BAC Information

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BAC

Clone NameB6Ng01-123D07
Chromosome3 (Build37)
Map Location 124,903,484 - 125,065,753
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817, LOC668820
Downstream geneNdst4, Ugt8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123D07.bB6Ng01-123D07.g
ACCDH926434DH926435
length1,092815
definitionDH926434|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D07, 5' end.DH926435|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,903,484 - 124,904,589)(125,064,939 - 125,065,753)
sequence
gaattccttcattttctgctaagtaaaaaacaaaatacttttttaaacat
aaactaccccaaatatataaaacaaatatttttcacagcctaagttttaa
ggctacaactgttaatgactacaaatgatttcttcctaggaatatagttt
ttgtagaagacctcagagtctctcccttgtgtgaagtggggattccagag
acatgatgggaaacacaaacttgaggtgacattttctgatctttgcatgg
tcttttctatcttgaatttcccttttcattgctcaaattcctataacaag
ctgtttagtttttattcaaatgaagaataccaagaagatgtgtagaatgg
tagaggaggctggagactttatacagaagttcacctctcacttttttttc
tcatagattttgtacagacttatttctgaattgtatttttacaatgacac
ttcctgctaatagttttatccctaagaaggtgatctcaaaaacatatttt
ccatctatttaaagacattttcattgctgattttccatctaagtcagcat
acaccatttattcatagcattagtccttgggaatgagcctaaaacccact
ctgctaacctcatgttggtgtgctttcattccacattaaccaccatgtct
acttattgcacaaaggcatgatctgccattgttgttgctttttcaataac
aatgtcacagtgagaatgaactctcttctcctctttgctgtcagctgttc
cttgctggtggtgtccattggttcttcaattcttaatcagtaaagtgctc
ttttggcataatgcctactagtgaggctcctcaaattctctttaggtttt
gtttttcatcttttctcaacacatcctctcaagaagggtgagtaaaaagg
gatctgagattctttttagagctaccctagtttgagttaaagtgtccatt
ttgtcgacttgccatcaaatgttcatctgtgaaagcctgaagagtttgtt
tttttttctttacttttaaaaattttttcagttgctctatcttgctgaat
tgcctcctaagttatacagctgattttttttttagagtgagt
gaattctgggaagtactagacgttaggcagaagagagggcacagacaggg
tttcttgctattaatttgatctgccattttatttatgagaaagttagatt
acgtccattgtttttttctaaatacattcttgctactattgttaattaaa
gtatatgtgtttcattttatgttcacatgtttacatatgaagtacctatg
gattcagaagtagaaattcagtgtcatggaagtgtagctaaagcatgctg
taagacatacaatgtgagaatttgaaaccgaaatctgttcacttagaaga
ggagcaagtgtcctcaaccactgagctgtatctccaaaccctgattatat
cttaaataacatacagtaattgaagtaattacaggacgcagaatgcagaa
aaaaatatatatataaatctagaatgtctctgtgttgggaatacattttt
ttcttgttattttatcaaatatatcataaattgttttaaactataattac
tctaccatgttgttacagaataaagcaaatattgtcctctcgtataaaat
ctgcattaattttgttactaattatcattttggtagtttattttaatttt
atttatgtgtctgtgtctatgtgttattatgccaaatgtgtgtatgtact
catgaggaccagaagaaactatacaatctcctaaagtactagctacaaat
atctgtgagtctcctgatatgggtatgggaattaaacagtatacttaaga
tgtattcaatgatatttcaaaccatgtaattagaacttgaccaattggtt
tatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_124903484_124904589
seq2: B6Ng01-123D07.b_44_1135

seq1  GAATTCCTTCATTTTCTGCTAAGTAAAAAACAAAATACTTTTTTAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCATTTTCTGCTAAGTAAAAAACAAAATACTTTTTTAAACAT  50

seq1  AAACTACCCCAAATATATAAAACAAATATTTTTCACAGCCTAAGTTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCCCAAATATATAAAACAAATATTTTTCACAGCCTAAGTTTTAA  100

seq1  GGCTACAACTGTTAATGACTACAAATGATTTCTTCCTAGGAATATAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAACTGTTAATGACTACAAATGATTTCTTCCTAGGAATATAGTTT  150

