BAC Information

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BAC

Clone NameB6Ng01-123A04
Chromosome8 (Build37)3 (Build37)
Map Location 19,976,178 - 19,977,36141,057,636 - 41,058,157
singlet/doubletsingletsinglet
Overlap geneEG665822
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
Downstream gene6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123A04.bB6Ng01-123A04.g
ACCDH926292DH926293
length1,166906
definitionDH926292|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A04, 5' end.DH926293|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,976,178 - 19,977,361)(41,057,636 - 41,058,157)
sequence
gaattctcagctgtaaaagaatccagatgttctaagatgatttggggggg
atgccaaaaggatgccagatttttacaaagacctgccaagtcttgatgtg
tgctccttaggaaccattctggaagagatgctgggaagtgcacccccccg
ccactccccctccaccccccaagcaagatattcgtgagaaagggaggaag
acagagttgggtggacagaggagctgagcctcaatgttgtagccactgag
gtctaagccagttctacaggagctggggaggctccaaactgtgaggaggg
ggtccttagtaccacctgtgtcagctttactcactacaggctctcatcta
agacagtggttggagttttaacacagctcctcctgttgtgaggactctca
accataaaattatcttgttgcggttctctcgacagctgtccctctttata
agttggcactccgtaaggatgaagccatgttcagctccagtgccaagact
gtgaagccaaatggggagaagccggatgagttccaagtctggcatctctc
aggtgctgctcgagctggagatgaacgcagatgtcaaggctctgctgcag
gaagtcaacatcaccacaaccaaggaaattgaagttggtggtggtcggaa
agctaccataatttttgtaccagttcctcagctttaagtctttccagaaa
attcatgtcaggctagttcgtgaattggagaaaaaattcagtgggaagca
agtagtgttcattgctcagaggaggattctgcccaagccaacctggaaaa
tccgtatgaaaaataagcagaagcgccccagaaaccacaccctgacagta
gtgcatgacagcagacttggtcttccaagtgaaattgtgggtagaggatc
tgtgtgaaactggatggcagccggctcataaagttcatttagacaaagca
cagcagacactaggagcacagttggaactttttctggtgtgtacaagagg
cccacaggcaaggatgttaattcggaattccagagtttcagttgtaaaga
aaatgacttgataagtgtcattcatagtattagaaggaactttcttggtg
ctgctctactgtaatctgctactgcttaaatcataattaatatctggaat
gccggatagcgacccc
gaattctctggtggaatttttagggatatatatatatatatatatatata
tatatatatatatataatcatgtcatctgcaaatagtgatattttgactt
cttcctttccaatttgtatccctttgatcttcttttgttgtctaattgct
ctgggtaggagttcgagtactatattgaataggtagggagaaagtgagca
gccttgtctagtccctgattttagtgggattgcttcaactttctctccat
ttagtttgatgttagatactggtttgctttatattgtttttattatgttt
agttatgggccttgaatttctgatatttcatgaatgggtgttggattttg
tcaaatgctttctcagcatctaaggagatgatcatgtggcttttgtcttt
gagtttgtttatatagtctattatgttgatggatttccatatattaaacc
atccctgcatccctgggatgaaggccacttgatcatgatcgatgattgtt
ttgatgtgttcttggattccgttagtgagagttttattgagtatttttgc
atcaatattcataagggaaactaaaaagctattaaaaacaataaatttat
gaaattcttaggcaaatggattgatctagaggctattcatctggtcctgg
ctttttttggttgggagacgattaatgacagattctatttctgtagggga
aatgggagtgtttagatcgttaatctgatcctgatttaactttgatatgg
tatctgtctaggaaattgtccatttcatccaggttttccagttgttgagt
atagccttttgtagaagatctgatgatgttttggatttcctcaggtctgt
tgttatgtctcttattcattctgatttgtcattaggatactgccctgggc
cctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_19976178_19977361
seq2: B6Ng01-123A04.b_47_1212

seq1  GAATTCTCAGCTGTAAAAGAATCCAGATGTTCTAAGATGATTTGGGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTGTAAAAGAATCCAGATGTTCTAAGATGATTTGGGGGGG  50

