BAC Information

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BAC

Clone NameB6Ng01-123E10
Chromosome3 (Build37)
Map Location 127,737,184 - 127,873,920
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1, T2bp, BC002199, 5730508B09Rik, LOC100043382
Downstream geneEG668828, LOC100043393, EG668831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123E10.bB6Ng01-123E10.g
ACCDH926486DH926487
length1,1381,143
definitionDH926486|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E10, 5' end.DH926487|Mus musculus domesticus DNA, BAC clone: B6Ng01-123E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,737,184 - 127,738,323)(127,872,745 - 127,873,920)
sequence
gaattctctttctgtgttagaatcttcctttcgctgtagcatctcattca
tccttctttcagggaattgataccatcttgtctttctgaggcatttatga
cagtttaaaatgttcatggattatttttaatgagctatagctgcacatag
taatccagtcaaacaataaatagtattccctggtcaggaatctctccttc
ctcgacacctgtcctcttccttctcttattagtttcttccttaaggctag
acagtgtaatttaaagagtttggctttatctccccagttatgacaacaag
aatttttgtgtctgatttggtgattttttaaaaaattttattccaattct
tgctaatggtatcatttaattctcttaggctgagtagcacctttctgtgt
gcatataaaccccatgaaaacagtgatgttatttctttaattttatcaat
aactcctatcatgtatgattttaaacaaaccatttatttaaataaataat
agcttaatacaaagtgttcagcttagatgtgaagaggctggggtttctag
ccgtagaggtcaccacctccctgcccttcactctgctgacccatccacct
ttgctccttaagcacgctgtctcaaaagcctctgctatttgattgacaga
gggagagtcatcgttccagtgttctttgtaggtggaggagtggtaatcta
tgactagaatgggggtgggaatatggggtctctgggcttcttacgttgat
tttaatagatttgtctgctttttgggattcaccatccattgtttctccca
ttttcaagtctttctgaagatgaagggatcaaggtcatgaaattgaggaa
aagcagatctatctatctatctatctatctatctatctatctatctacta
tctatctatttacctatatacatacacacacaatacacgtcaagaagaga
tcaagtcatgacatgtatatataggatgtacatcatattgagtctattta
gtgtttcatatgtgtgtttagagcttgtccacttgtattggataatccat
aagtcttgtcataggaaaagactaaatcccactcccttaaagtgcattac
ttggtcttagctctttacctaaggttggaaccttgtga
gaattctggtttctgctcccccatcccctattcctgctcagggccattat
aaatgatgtattaaagcagaaagagggcaacagaatcatctgagggagta
gggagcaaaactctgattctcgcccctgatagtcgagctaaattcatggt
atatcagaggtatatcttatattctaagtatttaattgtgccttttcttc
atatacatacacactgaaaatttgactacaggctaaggtagaaaaaataa
aaccttggaccggatttggttttcaactgagtctaatacttaaggaaggt
ttctgaccaggaagtatgatacttgataaatagtgtttccctatcaacaa
tgaaatattcaaattaaatatttgactatttcccaatagccaatttactt
ttgctgttattatgaagccactggcaactattaaaattttttctacctac
cagctgataattatctttctaaactaagttcaaatgatgtggtgaacagt
ctgttaagatagctctaagatttctgaattatacttgggatcaaagacat
gattcattggggggaaaatgagattgataggtctgaagcaaagaaaccct
aaactaataaacctagaaataaaaagtgaaatgttactacaaattttagt
gaattctgaagaaacattgaaatcttcacaacttatatttttacaaaagg
agacacattggatctcctaaaattaaaccaacagcatgtaaacaacttta
atagattcacagtagccaagatggaagccataataaaaagccactaacaa
aggaaaccccaggattggatgtatttgttacatgattctctcattcagaa
agggaagaaaagtactagacttattctataaggcattatcatcccaaaat
cagataagagcacaggaaaggaagaaaactgtagaccaatttctctacat
ggattaaaaaattatgatacattccagcaaagcaaactagaacacattta
gatgatctcaacatgacaaatgtttcatcacggtgcactacacaatcata
gtatgattgacacaaaggcaaggactgaaatcctgtatctttccctccaa
atgtcacatccttcagaggaaaatcctggaagactgaaaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_127737184_127738323
seq2: B6Ng01-123E10.b_49_1186

