BAC Information

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BAC

Clone NameB6Ng01-123C07
Chromosome3 (Build37)
Map Location 119,725,382 - 119,914,638
singlet/doubletdoublet
Overlap genenone
Upstream geneDpyd, LOC100043275, LOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123C07.bB6Ng01-123C07.g
ACCDH926393DH926394
length1,175600
definitionDH926393|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C07, 5' end.DH926394|Mus musculus domesticus DNA, BAC clone: B6Ng01-123C07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,913,444 - 119,914,638)(119,725,382 - 119,725,981)
sequence
gaattctggatagccatgctctttctagtaagtttatactggttgtcagt
tattgtgactgtggaagttgtggaagtattactacagtatatttggtaat
agtttccaaactctactgacacaaatgttgctgcctgtgcccttgagggc
tggagatgaggttgcacagaatcaatgacccagactccaggagcaggtga
ggaaagccacgggaactgagcactgctgcaagctcctttactaccctcca
cccacgtcccattggtcccaagaaagcatcttttcaaaacagcagctccc
tattggtggacattgtctgtgtcagcagtccctcaggcagtcttctgtta
ggtcctcctataggagatgcctttgtggctgcaccccaccaccaccattt
aggtagaggttcttttgaaaaagaacaacaacaacaaaaagctctttatc
atctctcttttttgccattgacatgaatacaaatagtgagcatagtgagt
atctggtatagctatgcatggtgtgtatacgtgtgcatattgtcatataa
acagcaaggcaggaggttgatatgggaatgaccctcattccctcttctac
ctcattctctgaggcagtctctcagagctccagcttgcccctaggatcca
ctgattctgtatttcaaagcttgaatactaagcggcatggctactctctc
ctggtatcttccacatgggctttggggcttcccaactcagaatacaacct
ggagtccagtgttttaaccacagtgttgctgatttctttatccctttttg
tctcttagtgagcactgtacctttaaataacattgttctttctgcaatga
aaatcatttaatttccctatgtctcacttttgttagtcaagcatcctgtg
tgtataagctctgtgtgtataaaatgcacattgtataatattgggaaaat
aatatctaggaacatctatgaaagaaagtccggaaagtggacatcatatt
agatgatgcagtccatgtgatgactttgaaaatggctgggagaggttttc
gggggtattaattaattagtgagtccagaacagacatatcaggaagttag
cattacttttaattcaagtgttgtggatagatgggaacctctggccaagg
aaacctttaaagtccgaaaatcttg
gaattcaatgcctccaggcataaacctgtagatcccgtgctctctggaca
cagggaagctgtcggtaagcatggatatgtgcaaaatgccaacactggtg
agtacaagtagactgatcttgaattttaggtcaacctttgtaagactgcg
ttaatcagattcccttcttcatgacacagtactcaaggaagatcattttg
aaggataaaagtttgttttgacccacagcttcagcagtttcactgttttt
ggctaatgatgtgacagaaaaatgtgtcagtggaagacagagattgtgtt
caaaggcagaaaacaatgattcacttcttctaaatatctatccgtgctgt
actagttaccttttagtgctcggataaaacatcaaaaccaatacagttca
tggaagaaatttatcttgtgctcatagttgtagatggctacagtccataa
tgttaggcatcatagacataacatgcataaagacatgccatcaaagatag
gcatggtggataaagcagggagctgagagatcacatcttaaccatagaca
agaggcagaggaagagaaggagggagggaaggaggaaaggggagaaaaag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119913444_119914638
seq2: B6Ng01-123C07.b_44_1218 (reverse)

seq1  CAAGATTTTTCTGGCCTTTAAAAATGTTCTTCCTCTGGCCTGAGGTCTCC  50
      |||||||||   || |||||||  |    ||||| ||||| ||||| |||
seq2  CAAGATTTT--CGGACTTTAAAGGT----TTCCT-TGGCCAGAGGT-TCC  42

seq1  CATCTATTTCACAAACACTTTGATATAAAAGTAATTGCTAACTTTCCTGA  100
      |||||| | ||| ||||| ||||  ||||||||| ||||||| |||||||
seq2  CATCTA-TCCAC-AACAC-TTGAATTAAAAGTAA-TGCTAAC-TTCCTGA  87