seq1  ATGCCAAAAGGATGCCAGATTTTTACAAAGACCTGCCAAGTCTTGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAAAGGATGCCAGATTTTTACAAAGACCTGCCAAGTCTTGATGTG  100

seq1  TGCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAGTGCACCCCCCCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTAGGAACCATTCTGGAAGAGATGCTGGGAAGTGCACCCCCCCG  150

seq1  CCACTCCCCCTCCACCCCCTCCCCCAAGCAAGATATTCGTGAGAAAGGGA  200
      |||||||||||||||     ||||||||||||||||||||||||||||||
seq2  CCACTCCCCCTCCAC-----CCCCCAAGCAAGATATTCGTGAGAAAGGGA  195

seq1  GGAAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACAGAGTTGGGTGGACAGAGGAGCTGAGCCTCAATGTTGTAGCCA  245

seq1  CTGAGGTCTAAGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCTAAGCCAGTTCTACAGGAGCTGGGGAGGCTCCAAACTGTGAG  295

seq1  GAGGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGGTCCTTAGTACCACCTGTGTCAGCTTTACTCACTACAGGCTCTC  345

seq1  ATCTAAGACAGTGGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGACAGTGGTTGGAGTTTTAACACAGCTCCTCCTGTTGTGAGGAC  395

seq1  TCTCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCATAAAATTATCTTGTTGCGGTTCTCTCGACAGCTGTCCCTCT  445

seq1  TTATAAGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTATAAGTTGGCACTCCGTAAGGATGAAGCCATGTTCAGCTCCAGTGCCA  495

seq1  AGACTGTGAAGCCAAATGGGGAGAAGCCGGATGAGTTCCAAGTCTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTGAAGCCAAATGGGGAGAAGCCGGATGAGTTCCAAGTCTGGCAT  545

seq1  CTCTCAGGTGCTGCTTGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGC  600
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTCAGGTGCTGCTCGAGCTGGAGATGAACGCAGATGTCAAGGCTCTGC  595

seq1  TGCAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAGTCAACATCACCACAACCAAGGAAATTGAAGTTGGTGGTGGT  645

seq1  CGGAAAGCTACCATAATTTTTGTACCAGTTCCTCAGCTTTAAGTCTTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAGCTACCATAATTTTTGTACCAGTTCCTCAGCTTTAAGTCTTTCC  695

seq1  AGAAAATTCATGTCAGGCTAGTTCGTGAATTGGAGAAAAAATTCAGTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCATGTCAGGCTAGTTCGTGAATTGGAGAAAAAATTCAGTGGG  745

seq1  AAGCAAGTAGTGTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCAACCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTAGTGTTCATTGCTCAGAGGAGGATTCTGCCCAAGCCAACCTG  795

seq1  GAAAATCCGTATGAAAAATAAGCAGAAGCGCCCCAGAAACCACACCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCGTATGAAAAATAAGCAGAAGCGCCCCAGAAACCACACCCTGA  845

seq1  CAGTAGTGCATGACAGCAGACTTGGTCTTCCCAAGTGAAATTGTGGGTAG  900
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAGTAGTGCATGACAGCAGACTTGGTCTT-CCAAGTGAAATTGTGGGTAG  894

seq1  AGGATCTGTGTGAAACTGGATGGCAGCCGGCTCATAAAAGTTCATTTAGA  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGATCTGTGTGAAACTGGATGGCAGCCGGCTCAT-AAAGTTCATTTAGA  943

seq1  CAAAGCACAGCAGAACAACTAGGAGCACAAGGTTGGAACTTTTTCTGGTG  1000
      ||||||||||||||   ||||||||||||  |||||||||||||||||||
seq2  CAAAGCACAGCAGA--CACTAGGAGCACA--GTTGGAACTTTTTCTGGTG  989

seq1  TGTACAAGAAGCCCACAGGCAAGGATGTTAATTCGGAATTCCCAGAGTTT  1050
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TGTACAAGAGGCCCACAGGCAAGGATGTTAATTCGGAATT-CCAGAGTTT  1038