seq1  GAATTCTCTTTCTGTGTTAGAATCTTCCTTTCGCTGTAGCATCTCATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTGTGTTAGAATCTTCCTTTCGCTGTAGCATCTCATTCA  50

seq1  TCCTTCTTTCAGGGAATTGATACCATCTTGTCTTTCTGAGGCATTTATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTCAGGGAATTGATACCATCTTGTCTTTCTGAGGCATTTATGA  100

seq1  CAGTTTAAAATGTTCATGGATTATTTTTAATGAGCTATAGCTGCACATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAAAATGTTCATGGATTATTTTTAATGAGCTATAGCTGCACATAG  150

seq1  TAATCCAGTCAAACAATAAATAGTATTCCCTGGTCAGGAATCTCTCCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCAGTCAAACAATAAATAGTATTCCCTGGTCAGGAATCTCTCCTTC  200

seq1  CTCGACACCTGTCCTCTTCCTTCTCTTATTAGTTTCTTCCTTAAGGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGACACCTGTCCTCTTCCTTCTCTTATTAGTTTCTTCCTTAAGGCTAG  250

seq1  ACAGTGTAATTTAAAGAGTTTGGCTTTATCTCCCCAGTTATGACAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTAATTTAAAGAGTTTGGCTTTATCTCCCCAGTTATGACAACAAG  300

seq1  AATTTTTGTGTCTGATTTGGTGATTTTTTAAAAAATTTTATTCCAATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGTGTCTGATTTGGTGATTTTTTAAAAAATTTTATTCCAATTCT  350

seq1  TGCTAATGGTATCATTTAATTCTCTTAGGCTGAGTAGCACCTTTCTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGGTATCATTTAATTCTCTTAGGCTGAGTAGCACCTTTCTGTGT  400

seq1  GCATATAAACCCCATGAAAACAGTGATGTTATTTCTTTAATTTTATCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAAACCCCATGAAAACAGTGATGTTATTTCTTTAATTTTATCAAT  450

seq1  AACTCCTATCATGTATGATTTTAAACAAACCATTTATTTAAATAAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTATCATGTATGATTTTAAACAAACCATTTATTTAAATAAATAAT  500

seq1  AGCTTAATACAAAGTGTTCAGCTTAGATGTGAAGAGGCTGGGGTTTCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAATACAAAGTGTTCAGCTTAGATGTGAAGAGGCTGGGGTTTCTAG  550

seq1  CCGTAGAGGTCACCACCTCCCTGCCCTTCACTCTGCTGACCCATCCACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAGAGGTCACCACCTCCCTGCCCTTCACTCTGCTGACCCATCCACCT  600

seq1  TTGCTCCTTAAGCACGCTGTCTCAAAAGCCTCTGCTATTTGATTGACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCCTTAAGCACGCTGTCTCAAAAGCCTCTGCTATTTGATTGACAGA  650

seq1  GGGAGAGTCATCGTTCCAGTGTTCTTTGTAGGTGGAGGAGTGGTAATCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGTCATCGTTCCAGTGTTCTTTGTAGGTGGAGGAGTGGTAATCTA  700

seq1  TGACTAGAATGGGGGTGGGAATATGGGGTCTCTGGGCTTCTTACGTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGAATGGGGGTGGGAATATGGGGTCTCTGGGCTTCTTACGTTGAT  750

seq1  TTTAATAGATTTGTCTGCTTTTT-GGATTCACCATCCATTGTTTCTCCCA  799
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTAATAGATTTGTCTGCTTTTTGGGATTCACCATCCATTGTTTCTCCCA  800