seq1  TTATTGTCTGTTCTGGGACTCACTATTTATTTAATACTCACGAAAACCTC  150
      |   |||||||||| |||||||||| ||| ||||||| | ||||||||||
seq2  T--ATGTCTGTTCT-GGACTCACTAATTAATTAATACCCCCGAAAACCTC  134

seq1  TCCCAGCCATTTTCAAGGTCATCACAATGGAACTGCATCATCTAATATGA  200
      |||||||||||||||| |||||||| |||| |||||||||||||||||||
seq2  TCCCAGCCATTTTCAAAGTCATCAC-ATGG-ACTGCATCATCTAATATGA  182

seq1  TGTCCACTTTCCCGGACTTTTCTTTTCATAGATGTTTCTAGATATTATTT  250
      |||||||||| |||||||||   ||||||||||||| |||||||||||||
seq2  TGTCCACTTT-CCGGACTTT--CTTTCATAGATGTTCCTAGATATTATTT  229

seq1  T-CCAATATTATTACAATGTGCATTTTATACACACAGAGCTTATACACAC  299
      | ||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATATTA-TACAATGTGCATTTTATACACACAGAGCTTATACACAC  278

seq1  AGGATGCTTGACTAAC-AAAGTGAGACAATAGGG-AATTAAATGATTTTC  347
      |||||||||||||||| |||||||||| |||||| |||||||||||||||
seq2  AGGATGCTTGACTAACAAAAGTGAGAC-ATAGGGAAATTAAATGATTTTC  327

seq1  ATTGCAGAAAGAACAATGTTATTTAAAGGTACAGTGCTCACTAAGAGACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGAAAGAACAATGTTATTTAAAGGTACAGTGCTCACTAAGAGACA  377

seq1  AAAAGGGATAAAGAAATCAGCAACACTGTGGTTAAAACACTGGACTCCAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGATAAAGAAATCAGCAACACTGTGGTTAAAACACTGGACTCCAG  427

seq1  GTTGTATTCTGAGTTGGGAAGCCCCAAAGCCCATGTGGAAGATACCAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTATTCTGAGTTGGGAAGCCCCAAAGCCCATGTGGAAGATACCAGGA  477

seq1  GAGAGTAGCCATGCCGCTTAGTATTCAAGCTTTGAAATACAGAATCAGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTAGCCATGCCGCTTAGTATTCAAGCTTTGAAATACAGAATCAGTG  527

seq1  GATCCTAGGGGCAAGCTGGAGCTCTGAGAGACTGCCTCAGAGAATGAGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTAGGGGCAAGCTGGAGCTCTGAGAGACTGCCTCAGAGAATGAGGT  577

seq1  AGAAGAGGGAATGAGGGTCATTCCCATATCAACCTCCTGCCTTGCTGTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGGAATGAGGGTCATTCCCATATCAACCTCCTGCCTTGCTGTTT  627

seq1  ATATGACAATATGCACACGTATACACACCATGCATAGCTATACCAGATAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAATATGCACACGTATACACACCATGCATAGCTATACCAGATAC  677

seq1  TCACTATGCTCACTATTTGTATTCATGTCAATGGCAAAAAAGAGAGATGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTATGCTCACTATTTGTATTCATGTCAATGGCAAAAAAGAGAGATGA  727

seq1  TAAAGAGCTTTTTGTTGTTGTTGTTCTTTTTCAAAAGAACCTCTACCTAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGCTTTTTGTTGTTGTTGTTCTTTTTCAAAAGAACCTCTACCTAA  777

seq1  ATGGTGGTGGTGGGGTGCAGCCACAAAGGCATCTCCTATAGGAGGACCTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGTGGTGGGGTGCAGCCACAAAGGCATCTCCTATAGGAGGACCTA  827

seq1  ACAGAAGACTGCCTGAGGGACTGCTGACACAGACAATGTCCACCAATAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGACTGCCTGAGGGACTGCTGACACAGACAATGTCCACCAATAGG  877