seq1  CAGTTGTAAAGAAAATGAC-TGATAAAGTGTCATTCATAGTATTAGAA-G  1098
      ||||||||||||||||||| |||| ||||||||||||||||||||||| |
seq2  CAGTTGTAAAGAAAATGACTTGAT-AAGTGTCATTCATAGTATTAGAAGG  1087

seq1  TACTATCTTGTTGCTGCTTCATAACTGTAAATCTGCTACTGCTATAAATC  1148
       ||| ||||| |||||||     ||||| |||||||||||||| ||||||
seq2  AACTTTCTTGGTGCTGCT---CTACTGT-AATCTGCTACTGCT-TAAATC  1132

seq1  ATAATGTAATATCTGATATGCAGGATAGCAGACCCC  1184
      ||||| |||||||||  |||| ||||||| ||||||
seq2  ATAAT-TAATATCTGGAATGCCGGATAGC-GACCCC  1166

seq1: chr3_41057636_41058157
seq2: B6Ng01-123A04.g_567_969 (reverse)

seq1  TAGAGGGCACAGGGACAGCATCCTAACTAACAAAATCAGAAATGAAAAGG  50
      |||||||| ||||| ||| ||||||| | || ||||||| |||||| |  
seq2  TAGAGGGCCCAGGG-CAGTATCCTAA-TGAC-AAATCAG-AATGAATA-A  45

seq1  GAGACATAACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTAC  100
      |||||||||||||||| ||||| ||||||||||||| |||||||| || |
seq2  GAGACATAACAACAGA-CCTGAGGAAATCCAAAACATCATCAGAT-CTTC  93

seq1  TACAAAAGGCTATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAA  150
      ||||||||||||||||||||  |||||||||||||||| |||||||||||
seq2  TACAAAAGGCTATACTCAAC--AACTGGAAAACCTGGATGAAATGGACAA  141

seq1  ATTTCTAGACAGATACCAGGTACCAAAGTTAAATCAGGATCAAGTTAACG  200
       || ||||||||||||||  || |||||||||||||||||||  ||||||
seq2  TTTCCTAGACAGATACCA--TATCAAAGTTAAATCAGGATCAGATTAACG  189

seq1  ATTTAAACAGTCGCATATCCCCTAAAGAAACAGAAGAAGTCATTAATAGT  250
      || |||||| || ||| ||||||| ||||| ||||   ||||||||| ||
seq2  ATCTAAACACTCCCATTTCCCCTACAGAAATAGAATCTGTCATTAATCGT  239

seq1  CTCCCAGCCAAAACAAACCCAGGACCAGATGGTTTTAGTGCAGAGTTCTA  300
      |||||| |||||| ||| |||||||||||||                   
seq2  CTCCCAACCAAAA-AAAGCCAGGACCAGATG-------------------  269

seq1  TCAGACCTTCAAAGAAGATCTAATTCCAGTTCTGCACAAATTATTCCACA  350
        | | | ||     |||||  | ||||  | ||| | ||  ||| || |
seq2  -AATAGCCTC----TAGATC--AATCCA--TTTGC-CTAAGAATTTCATA  309

seq1  AAATAGAAGTAGAAGGTACTCTACCTAACTCATTCTATGAAGCCACAATT  400
                                || | ||| | |          ||
seq2  --------------------------AATTTATTGTTT----------TT  323

seq1  ACTCTGATACCTAAACCACAGAAAGATGCAACAAAGATAGAGAACTTCAG  450
      |     ||| ||                                 || ||
seq2  A-----ATAGCT--------------------------------TTTTAG  336

seq1  ACCAATTTCCCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTCG  500
           |||||||||||||||| |||||||||||||||||||||| |||| 
seq2  -----TTTCCCTTATGAATATTGATGCAAAAATACTCAATAAAACTCTCA  381

seq1  CTAACCGAATCCAAGAACACAT  522
      ||||| ||||||||||||||||
seq2  CTAACGGAATCCAAGAACACAT  403