seq1  -TTTCAAGTCTTTCTGAAGATGAAGGGATCAAGGTCATGAAATTGAGGAA  848
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAGTCTTTCTGAAGATGAAGGGATCAAGGTCATGAAATTGAGGAA  850

seq1  AAGCAGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACTA  900

seq1  TCTATCTATTTACCTTATATACATACACACACAAATACACGTCAAGAAGA  948
      |||||||||||||| ||||||||||||||||| |||||||||||||||||
seq2  TCTATCTATTTACC-TATATACATACACACAC-AATACACGTCAAGAAGA  948

seq1  GATCAAGGTCATGAACATGTATATATAGGATGTACATCATATTGAGTCTA  998
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  GATCAA-GTCATG-ACATGTATATATAGGATGTACATCATATTGAGTCTA  996

seq1  TTTAGTGTTTCATATGTGTGTTTAGAGC-TGTCCACTTGGTATTGGATAA  1047
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  TTTAGTGTTTCATATGTGTGTTTAGAGCTTGTCCACTT-GTATTGGATAA  1045

seq1  TCCATCAGGGCCTTGTCCATGGAGAAGACTAAATCTCATCCCCT--AAGT  1095
      ||||| |  | ||||||   ||| ||||||||||| ||  ||||  ||||
seq2  TCCATAA--GTCTTGTCATAGGAAAAGACTAAATCCCACTCCCTTAAAGT  1093

seq1  GCCATTACTT-GTCTTAGCTCTTTACCTAGGGGTGGGACCTTGTGA  1140
      | |||||||| |||||||||||||||||| || ||| |||||||||
seq2  G-CATTACTTGGTCTTAGCTCTTTACCTAAGGTTGGAACCTTGTGA  1138

seq1: chr3_127872745_127873920
seq2: B6Ng01-123E10.g_67_1209 (reverse)

seq1  TTCCTTCTAAGTCTCTCCAGGGATTTTTCTCTTGAAGGATAGTGACATTA  50
      |||||| | ||||| |||| ||||||| ||| |||||||| |||||||| 
seq2  TTCCTT-TCAGTCT-TCCA-GGATTTTCCTC-TGAAGGAT-GTGACATT-  44

seq1  TAGATGAGAAGATAACAGGATTTCAGTCCTTATGCCTATTTGTGTTCAAA  100
      | || |  ||||| ||||||||||||||||  ||||  |||||||   ||
seq2  TGGAGGGAAAGAT-ACAGGATTTCAGTCCT--TGCC--TTTGTGT--CAA  87

seq1  TCATACTTATTGATTTGTGTAAGTTGCACCCGTGGAATGAAAACCATTTT  150
      |||||||   ||| |||||||   |||| |||||  ||||||  ||||| 
seq2  TCATACT--ATGA-TTGTGTA--GTGCA-CCGTG--ATGAAA--CATTT-  126

seq1  GGTCATGTTGTATGATCATCTAAATGTGTTCTAGTTTTGCTTTGCTGGAA  200
       |||||||||   ||||||||||||||||||||| |||||||||||||||
seq2  -GTCATGTTG--AGATCATCTAAATGTGTTCTAG-TTTGCTTTGCTGGAA  172

seq1  TGTTATTCATATTTTTTTAATCCATTGTTAGAGAAATTGGTCTACAGTTT  250
      |||   ||||| |||||||||||||   ||||||||||||||||||||||
seq2  TGT--ATCATAATTTTTTAATCCAT--GTAGAGAAATTGGTCTACAGTTT  218

seq1  TCTTCCTTTCCTGTGCTCTTATCTGATTTTGGGATGATAATGGCTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||| || |||||
seq2  TCTTCCTTTCCTGTGCTCTTATCTGATTTTGGGATGATAAT-GCCTTATA  267