seq1  TTGTAGAAGACCTCAGAGTCTCTCCCTTGTGTGAAGTGGGGATTCCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGAAGACCTCAGAGTCTCTCCCTTGTGTGAAGTGGGGATTCCAGAG  200

seq1  ACATGATGGGAAACACAAACTTGAGGTGACATTTTCTGATCTTTGCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGGGAAACACAAACTTGAGGTGACATTTTCTGATCTTTGCATGG  250

seq1  TCTTTTCTATCTTGAATTTCCCTTTTCATTGCTCAAATTCCTATAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTATCTTGAATTTCCCTTTTCATTGCTCAAATTCCTATAACAAG  300

seq1  CTGTTTAGTTTTTATTCAAATGAAGAATACCAAGAAGATGTGTAGAATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGTTTTTATTCAAATGAAGAATACCAAGAAGATGTGTAGAATGG  350

seq1  TAGAGGAGGCTGGAGACTTTATACAGAAGTTCACCTCTCACTTTTTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGAGGCTGGAGACTTTATACAGAAGTTCACCTCTCACTTTTTTTTC  400

seq1  TCATAGATTTTGTACAGACTTATTTCTGAATTGTATTTTTACAATGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGATTTTGTACAGACTTATTTCTGAATTGTATTTTTACAATGACAC  450

seq1  TTCCTGCTAATAGTTTTATCCCTAAGAAGGTGATCTCAAAAACATATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCTAATAGTTTTATCCCTAAGAAGGTGATCTCAAAAACATATTTT  500

seq1  CCATCTATTTAAAGACATTTTCATTGCTGATTTTCCATCTAAGTCAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTATTTAAAGACATTTTCATTGCTGATTTTCCATCTAAGTCAGCAT  550

seq1  ACACCATTTATTCATAGCATTAGTCCTTGGGAATGAGCCTAAAACCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATTTATTCATAGCATTAGTCCTTGGGAATGAGCCTAAAACCCACT  600

seq1  CTGCTAACCTCATGTTGGTGTGCTTTCATTCCACATTAACCACCATGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAACCTCATGTTGGTGTGCTTTCATTCCACATTAACCACCATGTCT  650

seq1  ACTTATTGCACAAAGGCATGATCTGCCATTGTTGTTGCTTTTTCAATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGCACAAAGGCATGATCTGCCATTGTTGTTGCTTTTTCAATAAC  700

seq1  AATGTCACAGTGAGAATGAACTCTCTTCTCCTCTTTGCTGTCAGCTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCACAGTGAGAATGAACTCTCTTCTCCTCTTTGCTGTCAGCTGTTC  750

seq1  CTTGCTGGTGGTGTCCATTGGTTCTTCAATTCTTAATCAGTAAAGTGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGGTGGTGTCCATTGGTTCTTCAATTCTTAATCAGTAAAGTGCTC  800

seq1  TTTTGGCATAATGCCTACTAGTGAGGCTCCTCAAATTCTCTTTAGGTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCATAATGCCTACTAGTGAGGCTCCTCAAATTCTCTTTAGGTTTT  850

seq1  GTTTTTCATCTTTTCTCAACACATCCTCTCAAGAAGGGTGAGTAAAAAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCATCTTTTCTCAACACATCCTCTCAAGAAGGGTGAGTAAAAAGG  900

seq1  GATCTGAGATTCTTTTTAGAGCTACCCTAGGTTTGAGTTAAAGTGTCCAT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GATCTGAGATTCTTTTTAGAGCTACCCTA-GTTTGAGTTAAAGTGTCCAT  949

seq1  TTTGTCGACTTGCCATCAAAATGTTCATCTGTGAAAGCCTGAAAGAGTTT  1000
      ||||||||||||||||| ||||||||||||||||||||||| ||||||||
seq2  TTTGTCGACTTGCCATC-AAATGTTCATCTGTGAAAGCCTG-AAGAGTTT  997

seq1  GTTTTTTTTTTTCTTTTACTTTTTAAAAACATTTTTTCAGTTTGCTCTAT  1050
      ||||||||||    |||||||||   ||| |||||||||| |||||||||
seq2  GTTTTTTTTT---CTTTACTTTT---AAAAATTTTTTCAG-TTGCTCTAT  1040

