BAC Information

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BAC

Clone NameB6Ng01-123A19
Chromosome3 (Build37)Y (Build37)
Map Location 18,696,074 - 18,697,1441,870,346 - 1,870,483
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123A19.bB6Ng01-123A19.g
ACCDH926321DH926322
length1,065500
definitionDH926321|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A19, 5' end.DH926322|Mus musculus domesticus DNA, BAC clone: B6Ng01-123A19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,696,074 - 18,697,144)(1,870,346 - 1,870,483)
sequence
gaattccatgagcctactggtaaggggttttgtttgcataccctacctgt
gaactgcattttaaaatgcattttgagctttgagctaataatgtgaatga
cattcagcgagattgccaaatgctggtaatttagtctcattttcacatta
atgtgggcccacctgtgatgaattggaagctaaataagcacatcagtttt
aattagatatttcagagactggatctcgccaaacagcagcattcattctt
atctatttaatagtggaagaatttagcacattcttcagagaagttcacac
accccgtttgtccttcccatttgattttcagatactcctttcaggctctg
ggttaccagatgcctgtgtttgtgtgaatagagaaggagaggatcacatt
aagtcttcaaggagaaccagtcagtcaattagtagtgtgttttaaatcaa
gaagcatggattttggagcctttgaaagataaattccatcactggttgtg
tggaaaatgaataggggtttaacacccatgtttctcaaacattgatctga
tttacatagaccaccaagatatagaatagatcttggatggccttctggca
gaggaggctggtttcaaaattgatatggcttctattcttcacgaaggcag
aatgttttctgatgcactagggtctgggtagaactaatctaatgaaagaa
actgtaaatgtagggatatatttgaattaagataaggaatgaatagacaa
ccaggcttaaaaatcacttatgttttcaaagttgtgtatagttgtgttct
ttccattagcccaaaaccaactcctctctgcctttcctgtaagtacttct
acctggttggactgtgaattctggagggagacagtgggtgtccgttgata
caactctgttctaagtctcagcctaggggctgttccatgaaaggaagtaa
tgtaagactacagggagccttagcttactggggactcctgagtgaactac
atggagctgggatcgatgcaaaagcagaggatttattgttccgtgcactg
gggtggtcccagacc
gaattcaggtcatattatgaagtctcagtctttttttttttttttccatt
ttttattaggtatttagctcatttacatttccaatgctataccaaagtgg
gaacaaaacaccctgggaaggagttacagagacaaagtttggagctgaga
tgaaaggatggtccatgtagagactgccatattcagggatcaaccccata
atcagcatccaaacgctgacaccattgcatacactagcaagattttattg
aaaggacccagatgtagctgtctcttgtgagaatatgccggggcctagca
aacacagaagtggatgctcacagtcacctaatggatggatcacagggctc
ccaatggaggagctagagaaagtacccaaggagctaaagggatctgcaac
cctataggcggaacaacataatgaactaaccagtatcccggagctcttga
ctctagctgcatatgtatcaaaagatggcctagtcggccatcactggaaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18696074_18697144
seq2: B6Ng01-123A19.b_41_1105 (reverse)

seq1  GGTCTGGGACCACCCCAGTGCACTGGAACAATAAATTCCTCTTGCTTTTT  50
      ||||||||||||||||||||||| ||||||||||| ||||| ||| ||||
seq2  GGTCTGGGACCACCCCAGTGCAC-GGAACAATAAA-TCCTC-TGC-TTTT  46

seq1  GCATCGATCCCAGCTCCATGTAGTTCACTCAGGGAGTCCCCAGTAAGCTA  100
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCATCGATCCCAGCTCCATGTAGTTCACTCA-GGAGTCCCCAGTAAGCTA  95

seq1  AGGCTCCCTGTAGTCTTACATTACCTTCCTTTCATGGAACAGCCCCTAGG  150
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGGCTCCCTGTAGTCTTACATTA-CTTCCTTTCATGGAACAGCCCCTAGG  144

seq1  CTGAGACTTAGAACAGAGTTGTATCAACGGACACCCACTGTCTCCCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACTTAGAACAGAGTTGTATCAACGGACACCCACTGTCTCCCTCCA  194