seq1  GAATAAGTCTAGTACTTTTCTTCCCTTTCTGGATGAGAGAATCATGTAAC  350
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAATAAGTCTAGTACTTTTCTTCCCTTTCTGAATGAGAGAATCATGTAAC  317

seq1  AAATACATCCAATCCTGGGGTTTCCTTTGTTAGTGGCTTTTTATTATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACATCCAATCCTGGGGTTTCCTTTGTTAGTGGCTTTTTATTATGGC  367

seq1  TTCCATCTTGGCTACTGTGAATCTATTAAAGTTGTTTACATGCTGTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTTGGCTACTGTGAATCTATTAAAGTTGTTTACATGCTGTTGGT  417

seq1  TTAATTTTAGGAGATCCAATGTGTCTCCTTTTGTAAAAATATAAGTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAGGAGATCCAATGTGTCTCCTTTTGTAAAAATATAAGTTGTG  467

seq1  AAGATTTCAATGTTTCTTCAGAATTCACTAAAATTTGTAGTAACATTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCAATGTTTCTTCAGAATTCACTAAAATTTGTAGTAACATTTCA  517

seq1  CTTTTTATTTCTAGGTTTATTAGTTTAGGGTTTCTTTGCTTCAGACCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTATTTCTAGGTTTATTAGTTTAGGGTTTCTTTGCTTCAGACCTAT  567

seq1  CAATCTCATTTTCCCCCCAATGAATCATGTCTTTGATCCCAAGTATAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCATTTTCCCCCCAATGAATCATGTCTTTGATCCCAAGTATAATT  617

seq1  CAGAAATCTTAGAGCTATCTTAACAGACTGTTCACCACATCATTTGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTTAGAGCTATCTTAACAGACTGTTCACCACATCATTTGAACT  667

seq1  TAGTTTAGAAAGATAATTATCAGCTGGTAGGTAGAAAAAATTTTAATAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAGAAAGATAATTATCAGCTGGTAGGTAGAAAAAATTTTAATAGT  717

seq1  TGCCAGTGGCTTCATAATAACAGCAAAAGTAAATTGGCTATTGGGAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGGCTTCATAATAACAGCAAAAGTAAATTGGCTATTGGGAAATA  767

seq1  GTCAAATATTTAATTTGAATATTTCATTGTTGATAGGGAAACACTATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATATTTAATTTGAATATTTCATTGTTGATAGGGAAACACTATTTA  817

seq1  TCAAGTATCATACTTCCTGGTCAGAAACCTTCCTTAAGTATTAGACTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATCATACTTCCTGGTCAGAAACCTTCCTTAAGTATTAGACTCAG  867

seq1  TTGAAAACCAAATCCGGTCCAAGGTTTTATTTTTTCTACCTTAGCCTGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACCAAATCCGGTCCAAGGTTTTATTTTTTCTACCTTAGCCTGTA  917

seq1  GTCAAATTTTCAGTGTGTATGTATATGAAGAAAAGGCACAATTAAATACT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAATTTTCAGTGTGTATGTATATGAAGAAAAGGCACAATTAAATACT  967

seq1  TAGAATATAAGATATACCTCTGATATACCATGAATTTAGCTCGACTATCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATATAAGATATACCTCTGATATACCATGAATTTAGCTCGACTATCA  1017

seq1  GGGGCGAGAATCAGAGTTTTGCTCCCTACTCCCTCAGATGATTCTGTTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGAGAATCAGAGTTTTGCTCCCTACTCCCTCAGATGATTCTGTTGC  1067

seq1  CCTCTTTCTGCTTTAATACATCATTTATAATGGCCCTGAGCAGGAATAGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTCTGCTTTAATACATCATTTATAATGGCCCTGAGCAGGAATAGG  1117

seq1  GGATGGGGGAGCAGAAACCAGAATTC  1176
      ||||||||||||||||||||||||||
seq2  GGATGGGGGAGCAGAAACCAGAATTC  1143