seq1  CTTGCTGAGTTGCCTCCTAAAGTTATACAGCTTGATTTTTTTTTTATAGA  1100
      |||||||| ||||||||| |||||||||||| ||||||||||||  ||||
seq2  CTTGCTGAATTGCCTCCT-AAGTTATACAGC-TGATTTTTTTTT--TAGA  1086

seq1  GTGAGT  1106
      ||||||
seq2  GTGAGT  1092

seq1: chr3_125064939_125065753
seq2: B6Ng01-123D07.g_68_882 (reverse)

seq1  ATATATATATATATATACCAATTGGTCAAGTTCTAATTACATGGTTTGAA  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATAAACCAATTGGTCAAGTTCTAATTACATGGTTTGAA  50

seq1  ATATCATTGAATACATCTTAAGTATACTGTTTAATTCCCATACCCATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTGAATACATCTTAAGTATACTGTTTAATTCCCATACCCATATC  100

seq1  AGGAGACTCACAGATATTTGTAGCTAGTACTTTAGGAGATTGTATAGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTCACAGATATTTGTAGCTAGTACTTTAGGAGATTGTATAGTTT  150

seq1  CTTCTGGTCCTCATGAGTACATACACACATTTGGCATAATAACACATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTCCTCATGAGTACATACACACATTTGGCATAATAACACATAGA  200

seq1  CACAGACACATAAATAAAATTAAAATAAACTACCAAAATGATAATTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACACATAAATAAAATTAAAATAAACTACCAAAATGATAATTAGTA  250

seq1  ACAAAATTAATGCAGATTTTATACGAGAGGACAATATTTGCTTTATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTAATGCAGATTTTATACGAGAGGACAATATTTGCTTTATTCTG  300

seq1  TAACAACATGGTAGAGTAATTATAGTTTAAAACAATTTATGATATATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACATGGTAGAGTAATTATAGTTTAAAACAATTTATGATATATTTG  350

seq1  ATAAAATAACAAGAAAAAAATGTATTCCCAACACAGAGACATTCTAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAACAAGAAAAAAATGTATTCCCAACACAGAGACATTCTAGATT  400

seq1  TATATATATATTTTTTTCTGCATTCTGCGTCCTGTAATTACTTCAATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATTTTTTTCTGCATTCTGCGTCCTGTAATTACTTCAATTAC  450

seq1  TGTATGTTATTTAAGATATAATCAGGGTTTGGAGATACAGCTCAGTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTATTTAAGATATAATCAGGGTTTGGAGATACAGCTCAGTGGTT  500

seq1  GAGGACACTTGCTCCTCTTCTAAGTGAACAGATTTCGGTTTCAAATTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACACTTGCTCCTCTTCTAAGTGAACAGATTTCGGTTTCAAATTCTC  550

seq1  ACATTGTATGTCTTACAGCATGCTTTAGCTACACTTCCATGACACTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTATGTCTTACAGCATGCTTTAGCTACACTTCCATGACACTGAAT  600

seq1  TTCTACTTCTGAATCCATAGGTACTTCATATGTAAACATGTGAACATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTCTGAATCCATAGGTACTTCATATGTAAACATGTGAACATAAA  650

seq1  ATGAAACACATATACTTTAATTAACAATAGTAGCAAGAATGTATTTAGAA  700
      ||||||||||||||||||||||||||||||||||||              
seq2  ATGAAACACATATACTTTAATTAACAATAGTAGCAANNNNNNNNNNNNNN  700

seq1  AAAAACAATGGACGTAATCTAACTTTCTCATAAATAAAATGGCAGATCAA  750
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  NNNAACAATGGACGTAATCTAACTTTCTCATAAATAAAATGGCAGATCAA  750

seq1  ATTAATAGCAAGAAACCCTGTCTGTGCCCTCTCTTCTGCCTAACGTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGCAAGAAACCCTGTCTGTGCCCTCTCTTCTGCCTAACGTCTAG  800

seq1  TACTTCCCAGAATTC  815
      |||||||||||||||
seq2  TACTTCCCAGAATTC  815