt
tattctacataatactgtttaaaaggtaaagagtcccacactttatttga
tatgggattatttgataaactgcaacatatttgtacacttt
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaagaaccaactcctcgtttggttaattctttgaa
tagttcttcttgtttccacttggttgatttcacccctgagtttgattatt
tcctgccgtctactcctcttggtgatttgcttccttttttctagggcttt
agatgtgtgtcagctgctagtatgtgctgtctcccggtttcttcttggag
gcactcagagctatgagtttccctctagaatgcttccatatgtccatagg
tttggggtacgtgtggctcattttcataacttctaagagttttaatcctt
ctatatccttctttgacacaaggattcttgaagaaggggtatccagttca
aggaatgtgcttccattatatgtgtatgaaaacgtcctagccatggtgcc
tcgcatagatatcgtggactattctcaacttgtgtgtgtaacgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6723189_6724289
seq2: B6Ng01-122N21.b_49_1139 (reverse)

seq1  AAAGTGTACAAATATGTTTGCAGTGTATCAAATAATCCCATTATCAAATA  50
      |||||||||||||||| ||||||| ||||||||||||||| |||||||||
seq2  AAAGTGTACAAATATG-TTGCAGTTTATCAAATAATCCCA-TATCAAATA  48

seq1  AAGTGTGGGAACTCTTTTACTTTTAAAACAGTATTATGTAGAATAAACCA  100
      ||||||||| |||| ||||| ||| |||||||||||||||||||||||| 
seq2  AAGTGTGGG-ACTC-TTTACCTTTTAAACAGTATTATGTAGAATAAACC-  95

seq1  ATGATTGTACCAAATTTAAGAGTAAGTCTATGCATTAGGACACATTTACA  150
      |||| |||| ||||||||||||||||||||||||||| ||||||||||||
seq2  ATGA-TGTA-CAAATTTAAGAGTAAGTCTATGCATTA-GACACATTTACA  142

seq1  CAATTCTATAACTGCTAAATTAGTTAAGACCTAAATGACCCAGAAGATAT  200
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  C-ATTCTAT-ACTGCTAAATTAGTTAAGACCTAAATGACCCAGAAGATAT  190

seq1  TTTCTCAGGTACTTGATGTTCTTTATGCCCATCTGACCTAAGACAGTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGTACTTGATGTTCTTTATGCCCATCTGACCTAAGACAGTATC  240

seq1  ACATCTATGTTTGAATCTATGGATTTGGTTTTATCACCAACAAATTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTATGTTTGAATCTATGGATTTGGTTTTATCACCAACAAATTAAAA  290

seq1  TACAATCTAGCAGTATGTGCATTTCTCTTACTTCCTCTGGCTGAGAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATCTAGCAGTATGTGCATTTCTCTTACTTCCTCTGGCTGAGAATGT  340

seq1  GGTATGGAAAGGCTGCTGTGTCAGAGAATTCACCAGACATTTGCTGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGGAAAGGCTGCTGTGTCAGAGAATTCACCAGACATTTGCTGCACT  390

seq1  AACGACAGGCATCATTTCTTCACTGGCCAGACAGACCAGTTTGATTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGACAGGCATCATTTCTTCACTGGCCAGACAGACCAGTTTGATTGTTC  440

seq1  AAACACTAGTGGTGACAATTTTTTTCAATGTTTGAAAGTATGGGGTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACTAGTGGTGACAATTTTTTTCAATGTTTGAAAGTATGGGGTATAA  490

seq1  ATGTCAAATATTTTCTAAAATCTACTACATAGTTGCAAAACTGTGTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAATATTTTCTAAAATCTACTACATAGTTGCAAAACTGTGTAAAC  540

seq1  TCATATATTGTGAAGATCACATTTTTAATTCTACAACCGTTTTACAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATTGTGAAGATCACATTTTTAATTCTACAACCGTTTTACAGAGT  590

seq1  AAAGTTTGAGAACTAAAATTTGTATTTCAATGATAACACATTTTAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGAGAACTAAAATTTGTATTTCAATGATAACACATTTTAAAAAA  640

seq1  CCAGATTATTGGCACAGAAAGTATAGTGGAACAACCTCTCTAGCTTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTATTGGCACAGAAAGTATAGTGGAACAACCTCTCTAGCTTTACT  690

seq1  AAGTCTCTTATTGTATTTCTAGCTAATAATTCTGCAATATGTTTCAAACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTTATTGTATTTCTAGCTAATAATTCTGCAATATGTTTCAAACC  740

seq1  AGGGCTTCTGTTTCTGCACAGCACAATTCTACAGTGAGAAATACATGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCTGTTTCTGCACAGCACAATTCTACAGTGAGAAATACATGCAT  790

seq1  CCTGACATTTCTATTCATTCCCTGCATTCTAAATTGGAGTTCTTATTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATTTCTATTCATTCCCTGCATTCTAAATTGGAGTTCTTATTTTT  840

seq1  TATTTTTTGAACAACCAACAATGCTTTTGTTTTTCCTCACAGATTACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGAACAACCAACAATGCTTTTGTTTTTCCTCACAGATTACAAT  890

seq1  TCAGCATGTATAAGCATCTTGTTACATGAATAAGAAGAGAGAAAGCCCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGTATAAGCATCTTGTTACATGAATAAGAAGAGAGAAAGCCCTT  940

seq1  GATCTAAGGAAGCAGCTAAGTAAATATCAGTTGATATCCAAAATCTGACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAGGAAGCAGCTAAGTAAATATCAGTTGATATCCAAAATCTGACA  990

seq1  TCTTAAAATAAACGAAATGGCTGCACTCTGGTTCATCTTAATTCAAGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATAAACGAAATGGCTGCACTCTGGTTCATCTTAATTCAAGCAG  1040

seq1  TCCATGAGCCAGCAGTGGTGAAAGGCGCAGATGCAAACAACCACAGAATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAGCCAGCAGTGGTGAAAGGCGCAGATGCAAACAACCACAGAATT  1090

seq1  C  1101
      |
seq2  C  1091