seq1  GAATTCACAGTCCAACCAGGTAGAAGTACTTACAGGAAAGGCAGAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCCAACCAGGTAGAAGTACTTACAGGAAAGGCAGAGAGGA  244

seq1  GTTGGTTTTGGGCTAATGGAAAGAACACAACTATACACAACTTTGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTTTTGGGCTAATGGAAAGAACACAACTATACACAACTTTGAAAAC  294

seq1  ATAAGTGATTTTTAAGCCTGGTTGTCTATTCATTCCTTATCTTAATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTGATTTTTAAGCCTGGTTGTCTATTCATTCCTTATCTTAATTCAA  344

seq1  ATATATCCCTACATTTACAGTTTCTTTCATTAGATTAGTTCTACCCAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCCCTACATTTACAGTTTCTTTCATTAGATTAGTTCTACCCAGAC  394

seq1  CCTAGTGCATCAGAAAACATTCTGCCTTCGTGAAGAATAGAAGCCATATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCATCAGAAAACATTCTGCCTTCGTGAAGAATAGAAGCCATATC  444

seq1  AATTTTGAAACCAGCCTCCTCTGCCAGAAGGCCATCCAAGATCTATTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAAACCAGCCTCCTCTGCCAGAAGGCCATCCAAGATCTATTCTA  494

seq1  TATCTTGGTGGTCTATGTAAATCAGATCAATGTTTGAGAAACATGGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGGTGGTCTATGTAAATCAGATCAATGTTTGAGAAACATGGGTGT  544

seq1  TAAACCCCTATTCATTTTCCACACAACCAGTGATGGAATTTATCTTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCCTATTCATTTTCCACACAACCAGTGATGGAATTTATCTTTCAA  594

seq1  AGGCTCCAAAATCCATGCTTCTTGATTTAAAACACACTACTAATTGACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCCAAAATCCATGCTTCTTGATTTAAAACACACTACTAATTGACTG  644

seq1  ACTGGTTCTCCTTGAAGACTTAATGTGATCCTCTCCTTCTCTATTCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTCTCCTTGAAGACTTAATGTGATCCTCTCCTTCTCTATTCACAC  694

seq1  AAACACAGGCATCTGGTAACCCAGAGCCTGAAAGGAGTATCTGAAAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGCATCTGGTAACCCAGAGCCTGAAAGGAGTATCTGAAAATCA  744

seq1  AATGGGAAGGACAAACGGGGTGTGTGAACTTCTCTGAAGAATGTGCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAGGACAAACGGGGTGTGTGAACTTCTCTGAAGAATGTGCTAAA  794

seq1  TTCTTCCACTATTAAATAGATAAGAATGAATGCTGCTGTTTGGCGAGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCACTATTAAATAGATAAGAATGAATGCTGCTGTTTGGCGAGATC  844

seq1  CAGTCTCTGAAATATCTAATTAAAACTGATGTGCTTATTTAGCTTCCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGAAATATCTAATTAAAACTGATGTGCTTATTTAGCTTCCAAT  894

seq1  TCATCACAGGTGGGCCCACATTAATGTGAAAATGAGACTAAATTACCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACAGGTGGGCCCACATTAATGTGAAAATGAGACTAAATTACCAGC  944

seq1  ATTTGGCAATCTCGCTGAATGTCATTCACATTATTAGCTCAAAGCTCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCAATCTCGCTGAATGTCATTCACATTATTAGCTCAAAGCTCAAA  994

seq1  ATGCATTTTAAAATGCAGTTCACAGGTAGGGTATGCAAACAAAACCCCTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTAAAATGCAGTTCACAGGTAGGGTATGCAAACAAAACCCCTT  1044

seq1  ACCAGTAGGCTCATGGAATTC  1071
      |||||||||||||||||||||
seq2  ACCAGTAGGCTCATGGAATTC  1065

seq1: chrY_1870346_1870483
seq2: B6Ng01-123A19.g_427_564

seq1  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGA  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGCGGA  50

seq1  ACAACATTATGAACTAACCATTACCCCTGAGCTCTTGACTCTTGCTGCAT  100
      ||||||| |||||||||||| || ||| |||||||||||||| |||||||
seq2  ACAACATAATGAACTAACCAGTATCCCGGAGCTCTTGACTCTAGCTGCAT  100

seq1  AGGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA  138
      | ||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAA  138