seq1  GAGCTGCTGTTTTGAAAAGATGCTTTCTTGGGACCAATGGGACGTGGGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCTGTTTTGAAAAGATGCTTTCTTGGGACCAATGGGACGTGGGTG  927

seq1  GAGGGTAGTAAAGGAGCTTGCAGCAGTGCTCAGTTCCCGTGGCTTTCCTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGTAAAGGAGCTTGCAGCAGTGCTCAGTTCCCGTGGCTTTCCTC  977

seq1  ACCTGCTCCTGGAGTCTGGGTCATTGATTCTGTGCAACCTCATCTCCAGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTCCTGGAGTCTGGGTCATTGATTCTGTGCAACCTCATCTCCAGC  1027

seq1  CCTCAAGGGCACAGGCAGCAACATTTGTGTCAGTAGAGTTTGGAAACTAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGGCACAGGCAGCAACATTTGTGTCAGTAGAGTTTGGAAACTAT  1077

seq1  TACCAAATATACTGTAGTAATACTTCCACAACTTCCACAGTCACAATAAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAATATACTGTAGTAATACTTCCACAACTTCCACAGTCACAATAAC  1127

seq1  TGACAACCAGTATAAACTTACTAGAAAGAGCATGGCTATCCAGAATTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACCAGTATAAACTTACTAGAAAGAGCATGGCTATCCAGAATTC  1175

seq1: chr3_119725382_119725981
seq2: B6Ng01-123C07.g_68_667

seq1  GAATTCAATGCCTCCAGGCATAAACCTGTAGATCCCGTGCTCTCTGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCTCCAGGCATAAACCTGTAGATCCCGTGCTCTCTGGACA  50

seq1  CAGGGAAGCTGTCGGTAAGCATGGATATGTGCAAAATGCCAACACTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGCTGTCGGTAAGCATGGATATGTGCAAAATGCCAACACTGGTG  100

seq1  AGTACAAGTAGACTGATCTTGAATTTTAGGTCAACCTTTGTAAGACTGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAGTAGACTGATCTTGAATTTTAGGTCAACCTTTGTAAGACTGCG  150

seq1  TTAATCAGATTCCCTTCTTCATGACACAGTACTCAAGGAAGATCATTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGATTCCCTTCTTCATGACACAGTACTCAAGGAAGATCATTTTG  200

seq1  AAGGATAAAAGTTTGTTTTGACCCACAGCTTCAGCAGTTTCACTGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAAAGTTTGTTTTGACCCACAGCTTCAGCAGTTTCACTGTTTTT  250

seq1  GGCTAATGATGTGACAGAAAAATGTGTCAGTGGAAGACAGAGATTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATGATGTGACAGAAAAATGTGTCAGTGGAAGACAGAGATTGTGTT  300

seq1  CAAAGGCAGAAAACAATGATTCACTTCTTCTAAATATCTATCCGTGCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCAGAAAACAATGATTCACTTCTTCTAAATATCTATCCGTGCTGT  350

seq1  ACTAGTTACCTTTTAGTGCTCGGATAAAACATCAAAACCAATACAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTACCTTTTAGTGCTCGGATAAAACATCAAAACCAATACAGTTCA  400

seq1  TGGAAGAAATTTATCTTGTGCTCATAGTTGTAGATGGCTACAGTCCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAAATTTATCTTGTGCTCATAGTTGTAGATGGCTACAGTCCATAA  450

seq1  TGTTAGGCATCATAGACATAACATGCATAAAGACATGCCATCAAAGATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGCATCATAGACATAACATGCATAAAGACATGCCATCAAAGATAG  500

seq1  GCATGGTGGATAAAGCAGGGAGCTGAGAGATCACATCTTAACCATAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTGGATAAAGCAGGGAGCTGAGAGATCACATCTTAACCATAGACA  550

seq1  AGAGGCAGAGGAAGAGAAGGAGGGAGGGAAGGAGGAAAGGGGAGAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAGGAAGAGAAGGAGGGAGGGAAGGAGGAAAGGGGAGAAAAAG  600